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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00066899 ID=TCONS_00066899|Name=TCONS_00066899|organism=Clytia hemisphaerica|type=transcript|length=1822bp
ttcacgaaAGATTTCTTCCTGATGGTTgaccaaagaaaatttcatcGTAA
TTTGACGCTATTAGCGACTAATTAAAAAACGAATTACATAATACATGGCG
AAAATTCATGTTTCAAACAAATGGAATATGATAATATAGCTCTGTGGTGA
TGTCACGGAATGGGCGGGACTGTTAGAGGGGGAGGAGCTAGCCTTCGTAA
AGATAAATGTTCATAATGCAATCTTTCAAATTATAAAGCTGTGAACAATA
AATTATCATTGATAAGGTTTGGGCGAAAATGAATGGTCTTAgtgtaaagg
cttggggacaagggaagttttttttgcgttggtgcaatgcaacatgctcc
atcccaccaacctgaaaggCTTTCTCATGTCTCTATGTTgtattgcacca
acgcgaaaaaaacttcccGTGTCTCCAAGCCTTAAGTCCTCTTcacgaaa
aagtttttccatcGTTTTGAAACGATTCCCAAGTTGTTTTATCAATTCAG
ACCTTTTAAAATCATACCTTTGATCCTTTGATTCAGAATAAATATCTTAG
TAATTCCTTCGATCGGGTAATAGAAATCGAAAACAAGGCACGTGCTCCTT
GCATGTCAAAAGGaaacaatatttttgaaatagatcttattggagttttt
gatttttctaaaaaagccatGCATTGGTGAGATTGTTTCgagagtattac
aatagaattccctcgaggaattcctaagagatttctattgtaatactccc
aaaacaatcccacaatggaTCGNatttttctaaaaaagcgatgcattgtg
agaTTGTTTCGAGAGTATttcaatagaattccctcgaggaattcctaaga
gatttctattgtaatactcccaaaacaatcccacaatggatcgctttttt
agaaaagtcaaaaactccgataagatctattgggTCATTGGACTGAAGAT
ATTTTCTTTATTATCGATCCTtagttaattttcttcttcgacACGCTACT
TTGcttcataaaatatttttgcaatttcttttCCATCTTCCTTCCTCAgg
aaatcattatttttttcaaactcaaaATGAGAGGTCATTCCGCAAAAGAA
GGTTAAAAGGTGTTTGACCAACGCAAAACTCTCAATACtaaattataaaa
tataaacGTATCCACAATCTTATCGCCTTAGCTCTCAATAGAGTAAAGAA
AACTATATGCTTTACAGTACACTTATACCACAAAGATTAAGACGTACGTA
TGTTATGTGATGTAATGTAAGTATATGCTTATTATGGAAATCTCAAGGTA
AATGCATCAtctaaatatttacaaaatggaATGTTATAAAATTGCGTTTT
AAATGTTCTGAAAATACAgaaGTGTCGAAGGTTATTCAACATCATCAGAA
GTACAATTGACTTTAATCACAGTACAGTagtaaaatattttacagaatgA
ATGTCACTTCAGAGACAAACACTGGCCATTTATTGGATCTCTGGCCAATA
TCAATCGCTACTGGACCAGTTGTGGCACCATAACTTTCTGCAAAAAGaga
ctactaaaaaccacattaCTTTAACACACCAGGTTAGCCCTGGATCATAG
AGGTATACCTTTATATTTTTACTTTCAAGTCAACAACAAGGGTCTTGTGG
CTGGTCACCCAGGCATTTTGCCAAATCCTGAGGAACAGCTGCACATGACA
GTGAATCTGATATTCCCATGTGCAGCTGACCAGGTAAGGCGGTCattgaa
aaaatgctctgttcgcgtcgcaatgggtgttaaaaatgcatgcgggcgga
cgggcggtcaaaaaaaTTCCTG Run BLAST on NCBI transcript from alignment at scaffold_462:743841..752039+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00066899 ID=TCONS_00066899|Name=TCONS_00066899|organism=Clytia hemisphaerica|type=transcript|length=8199bp|location=Sequence derived from alignment at scaffold_462:743841..752039+ (Clytia hemisphaerica)
ttcacgaaAGATTTCTTCCTGATGGTTgaccaaagaaaatttcatcGTAA
TTTGACGCTATTAGCGACTAATTAAAAAACGAATTACATAATACATGGCG
AAAATTCATGTTTCAAACAAATGGAATATGATAATATAGCTCTGTGGTGA
TGTCACGGAATGGGCGGGACTGTTAGAGGGGGAGGAGCTAGCCTTCGTAA
AGATAAATGTTCATAATGCAATCTTTCAAATTATAAAGCTGTGAACAATA
AATTATCATTGATAAGGTTTGGGCGAAAATGAATGGTCTTAgtgtaaagg
cttggggacaagggaagttttttttgcgttggtgcaatgcaacatgctcc
atcccaccaacctgaaaggCTTTCTCATGTCTCTATGTTgtattgcacca
acgcgaaaaaaacttcccGTGTCTCCAAGCCTTAAGTCCTCTTcacgaaa
aagtttttccatcGTTTTGAAACGATTCCCAAGTTGTTTTATCAATTCAG
ACCTTTTAAAATCATACCTTTGATCCTTTGATTCAGAATAAATATCTTAG
TAATTCCTTCGATCGGGTAATAGAAATCGAAAACAAGGCACGTGCTCCTT
GCATGTCAAAAGGaaacaatatttttgaaatagatcttattggagttttt
gatttttctaaaaaagccatGCATTGGTGAGATTGTTTCgagagtattac
aatagaattccctcgaggaattcctaagagatttctattgtaatactccc
aaaacaatcccacaatggaTCGNatttttctaaaaaagcgatgcattgtg
agaTTGTTTCGAGAGTATttcaatagaattccctcgaggaattcctaaga
gatttctattgtaatactcccaaaacaatcccacaatggatcgctttttt
agaaaagtcaaaaactccgataagatctattgggTCATTGGACTGAAGAT
ATTTTCTTTATTATCGATCCTtagttaattttcttcttcgacACGCTACT
TTGcttcataaaatatttttgcaatttcttttCCATCTTCCTTCCTCAgg
aaatcattatttttttcaaactcaaaATGAGAGGTCATTCCGCAAAAGAA
GGTTAAAAGGTGTTTGACCAACGCAAAACTCTCAATACtaaattataaaa
tataaacGTATCCACAATCTTATCGCCTTAGCTCTCAATAGAGTAAAGAA
AACTATATGCTTTACAGTACACTTATACCACAAAGATTAAGACGTACGTA
TGTTATGTGATGTAATGTAAGTATATGCTTATTATGGAAATCTCAAGGTA
AATGCATCAtctaaatatttacaaaatggaATGTTATAAAATTGCGTTTT
AAATGTTCTGAAAATACAggtaaaagaattacaaaatagttgaacgtgcg
caccgcactgggctcaacttcagattttcccgttattagaaggcccaatt
gtaacatttcaaatatttagtattaggtagcaaatataCTTTGTCCGTNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNAATGATCAATAATTTCGTTTCTTTTCAGTTCAGATTATACT
TTATAACCAAATATGAAGTTCTAGCCATTAGGATTATAATAAAGAATctt
aaaatcccaatgggaaatTATATTGCTGAAAACTCAAAATCCAATAGTGG
TTCCAAAACTGTTTTGTACTGTTTTCTCATAGGAGATGAGATCTTCAAAA
TGGGATGAGACTTTAGGTTTCTCCAATAAAGAAAATCTTAAGAGAGCCTT
TCCACTGGGGGTGAATTTGACATCAGTTTTGTGAAATTGTTCTAATGTCC
TATGAcaatgattctgctgcacaTCGATATGACTATAAGTGAATATACAT
GTTGGAAGTCTTATAATAGGTGAGATTTTGTGtccaaatcaaacaatctt
gAATATCTCCTCCAAATAAAGTTTTAGTTCTGTCACCTAACTAAATGGTT
TACAGTATAATTTTCCCATCCTTTAAATCTTGAAACAATAACTCATCAAA
CTCCACATAACTATCTccaaacaaaaagaatattttctcATCATCCATTA
AATATTCCAAGTCAAAGCCTTCTTTCTTCAATTGTTCTTTTTGATATTTA
AAAGTGCTTGTCACTTGCATTTCATTGCCAACACGAACGAAAACAGGTAG
CGCATAAGATGGTAAATTGTGTTTCCAATTATCATTGAAAACTGTATTGA
TCATTCTTAAATTTATAGATGGATCATTAATGTACACCATACCAGCTCTG
CCTTCGTAACCAGGGATAGCTTGACCGTATACAATGCAATGGGTATAACT
TTCAAACGACGACGAAACAATATTCTCGATTTCAACCGTTGATACATTTT
CACCTTTCCATCGAAATGTGTCTCCTAAACGATCTAAGAAATATAGATAT
CCGAATTGATCAGTCATAAGTAAATCTCCAGTCATAAAATAACTATCACC
TGACTGAAAAACGTTACGGGCCACCTTCTTGACGGAATCATTCTTTTGTA
CATATCCATAATACGGTTGATTATTATTGATTAGTCCAACCATAGTGCCA
GGCTCACCAGGCTCACACTCAATACAGAATCCATTATCGTCTCTGATCAA
TTCACCAgtattttgatcaattttaacCAATGTCTTTAGATTCAAAAATG
GAAAACATTTGAAGAGAAAACCAACAGCACCATCAGTATTATCATCGTTA
ATGAAACCAACGTTAGATTCAGTTGCACCATAAAACTCATAAATGTGCTC
AATATTGAATCTAGATCTGAGCTGAGTGAACAAGGATCTTCGTAAACCAT
TACCTACAATCTTTTTAATATGGTGCTGGCGATCAATCTCTTTCTCTGGT
TGCGCTAAAAGATATCTCATCATTTCGCCAATATAACCAACATAGGTTAC
ATTGTATTTCCTACAATCTTCAAGGAACTTTGATGCGCTGAACTTCTTTC
TAAACACCATAGTAGAGCCACAAAGGATGGTTCCAGCAAAGAATATTAAA
CTACCGCTGGTATGATACATTGGTAATGTGTTGTAAACAATATCATTGGT
GTCAATACTGGTTAAGTATCTGAAGATGAGATAACCTGCAGTGAACTTCT
TGCGTGCCATCACTGCTGGCTTTGGATGTCCCGTTGTGCCAGAGGTGAAA
ACATAGGCTACTGGATAGTCAGGAGAAATGCCATAGTCTATTTGAGGAAG
GTCAGAAGAGACATTCTTTAGCAGCAATTCAAGATTATTTTTACTATTCG
ATTTTTCaccaaaagtaaaaaataatttacctgAGTCATTGTCAACAAGG
TTTAAATTACGCAAGGTTTCTTCCAAATCAGTATGGTAAATGATGGCTTT
AAATTCCATAACATTTAAGGAATGTTTTAATGTTTCACCCACTTGGTTGA
TGTTTATGAATGCTGCGCTAACACCAATACTTGATAAGCCAAGATACATT
GGAATATACTCGATTTGGTTAGGCAACATTATTGCAACATTGTCTCCTTT
AGTAAAACCATTTGCTTGAAAGAAATTAGCAATTTTGTGAGTGAGCTTTA
AGAATTCATTGAATGTTAAGCTCTGGTCAGTTTCAGCATCAATGATGGCA
ATTTTGTCAGGATACTTTTTGGCAATGTTGGCAAATAATTCACACAAAGG
TTTTCTTTGTAGTTTCTTCAAGTTAATCACCATCCGAATGATTTTGGACA
GAAATTTCAATTCTCTTGGCAAGCAATAAATCATTACTGGTAACCTCTGG
TAATTTGTGATCAATAGCAATGTCATGGTCGTTAATATTGTATTCGTGAA
ACCAAATATTGAAGTTAAAATAGCAATTACGCTGAGTATCAACATCATTT
TTATAGaaaccatttttttcttttgttgcaAAAGATATCTTGTGTGAGCA
CACTTTTTTTTCTGTTTGCAATAATTCTGAGAGAGAGaataaaaaacaat
ggaatgttAAAAATGCAGTTAAAAATATAAACAGTTTATAATGTTAGTGG
ACATTTAATTGAAAAGtcttaaaaattgaaaccaTTAGAAACAGCTTTTT
GGTGAGGGAAATCTGAAAACAGACTCAGAAATGCTTAGGTCAAGGCTTAC
ACAGCTGAAAGATGCTTTAAAGGAAATAATTTTATTGACGATGCTTACAG
TGAATCAAGCTCAAAATATACTTAAATTTGCTTAGATTTTAATTCTTGGC
TAAGAAGTTGAACATTCAAATTTCTATGAAATGTTCCAATCCCTATACTA
AACattccaatttttcagaaatcttTGCCATTTATTCACTAAAAAGCGTA
ATGAAGAATGTaaatgcttagcatatgcttaaacTTATCCCATATCTCAG
CCTAGATAGTCTTCAATATTAGTATGTAATATTTTAAATTCTCACAAATT
TATTATAGAGGAAAAGCAAAATCAAAGTTTGGATATAATTCAAATTTGGT
TCATTGTTCAGAAAttgtttaaaaacattttcaattctcactgaaaaaag
gccaaaacaagcaacatgctgaatggacctacctgagatAGAAACATGCG
AGGGGcaaatcacaaaaataaatctcgtacacaattttataaatcaaaaa
taaatccaaaataaatcataaatcaaaaataaatccaaaataaatcataa
atcaaaaataaatcagaaatgaatcaataaatcaaaaataaatcagaaat
aaatcaataaatcaaaaataaatcagaaataaatcaaaaatacttcgaaa
aaaaaattgacttttcaactttttttaattttttcaactttttttaattt
tttgacaataattttgattatcagttcgttataatttgaaaaatcttttc
cataaaattactccttttcataaataagagataaatcaaaaatagttcaa
aaataaatcatgaataaatcataaatcaaaaataaataaaaaataaataa
aaaataaataaaaaataaatcatgaatcaaaaataaatcataaataaatc
ataaatcaaaaataaatcaagaataaatcataaatcataaataaatcaaa
aataaatcataaatcaaaaataaatcaaaaataaatcataaatcaaaaat
aaatcataaatcacgtACACCAAttttcgagtgatttgcccctcggaaac
atgctgaatgaagatgaaaacgtTCAAACGAAAAACGAAATCGTtgaaca
atcattcagaacacaaatatgacaatctattaaaattagtcgtttgtttc
ttataaaaaaacgtttagaaaccaaaatttcatgctattgaaatgttctt
ttatattcaagactttgtgagcaaaaaaacatctatctcatcaaaaaatt
gagtaatttggctaagaacattgatgtagcttattaatagtgattcttat
agataaagagcgttttttgagctgaaaaattctttttttacaaaaatctg
cttgagccatctttatctacttccatgcaaaaaaatcagaaaaaaacaat
gatccaatatttcacaaagtccaaaaaacccttttttagccgttttttgg
cctaaatttgcccaaaaacattttttttttcgaaaattgggctccatcac
attcgagggtttataattaagcatctttgtgcaaaaaatcataaagaatg
aaagagccaatctcgagaagggctaatacctaagtaattgatagtgtgct
tataaaaaaatatcaaatttggccagtttttctataaaaacacgccaagc
aaccaaaatttcatgtctaaacacgcatattcttcaaaagtaagtcctca
tgagcaaaaaaaacatctatctcataaaaatattgagtaatttgactaag
aacattgatgtatgcttattaatagtgattcttatagataaacatgcgtt
ttttgagccaaaaaaatttttttttgcaaaaatctgcttgagtcatcttt
tacctatgattgtaccctactttcatgcaaaaaatcagaaaaaattaatg
atccaatttttcacaaagtccaaaaaacctgttttttagccgttttttgg
cccaaatttggctaaaatcgggctccgtcacattttggccaccaccattt
tgcacctttgtaccaaaaatcaaaagattcctatgattcaatatcgagaa
aagttggtaacgaacggacggacaaacggacagaggttaatttataggac
ctcaaccccaccggggtaggtccaaaagatGATGAAGCTTGTTTGACACT
GGCTTTTCGATGTTTTAGAGGTAAGGAACCATACTAAGTTTTGGgcacaa
ataaaaaacaatcctttctTTCAAGTAAAGATAACTCTAGCTCTAAAGAT
AAAATCTAATGAAACAACTTCCACAAATCCAAAATTTGGCTCAAATTCGg
ctaaaactttttctttaaaaaaatcttgaagtcTTACATTTTAAGGATTA
CAATTTCGCATCACTGtataaaaaatcaggaaaaactaaagaaggaattt
cacacaaagtccgaACAACCCcattttaggcactttttggctcTAATTTG
CGAAAAAAATCGGGCTCTATCAGATTTTAAACAatgccattttacatcag
tgtgcaaaaaatcagaaaaaaataccaagttGATCgatagaaatgctcat
tttgcCTAGAAATGAcaatagggaatttccccaaataagaaaatccaatt
tttacaGTCAAAaatagatttccaaaaaaaaacagcttCAGTTCTTGGAG
AACGTTGCCCtttatctttatgcaaaaatttagaaaaacaaataatgcaa
tttcacacaaagtccccaaaaacacttttttagGCCCTTTTTGTCGCAAA
TCTgaccaaaaattattttttcaaatattggaCTCCCTCAGATTTCAAAC
ATAACGATTTTACATcatcgtgcaaaaaatcagaaaataccAAGGCAATC
ACAAGAAATGctaattttccctaaaaatgataaaagggaatttccccaaa
taagaaaattagatttttacggccaaaaaaagttttttcgaaaaaaaaca
gcTTCAGTTGGAAAATCAGGCTTTgtcactttttttttacttttagaaGT
GTCGAAGGTTATTCAACATCATCAGAAGTACAATTGACTTTAATCACAGT
ACAGTagtaaaatattttacagaatgAATGTCACTTCAGAGACAAACACT
GGCCATTTATTGGATCTCTGGCCAATATCAATCGCTACTGGACCAGTTGT
GGCACCATAACTTTCTGCAAAAAGagactactaaaaaccacattaCTTTA
ACACACCAGGTTAGCCCTGGATCATAGAGGTATACCTTTATATTTTTACT
TTCAAGTCAACAACAAGGGTCTTGTGGCTGGTCACCCAGGCATTTTGCCA
AATCCTGAGGAACAGCTGCACATGACAGTGAATCTGATATTCCCATGTGC
AGCTGACCAGGTAAGGCGGTCattgaaaaaatgctctgttcgcgtcgcaa
tgggtgttaaaaatgcatgcgggcggacgggcggtcaaaaaaaTTCCTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00066899-exon-scaffold_462-1491911889:743841..745209 | TCONS_00066899-exon-scaffold_462-1491911889:743841..745209 | Clytia hemisphaerica | exon |
| TCONS_00066899-exon-scaffold_462-1510915933:743841..745209 | TCONS_00066899-exon-scaffold_462-1510915933:743841..745209 | Clytia hemisphaerica | exon |
| TCONS_00066899-exon-scaffold_462-1575043694:743841..745209 | TCONS_00066899-exon-scaffold_462-1575043694:743841..745209 | Clytia hemisphaerica | exon |
| TCONS_00066899-exon-scaffold_462-1491911889:751587..752039 | TCONS_00066899-exon-scaffold_462-1491911889:751587..752039 | Clytia hemisphaerica | exon |
| TCONS_00066899-exon-scaffold_462-1510915933:751587..752039 | TCONS_00066899-exon-scaffold_462-1510915933:751587..752039 | Clytia hemisphaerica | exon |
| TCONS_00066899-exon-scaffold_462-1575043694:751587..752039 | TCONS_00066899-exon-scaffold_462-1575043694:751587..752039 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_462 | supercontig | scaffold_462:743841..752039 + |
Blast
The following BLAST results are available for this feature:
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