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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00066897 ID=TCONS_00066897|Name=TCONS_00066897|organism=Clytia hemisphaerica|type=transcript|length=1416bp
GTTGTTGCATTTGGATTAGAACGTAATTTACTTTTTGATAATCACCACGA
AAAGATAGAATTTTCACCATGATGTTAACCAAATCGAGGAGTCAATCAAT
GCTACTTTTAATTCTATTATCATTGAGATTTGAAGAATCTTACCAATTAC
CGACGCTGTCAGAGGATTTGAAGTTCTGCAAAGCACAACCAAATTTTAGC
CAAGAACAAATGGAGTTTTGTTACCAGAATACTAACTTGGTAAAGAATTT
GATAGAAGGATATCAGTTAGGACATCAGCTTTGCCAGGAAGCTTTCCAGA
ACGGTGCTGGTGGTACACGGTGGAATTGTACAAATAAAATTGCTAAGAAc
aacaaaaatgttttgtttggtGTTGCTCATCCAAGAGAAGGTTCAAAGGA
GCATGCTATCCTCATGTCATTCACATCAGCCGGAATGCTATATAATCTCA
TCAAAGCATGCCAAAGTAACGAATTCTCATCTTGCAAATATACCGACATT
TACAACTGCCGACGGTCTTTATCGGGAGGCTGTTACCACTTGGACACTCA
AGTTCCCTTACGATTGATAAGAACTTTCTTCTCATcctcaaaattctcaa
aatcaaGATATCAAAAATTGCTGAACCAACATAATCGGGAGCTAGGCTTA
CAGAAAGTAAAGAGTTTGATTCGTATACGATTCGGTCGTGAACACTTATC
ACCACTCAAAGGCGTTATACCATCTTTAAAAGATATTTATATTAACCAAA
ACCAACGTATCAAACGGAAATACACCAAGGAAAAAATACCTACAAAACTC
TTAACACTAAGATCAAAACTGGTATACACATTGCGAGATGGGCGCTTTAA
TTATTGTAACCAAAATGAGAATTGGCTTTGGAATGGTATAGGTCGTAGAg
cttgtgaaattgaaactaaaTACTACCACTCATTTGAGAACTGTGTCAAT
ATGTGTTGTGATTATGGATACGTAAATATTCCAGAACTCAAAGAAGTCTG
CGTCGGCGAGAACAGTAAAAGGGAGTGTCAAGTGCAGACcattaataaat
atttttgcaaaTATGCACATGAGGCTGTACGGTCGTTTCAAGATATACCA
TGGCATGATTTTCGCTGAGACTTCTTCACAGCTTACACACAACCTCAATA
CGACGTTTTATGGATGTTATAAATATTGGATATGGAGGAACGAGGTATGG
CAGTTGAGTTGATAATGGATTCCTTACACTTAAAAGCGAGAAAAACTTCT
GTGCTAATTGTTATGGAAGATTTATATAAACTTAAGATTTCAGAATAAAc
ttgtatttaaaaaatgtgaatttatttttattttaaattgattGTACAGA
AAACGTTGTAGATAATTATTTGTGAAATTGTTATATAATTTGAATttata
ataaagatatttcgta Run BLAST on NCBI protein sequence of TCONS_00066897-protein >TCONS_00066897-protein ID=TCONS_00066897-protein|Name=TCONS_00066897-protein|organism=Clytia hemisphaerica|type=polypeptide|length=349bp
MMLTKSRSQSMLLLILLSLRFEESYQLPTLSEDLKFCKAQPNFSQEQMEF
CYQNTNLVKNLIEGYQLGHQLCQEAFQNGAGGTRWNCTNKIAKNNKNVLF
GVAHPREGSKEHAILMSFTSAGMLYNLIKACQSNEFSSCKYTDIYNCRRS
LSGGCYHLDTQVPLRLIRTFFSSSKFSKSRYQKLLNQHNRELGLQKVKSL
IRIRFGREHLSPLKGVIPSLKDIYINQNQRIKRKYTKEKIPTKLLTLRSK
LVYTLRDGRFNYCNQNENWLWNGIGRRACEIETKYYHSFENCVNMCCDYG
YVNIPELKEVCVGENSKRECQVQTINKYFCKYAHEAVRSFQDIPWHDFR Run BLAST on NCBI transcript from alignment at scaffold_462:651574..654316+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00066897 ID=TCONS_00066897|Name=TCONS_00066897|organism=Clytia hemisphaerica|type=transcript|length=2743bp|location=Sequence derived from alignment at scaffold_462:651574..654316+ (Clytia hemisphaerica)
GTTGTTGCATTTGGATTAGAACGTAATTTACTTTTTGATAATCACCACGA
AAAGATAGAATTTTCACCATGATGTTAACCAAATCGAGGAGTCAATCAAT
GCTACTTTTAATTCTATTATCATTGAGATTTGAAGAATCTTACCAATTAC
CGACGCTGTCAGAGGATTTGAAGTTCTGCAAAGCACAACCAAATTTTAGC
CAAGAACAAATGGAGTTTTGTTACCAGAATACTAACTTGGTAAAGAATTT
GATAGAAGGATATCAGTTAGGACATCAGCTTTGCCAGGAAGCTTTCCAGA
ACGGTGCTGGTGGTACACGGTGGAATTGTACAAATAAAATTGCTAAGAAc
aacaaaaatgttttgtttggtGTTGCTCATCCAAGAGGTAATTTGATTAA
ATCTTTAAACAACCTCGTTCCCAGAGGAAATTGTACAACTCATAATCACT
ATTATAAAATGGCAAACAGCAAAATAAGGGACGTGGTACGGCTTTGATCT
ATAATATGTACACCCCAACCCctagcatttattttcttataggCTCCTTA
ATTTTATCCCTACTGCCAAAATTATTCTTGAACTACAGTTTCGAGTAAAA
GGGCTGCAGCCAGGAGGTAGCTTGTGTGTATCAAATtcttaaaagtttct
tcaagcaggaaaaataattcaaatattttagaCACTAtggcataatataa
caaaaaaaaGAGACAACCAATTTTTGTAACACGCTCATTAAAGGGAAAAC
AATTAAGTTTCAGTAGTTAGGAAAGAAAAAACGATCGTAAAATTCTATGA
AACATCCATTTTGGTCAACCACTAGGTCCATTTGCTAGCCAAAACATACC
TTGTTTTCCTATCAATTGAAAGCCATTATCAGAAATTTTTTCCCACAATG
TCAgtaaaaaaaatgttgttttcgTCGTAAAAAATATTGCGGGTGTCTGT
AAACTTTGGAGCCATCTTAAATGTAATTTGGTTAGATCTACATCAGAAAT
ATTTCTGTTTGTTATAttaataatacaataatgacgTCAGACTAATTATC
GTACAATTAAATAAGGCATTTATCTCAGCATTaaacaaaattgacaaaaa
gtagcaaaatttcAACATCTCTAAACCACTGTACCAAAATATTTTACCTA
TTAAAACGTGTGTTCTTACTACACCCATAAAACTCCAATGATAGCTCAAT
GGTCAGTATCTTCTTCTTCTACAATCATACCCAAATGCACATTCAAAAGA
GTCcataatatataaaaaagcaaCAGGAACCCTTtcagcaaaatttcttc
ttcttttcattatAGAAGGTTCAAAGGAGCATGCTATCCTCATGTCATTC
ACATCAGCCGGAATGCTATATAATCTCATCAAAGCATGCCAAAGTAACGA
ATTCTCATCTTGCAAATATACCGACATTTACAACTGCCGACGGTCTTTAT
CGGGAGGCTGTTACCACTTGGACACTCAAGTTCCCTTACGATTGATAAGA
ACTTTCTTCTCATcctcaaaattctcaaaatcaaGATATCAAAAATTGCT
GAACCAACATAATCGGGAGCTAGGCTTACAGGTAAGAAAGACTTTATCAA
TCAGATTACTGTATAATCCATTTGCTTTCGATGGAATAGCAAGTCTATTG
TAAAATAGGCTGTTGGGATCCTCGAACAAAGTGTGCTAGCAGTGACTTCG
TAGGGCTAAGCCAATTAAACGacagtctctttaactcgaacctctataat
tcgaacaagtttCATGGTCCTTTCAGTTaataatgccttataaaccaatt
tccatatttcgaaattttcttaactcgaaaaaatttGTCCTCCCCATGAg
tgctcgagttatggagactccattgAAATTCTGAAATGTCTCTTCTCTTT
CATCTCAATTTGAAACTTCTTTGTTAATTTCCTTTGTAATAAATCGCAtc
ttaaatttcatttttcttttctgtttgtAGAAAGTAAAGAGTTTGATTCG
TATACGATTCGGTCGTGAACACTTATCACCACTCAAAGGCGTTATACCAT
CTTTAAAAGATATTTATATTAACCAAAACCAACGTATCAAACGGAAATAC
ACCAAGGAAAAAATACCTACAAAACTCTTAACACTAAGATCAAAACTGGT
ATACACATTGCGAGATGGGCGCTTTAATTATTGTAACCAAAATGAGAATT
GGCTTTGGAATGGTATAGGTCGTAGAgcttgtgaaattgaaactaaaTAC
TACCACTCATTTGAGAACTGTGTCAATATGTGTTGTGATTATGGATACGT
AAATATTCCAGAACTCAAAGAAGTCTGCGTCGGCGAGAACAGTAAAAGGG
AGTGTCAAGTGCAGACcattaataaatatttttgcaaaTATGCACATGAG
GCTGTACGGTCGTTTCAAGATATACCATGGCATGATTTTCGCTGAGACTT
CTTCACAGCTTACACACAACCTCAATACGACGTTTTATGGATGTTATAAA
TATTGGATATGGAGGAACGAGGTATGGCAGTTGAGTTGATAATGGATTCC
TTACACTTAAAAGCGAGAAAAACTTCTGTGCTAATTGTTATGGAAGATTT
ATATAAACTTAAGATTTCAGAATAAActtgtatttaaaaaatgtgaattt
atttttattttaaattgattGTACAGAAAACGTTGTAGATAATTATTTGT
GAAATTGTTATATAATTTGAATttataataaagatatttcgta Coding sequence (CDS) from alignment at scaffold_462:651574..654316+ >TCONS_00066897 ID=TCONS_00066897|Name=TCONS_00066897|organism=Clytia hemisphaerica|type=CDS|length=3150bp|location=Sequence derived from alignment at scaffold_462:651574..654316+ (Clytia hemisphaerica)
ATGATGTTAACCAAATCGAGGAGTCAATCAATGCTACTTTTAATTCTATT
ATCATTGAGATTTGAAGAATCTTACCAATTACCGACGCTGTCAGAGGATT
TGAAGTTCTGCAAAGCACAACCAAATTTTAGCCAAGAACAAATGGAGTTT
TGTTACCAGAATACTAACTTGGTAAAGAATTTGATAGAAGGATATCAGTT
AGGACATCAGCTTTGCCAGGAAGCTTTCCAGAACGGTGCTGGTGGTACAC
GGTGGAATTGTACAAATAAAATTGCTAAGAAcaacaaaaatgttttgttt
ggtGTTGCTCATCCAAGAGAAGGTTCAAAGGAGCATGCTATCCTCATGTC
ATTCACATCAGCCGGAATGCTATATAATCTCATCAAAGCATGCCAAAGTA
ACGAATTCTCATCTTGCAAATATACCGACATTTACAACTGCCGACGGTCT
TTATCGGGAGGCTGTTACCACTTGGACACTCAAGTTCCCTTACGATTGAT
AAGAACTTTCTTCTCATcctcaaaattctcaaaatcaaGATATCAAAAAT
TGCTGAACCAACATAATCGGGAGCTAGGCTTACAGAAAGTAAAGAGTTTG
ATTCGTATACGATTCGGTCGTGAACACTTATCACCACTCAAAGGCGTTAT
ACCATCTTTAAAAGATATTTATATTAACCAAAACCAACGTATCAAACGGA
AATACACCAAGGAAAAAATACCTACAAAACTCTTAACACTAAGATCAAAA
CTGGTATACACATTGCGAGATGGGCGCTTTAATTATTGTAACCAAAATGA
GAATTGGCTTTGGAATGGTATAGGTCGTAGAgcttgtgaaattgaaacta
aaTACTACCACTCATTTGAGAACTGTGTCAATATGTGTTGTGATTATGGA
TACGTAAATATTCCAGAACTCAAAGAAGTCTGCGTCGGCGAGAACAGTAA
AAGGGAGTGTCAAGTGCAGACcattaataaatatttttgcaaaTATGCAC
ATGAGGCTGTACGGTCGTTTCAAGATATACCATGGCATGATTTTCGCTGA
ATGATGTTAACCAAATCGAGGAGTCAATCAATGCTACTTTTAATTCTATT
ATCATTGAGATTTGAAGAATCTTACCAATTACCGACGCTGTCAGAGGATT
TGAAGTTCTGCAAAGCACAACCAAATTTTAGCCAAGAACAAATGGAGTTT
TGTTACCAGAATACTAACTTGGTAAAGAATTTGATAGAAGGATATCAGTT
AGGACATCAGCTTTGCCAGGAAGCTTTCCAGAACGGTGCTGGTGGTACAC
GGTGGAATTGTACAAATAAAATTGCTAAGAAcaacaaaaatgttttgttt
ggtGTTGCTCATCCAAGAGAAGGTTCAAAGGAGCATGCTATCCTCATGTC
ATTCACATCAGCCGGAATGCTATATAATCTCATCAAAGCATGCCAAAGTA
ACGAATTCTCATCTTGCAAATATACCGACATTTACAACTGCCGACGGTCT
TTATCGGGAGGCTGTTACCACTTGGACACTCAAGTTCCCTTACGATTGAT
AAGAACTTTCTTCTCATcctcaaaattctcaaaatcaaGATATCAAAAAT
TGCTGAACCAACATAATCGGGAGCTAGGCTTACAGAAAGTAAAGAGTTTG
ATTCGTATACGATTCGGTCGTGAACACTTATCACCACTCAAAGGCGTTAT
ACCATCTTTAAAAGATATTTATATTAACCAAAACCAACGTATCAAACGGA
AATACACCAAGGAAAAAATACCTACAAAACTCTTAACACTAAGATCAAAA
CTGGTATACACATTGCGAGATGGGCGCTTTAATTATTGTAACCAAAATGA
GAATTGGCTTTGGAATGGTATAGGTCGTAGAgcttgtgaaattgaaacta
aaTACTACCACTCATTTGAGAACTGTGTCAATATGTGTTGTGATTATGGA
TACGTAAATATTCCAGAACTCAAAGAAGTCTGCGTCGGCGAGAACAGTAA
AAGGGAGTGTCAAGTGCAGACcattaataaatatttttgcaaaTATGCAC
ATGAGGCTGTACGGTCGTTTCAAGATATACCATGGCATGATTTTCGCTGA
ATGATGTTAACCAAATCGAGGAGTCAATCAATGCTACTTTTAATTCTATT
ATCATTGAGATTTGAAGAATCTTACCAATTACCGACGCTGTCAGAGGATT
TGAAGTTCTGCAAAGCACAACCAAATTTTAGCCAAGAACAAATGGAGTTT
TGTTACCAGAATACTAACTTGGTAAAGAATTTGATAGAAGGATATCAGTT
AGGACATCAGCTTTGCCAGGAAGCTTTCCAGAACGGTGCTGGTGGTACAC
GGTGGAATTGTACAAATAAAATTGCTAAGAAcaacaaaaatgttttgttt
ggtGTTGCTCATCCAAGAGAAGGTTCAAAGGAGCATGCTATCCTCATGTC
ATTCACATCAGCCGGAATGCTATATAATCTCATCAAAGCATGCCAAAGTA
ACGAATTCTCATCTTGCAAATATACCGACATTTACAACTGCCGACGGTCT
TTATCGGGAGGCTGTTACCACTTGGACACTCAAGTTCCCTTACGATTGAT
AAGAACTTTCTTCTCATcctcaaaattctcaaaatcaaGATATCAAAAAT
TGCTGAACCAACATAATCGGGAGCTAGGCTTACAGAAAGTAAAGAGTTTG
ATTCGTATACGATTCGGTCGTGAACACTTATCACCACTCAAAGGCGTTAT
ACCATCTTTAAAAGATATTTATATTAACCAAAACCAACGTATCAAACGGA
AATACACCAAGGAAAAAATACCTACAAAACTCTTAACACTAAGATCAAAA
CTGGTATACACATTGCGAGATGGGCGCTTTAATTATTGTAACCAAAATGA
GAATTGGCTTTGGAATGGTATAGGTCGTAGAgcttgtgaaattgaaacta
aaTACTACCACTCATTTGAGAACTGTGTCAATATGTGTTGTGATTATGGA
TACGTAAATATTCCAGAACTCAAAGAAGTCTGCGTCGGCGAGAACAGTAA
AAGGGAGTGTCAAGTGCAGACcattaataaatatttttgcaaaTATGCAC
ATGAGGCTGTACGGTCGTTTCAAGATATACCATGGCATGATTTTCGCTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00066897-exon-scaffold_462-1491911889:651574..651960 | TCONS_00066897-exon-scaffold_462-1491911889:651574..651960 | Clytia hemisphaerica | exon |
| TCONS_00066897-exon-scaffold_462-1510915933:651574..651960 | TCONS_00066897-exon-scaffold_462-1510915933:651574..651960 | Clytia hemisphaerica | exon |
| TCONS_00066897-exon-scaffold_462-1575043694:651574..651960 | TCONS_00066897-exon-scaffold_462-1575043694:651574..651960 | Clytia hemisphaerica | exon |
| TCONS_00066897-exon-scaffold_462-1491911889:652889..653154 | TCONS_00066897-exon-scaffold_462-1491911889:652889..653154 | Clytia hemisphaerica | exon |
| TCONS_00066897-exon-scaffold_462-1510915933:652889..653154 | TCONS_00066897-exon-scaffold_462-1510915933:652889..653154 | Clytia hemisphaerica | exon |
| TCONS_00066897-exon-scaffold_462-1575043694:652889..653154 | TCONS_00066897-exon-scaffold_462-1575043694:652889..653154 | Clytia hemisphaerica | exon |
| TCONS_00066897-exon-scaffold_462-1491911889:653554..654316 | TCONS_00066897-exon-scaffold_462-1491911889:653554..654316 | Clytia hemisphaerica | exon |
| TCONS_00066897-exon-scaffold_462-1510915933:653554..654316 | TCONS_00066897-exon-scaffold_462-1510915933:653554..654316 | Clytia hemisphaerica | exon |
| TCONS_00066897-exon-scaffold_462-1575043694:653554..654316 | TCONS_00066897-exon-scaffold_462-1575043694:653554..654316 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_462 | supercontig | scaffold_462:651574..654316 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR005817 | Wnt |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0005102 | receptor binding |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0007275 | multicellular organism development |
| GO:0016055 | Wnt signaling pathway |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0005576 | extracellular region |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0007275 |
multicellular organism development |
| biological_process |
GO:0016055 |
Wnt signaling pathway |
| cellular_component |
GO:0005576 |
extracellular region |
| molecular_function |
GO:0005102 |
receptor binding |
Blast
The following BLAST results are available for this feature:
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