|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00066916 ID=TCONS_00066916|Name=TCONS_00066916|organism=Clytia hemisphaerica|type=transcript|length=6982bpRun BLAST on NCBI transcript from alignment at scaffold_462:847808..874531+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00066916 ID=TCONS_00066916|Name=TCONS_00066916|organism=Clytia hemisphaerica|type=transcript|length=26724bp|location=Sequence derived from alignment at scaffold_462:847808..874531+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00066916 vs. Swiss-Prot (Human)
Match: ROBO2 (Roundabout homolog 2 OS=Homo sapiens GN=ROBO2 PE=1 SV=2) HSP 1 Score: 185.652 bits (470), Expect = 9.485e-47 Identity = 150/497 (30.18%), Postives = 228/497 (45.88%), Query Frame = 3
Query: 54 FKPVFPEKKTTVVTDLFKPLTLRCHARAEPIPLYEWSRNNT-IPSGQTKIQNGVVVKSNHVTLTLRNI----SWSDRGSYFCNAWNSKGYEFKEYEVIVNAIQK--FITRPTDQKVIYGESVKFDCVS-RGIPTPHVSWFTYDESIAVERNVLDINPRQFSVS-KNGSLVITNVRYVDEKTYRCVSTSPRLVRNV-TAKLDVYVEQAFLLKPIDQTVLYGSPVIFNCVSEGRPTPTISWQISLRGSEKVTIVSKDNVDTDE-KYEILNNGSLRINAAFVKDEGIYTCLSTNPGLTRNASASLVVYVTQQFTHKPQSQTVIEGDPIAIMTCISTGVPTPKTYWKFTSSSTGAERVL--DSTSGGDSRLTVEENNDLVIRGVQNSDEGKYTCFSES------PRLLVNVSATLTVHVPPIVSISAKNITVFSSQSAHVTCSAFGDPSPVIRWYQIKNG-ERSELSERATV-EDGTLSLKKVIKEDRGEYACVATNAAGE 1481
F P E + V+ +P TL C A P P EW ++ + + + ++ ++ + LR + S D GSY C A N G + A+ + F PTD V GE +C RG P P + W +++ + I+ ++ +S + G L+I+N R D Y CV T+ R+ A+L V+ FL +PI+Q VL V F C +G P PT+ W+ KD+ D +Y+I ++ +LRI DEG Y C++ N ASA+L V QF +P+ Q V +G + C + G P P +W+ G++ +L + +SR +V DL I +Q SD G Y C + + + + V+ LT PPI+ N T+ +A + C A GDP PVI W +K G RAT+ E GTL +K + D G Y CVAT+++GE
Sbjct: 29 FPPRIVEHPSDVIVSKGEPTTLNCKAEGRPTPTIEWYKDGERVETDKDDPRSHRMLLPSGSLFFLRIVHGRRSKPDEGSYVCVARNYLGEAVSRNASLEVALLRDDFRQNPTDVVVAAGEPAILECQPPRGHPEPTIYW---------KKDKVRIDDKEERISIRGGKLMISNTRKSDAGMYTCVGTNMVGERDSDPAELTVFERPTFLRRPINQVVLEEEAVEFRCQVQGDPQPTVRWK-------------KDDADLPRGRYDIKDDYTLRIKKTMSTDEGTYMCIAENRVGKMEASATLTVRAPPQFVVRPRDQIVAQGRTVT-FPCETKGNPQPAVFWQ----KEGSQNLLFPNQPQQPNSRCSVSPTGDLTITNIQRSDAGYYICQALTVAGSILAKAQLEVTDVLTDRPPPIILQGPANQTLAVDGTALLKCKATGDPLPVISW--LKEGFTFPGRDPRATIQEQGTLQIKNLRISDTGTYTCVATSSSGE 496 HSP 2 Score: 129.798 bits (325), Expect = 1.159e-29 Identity = 115/442 (26.02%), Postives = 186/442 (42.08%), Query Frame = 3
Query: 348 KFITRPTDQKVIYGESVKFDCVSRGIPTPHVSWFTYDESIAVERNVLDINPRQFS-VSKNGSLVITNVRY-----VDEKTYRCVSTS---PRLVRNVTAKLDVYVEQAFLLKPIDQTVLYGSPVIFNCVS-EGRPTPTISWQISLRGSEKVTIVSKDNVDTDEKYEILN--NGSLRINAAFVKDEGIYTCLSTNPGLTRNAS-ASLVVYVTQQFTHKPQSQTVIEGDPIAIMTCISTGVPTPKTYWKFTSSSTGAERVLDSTSGGDSRLTVEENNDLVIRGVQNSDEGKYTCFSESPRLLVNVSATLTVHVPPIVSISAKNITVFSSQSAHVTCSAFGDPSPVIRWYQIKNGERSEL--------SERATVED-GTLSLKKVIKEDRGEYACVATNAAGEVDVQLKVKVNVRCLMDEIPNGDLH-PKKYVFGEKGKVRVTCR 1604
+ + P+D V GE +C + G PTP + W+ E + +++ +PR + +GSL + + DE +Y CV+ + + RN + ++ + F P D V G P I C G P PTI W+ KD V D+K E ++ G L I+ D G+YTC+ TN R++ A L V+ F +P +Q V+E + + C G P P WK D R ++++ L I+ ++DEG Y C +E+ + SATLTV PP + ++ V ++ C G+P P + W K G ++ L + R +V G L++ + + D G Y C A AG + + +++V L D P L P G + C+
Sbjct: 32 RIVEHPSDVIVSKGEPTTLNCKAEGRPTPTIEWYKDGERVETDKD----DPRSHRMLLPSGSLFFLRIVHGRRSKPDEGSYVCVARNYLGEAVSRNASLEV-ALLRDDFRQNPTDVVVAAGEPAILECQPPRGHPEPTIYWK-------------KDKVRIDDKEERISIRGGKLMISNTRKSDAGMYTCVGTNMVGERDSDPAELTVFERPTFLRRPINQVVLEEEAVEFR-CQVQGDPQPTVRWK-----------KDDADLPRGRYDIKDDYTLRIKKTMSTDEGTYMCIAENRVGKMEASATLTVRAPPQFVVRPRDQIVAQGRTVTFPCETKGNPQPAVFWQ--KEGSQNLLFPNQPQQPNSRCSVSPTGDLTITNIQRSDAGYYICQALTVAGSILAKAQLEV-TDVLTDRPPPIILQGPANQTLAVDGTALLKCK 440 HSP 3 Score: 112.464 bits (280), Expect = 1.876e-24 Identity = 110/413 (26.63%), Postives = 171/413 (41.40%), Query Frame = 3
Query: 39 LCVSAFKPVFPEKKTTVVTDLFKPLTLRCHA-RAEPIPLYEWSRNNT-IPSGQTKIQNGVVVKSNHVTLTLRNISWSDRGSYFCNAWNSKG-YEFKEYEVIVNAIQKFITRPTDQKVIYGESVKFDCVSRGIPTPHVSWFTYDESIAVERNVLDINPRQFSVSKNGSLVITNVRYVDEKTYRCVSTSPRLVRNVTAKLDVYVEQAFLLKPIDQTVLYGSPVIFNCVSEGRPTPTISWQISLRGSEKVTIVSKDNVDTDEKYEILNNGSLRINAAFVKDEGIYTCLSTNPGLTRNASASLVVYVTQQFTHKPQSQTVIEG--------DPIAIMTCISTGVPTPKTYW---KFTSSSTGAERVLDSTSGGDSRLTVEENNDLVIRGVQNSDEGKYTCFSESPRLLVNVSATLTV 1235
L V+ + F + T VV +P L C R P P W ++ I + +I ++ L + N SD G Y C N G + E+ V F+ RP +Q V+ E+V+F C +G P P V W +++ D+ ++ + + +L I DE TY C++ + +A L V F+++P DQ V G V F C ++G P P + WQ GS+ + ++ + + + G L I D G Y C + + A A L VT T +P +++G D A++ C +TG P P W FT G D R T++E L I+ ++ SD G YTC + S + SA L V
Sbjct: 126 LEVALLRDDFRQNPTDVVVAAGEPAILECQPPRGHPEPTIYWKKDKVRIDDKEERIS----IRGGK--LMISNTRKSDAGMYTCVGTNMVGERDSDPAELTVFERPTFLRRPINQVVLEEEAVEFRCQVQGDPQPTVRW---------KKDDADLPRGRYDIKDDYTLRIKKTMSTDEGTYMCIAENRVGKMEASATLTVRAPPQFVVRPRDQIVAQGRTVTFPCETKGNPQPAVFWQ--KEGSQNLLFPNQPQ-QPNSRCSVSPTGDLTITNIQRSDAGYYICQALTVAGSILAKAQL--EVTDVLTDRPPP-IILQGPANQTLAVDGTALLKCKATGDPLPVISWLKEGFT------------FPGRDPRATIQEQGTLQIKNLRISDTGTYTCVATSSSGETSWSAVLDV 505 The following BLAST results are available for this feature:
BLAST of TCONS_00066916 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2024, MARIMBA.