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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00066872 ID=TCONS_00066872|Name=TCONS_00066872|organism=Clytia hemisphaerica|type=transcript|length=270bp
gcgaaaaaaaatattctttgagTGAAAATACGCACAATATCTTTCAAATT
TGCGTACAGTAAAGTTGAAGCAACGAAATGAgttttgtttcaatttgttt
ttgatGATGTCTTCACTACTACTTGAAGGAAAGATTGAGGAACTAGAAAA
TTTTACATTAAATGCTACGGGTGATTCAACTATGGTTGGAAATGTATGTT
TGCAAATGGCCACTGATTTCACTACCAAATACCAGgGGGTCCCCGACACG
ATCACCTTTATGAACTGAAC Run BLAST on NCBI transcript from alignment at scaffold_462:440787..450864+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00066872 ID=TCONS_00066872|Name=TCONS_00066872|organism=Clytia hemisphaerica|type=transcript|length=10078bp|location=Sequence derived from alignment at scaffold_462:440787..450864+ (Clytia hemisphaerica)
gcgaaaaaaaatattctttgagTGAAAATACGCACAATATCTTTCAAATT
TGCGTACAGTAAAGTTGAAGCAACGAAATGAgttttgtttcaatttgttt
ttgatGATGTCTTCACTACTACTTGAAGGAAAGATTGAGGAACTAGAAAA
TTTTACATTAAATGCTACGGGTGATTCAACTATGGTTGGAAATGTATGTT
TGCAAATGGCCACTGATTTCACTACCAAATACCAGGTGAGCTcataattt
attttgatttcattaaTTCAGGTTTGATTTTAAATATATGGCCTGTAACA
ACCCATAAAAAACAGTCCtctaaaatcaaattcaaaatactcAAATTTGG
GTCCACCAGTGAGGTTTCTTCTGTGTATATAAACTGTTGACCATTGCAGA
CTTTTTCATCATAATAGGGAGTTTTTTCCATCTGGTAGAACCTTTGGTTT
AGCTCCTTTagctttatatatttttttttaaactcgaCTAGCTAAGATGT
ATTCGGAAAGTCTTTGAAGCTCCTATTTTCTCCAAAGTTATAAATTAAAC
TCAGAGACTTTAATCTCTTCGGTAATTGGTGTGGTCTTTTGTTCCGTGTT
AATTCGCTAGGCTTTGTTTTTTGGTGATACCGTATTTAATCGATCATAGT
GCAAAGGTTTAGCATTCGGCTACGGTGTGCAAGATTTCAATCCCTgactg
ggtcataccaaagactttgTAATTGGTTTAAAATACTACTTGAGGCGTCT
CTGCttaaagttaaagttaaaataAAGATGAAGGGTAAGTTGGACATTCC
GGAAATCTAAGCAGTTGCAGACTTACTTAATTAATCTACTAAATAGTGCG
TATAACACGGTGATCTTTGGACACTAattcaaatctaaaatttcaCTGTG
AAATGAAATACTTTACGTTCTTAATCGATGAGTCAATACAATCTGTAAAC
AAAAGCGTCTCTGAGAAAATATACCAAGTCTGCAGtaaacgcttttttta
ataaaaatacgctttataagaatgtccatatgatgaaaatggcaaaaaaa
ttgagaatatcaccatcatgcaATTTTGCTACTGAAGCTAAGGATGCCAT
TATTAGGGcatttttaattacaaattgtcaattaccccaagtaaggctca
ctcctttcacaaaaatgccattttatgcttgagatgcatgtactaaatgt
taaatctagtctgaattaggattctaacctaagaatgctgtaacaatatt
ttaggatgattttcccaaaaaagttaagaatatccatgatgaaatggatt
ttacaccattcttataaaaaagcgtgtaataacCACAAGAAAAAGTGGAC
aacttgaaactttttttgtttttgatgcaATAGTTATGTAgttatttttt
tgtcattatgaaCCTCCTGGTACTTAAAGTCCAGTGAATGTTTTAGGGTG
TGTTTCTATGGAACCCCCGAAGAAGGATGAGAAgttattgataaaatttt
tttttgacgaatAAGATTACTAGAATTAGATCACGTGATGCGAAATAAAA
CCTTTCATTAAACCTTTCCAGTCGACCCACTTGCCCACATCCATTTAGAC
AGTCCCTTGTTAAAAGATCGacatatttttaaatactaCAACACAAATTT
TAAGGGCAATGCTGAATCAACAGTTTGGAATATTTGGTCTTAACCCTTTG
CGTACCGCTGTCGGCAAATGCCGAcaagagcattttcgatttctttgccg
gtGTCGTCATTTGCTGACAAGAGAGATCTCGACCTATTTGCCGGaggttt
ttttaagtttattgaaagttcgattttgaactaGATTTTATTAAATAGCA
TAgatgaatacacgctttttttttataagaatacactttataagaatgtc
catgatgaaaatggccaaaaaattaagaatatgctaagaatatcaccatc
atagaatNNataaattgtcaattacccccaagtaaggctcacctctttca
caaaaatgcaatcttatgcttgagactatgtattaaatgttaaatctagt
ctgaattaggatcctaacctaagaatgctgtaagaatattttaggatgat
tttcccaaaaaagttaagaatatccatgattaaatggatttacaccattc
ttataaaaaaaaaagcgtgtaattaaaatatatttcaaagatgtttttca
taattataaattttttaacTCAAAGTATATTCTTATGATATTTCTGAtat
ctttcagaaaataaagctaAATGTGATGGCAAATAggtcaaacattcatt
ttttttttcagtggcaAATAGAAAATACGAACGGCAGTAAAAAATTGGAC
CCTCTGATTATTATTTTGTATCACTGACAGTCTAATGTTTAAACAAAAAC
CCTTTTACGGGTGCAAGCTTGGGGTTAATTTTGAGTgtaattttaaatta
ttcaatAAAAATGTTTGCAAATTCACGTTTCATTAAAATTAAAGAAGCTC
GACTTTTGGGTCTTGTTTAAACCCTGAAAATGCGAAAATTGGACCAAATC
CCTCTTATACTAGGGGTATCTAGGGGGTTTTCATAAAACTTGAATGTTGT
TTTTGTATTCTACatgaaaaattggacaaaagtggaaagtttcatcgaaa
tttgataaacttgatttttgggtcattttttgCCCCAAAAGCCCGGAATT
GGGCCCAAAACCCCCAATTTTACCCCCTATAAGAcccaaataaacaaaaa
aacaatattgCCATTCAGTTCTACACCATTTAATTGTGTTATATTCGTAG
TTTCATTAGAATTGGACGACATcgactttttttgcatttttgccCTGGGG
ACACTCATCGGGGACGCAAAGTCTTAAAGGGTTAAGCTGCTGGTTTATTA
AATTATGTTTGAGTAACTAACTTAGCCAAGACAAGTAAGATGTAGACGTG
AGGAGACAAAAAGCTTCACAACGATGAGGTGGATTACATTAACACAAACA
TACATGTTTTCTTACTTAATCTTTGCAATGATGCTTATTATTGGATTAAT
GTGCTATATATAGGTATATATAGGGatgtatatctatagaggtctgcaat
tcagactaAATGAAACCTAGTTTTGTTTTGTACTTACTTTAATTAGGACT
AAGTAATTGGGTTATAGACCACGATGACTTTCCACGCTTTTAATTTCGAT
ATTATACTTCCCCAAGTATAAAGATAGATCAAACTAGcttgaattatttt
caaaatgcgacatttatgatttatttcaaGATCCATAATGAAATGATTAA
TGGTTATGGCTTCGAAGATCTGTTTACTGGTTGTTATGTCTGTATTTAGA
AAAGCATCTGATTAAAAAGGTTAACCCACTCCTGAGGCTCTCTACAATGA
CGACCTTGTCTATTTTGATGAATAAtaaggttaaaaaattaatgattgaA
AATGTTTGGACCGTGCAATAAATAACGCGGTATCCATGTCCACATCCATG
TCTCAAAGCCCACAGTGGGATGAAATTCCTATCATCGAAATCCCAAGGAg
gttagaaattctattgttcctagATCCTAGGTTAAAGAAATCCACTGGGA
TTGTGTTTTTGACTTGGATTCCATTGGATTTGGATTTTCATGAgaaagaa
agtcaatttttcagtgggtctgaaattgtagggtatttttcctaCCGTGC
ACGAAATATTGGCcaaattttctagtggggcGGGGTTCCACCGGAGCTGT
GACACAGGACTGTAATGATGATCTCCAACATCATGCAACATCTCGATTAA
TCGTTAACGATTattctttgataaaaataaCATTCTCAAATTAGCCCTTC
AAAACCACTGAAAAGCTATTTTGGATAATCTGCTACTGATTACAACTCAT
CCTGGAGTGCTTTCAAAATTatatctttttttattctttcaagTTTTTTC
TTCCAAGTGATTTTTGACGTGAACGGGGTGGGATACTTATAACTTATATT
CAAGAAGTAAAGGGAAAATAACAGTCTAGGACGCCTGAACTGAAAAAAGA
ACTGTTGGCTCACTCGGGctcaatctcgtacccagagcctcTTGCACCAC
TATTAGATTTTACTGATGGGCCTGATATACAAACTTTCGTGAGCAATATC
AGAATAAAACAAGCGAGCTAAAGGGACTGGTTTCGAGTTTACTTTTTGCT
TAAACTCAGCTGGTtacatttttcatgatttcagggctgaaagttaaaat
tttcttaaacgCTTTTAACATGCTTACTTTCTTCACCTATTATGACTAAA
TACAGGCATGAGATCAGCATTTTTAAATCACAGGCCAATTTGAGCCTCAT
TCTgttataaaattgttccataAAACAAGCGTGTGTTCTTAGACCATTCT
AAGCTGCTCTCTTATTCTTCCAGATAATGTTTCTAGACCCTGTGAAATCT
TTCAGTTCTTACTATGTTCTTAGATTTTCAGTATACTTTTTGTAACCTCG
ATGTCTCGCTTAGGGAGCTTAGTTTATTCCCCAAGATTCCAAGATTCTGG
TTGGATTTGCATTTTTCTTACTAAAAAAGTATGACAATTTTCCAAATGGC
TATTGAATGTGCTTAGATATGTTTTGCTTGACCCTAAGCATTTAAATTTT
CGAAATGAGCGCTTAACGGCTTATTCTGACggttatcagatttaaaaaat
gtgtaggACATTATAAGTACTGTTATTCATTAATCTTCTTATTCAATTAC
AGAAAACTTATAGAGGTATCAAGATAGGGTATAGAAATAATTAGTCGTCG
TGTCAAAGGCATTGGTTGCTAATATACACACTTAGAAAAATTCTCAACAT
TTTTTTCGTCGTTTCGTCTAAGAGAAAAAAGTACAAGCTTCGATAAAAGC
TTACTTGTATAAACCCTCGAGTGACTGTAGCATGAAAGTAGAgaatccag
ctacggtgcgcaagattgtgggttcgatccccagccgggtcataccccgg
ggggaggggtacttaggcaaaatgggtgccgggtatgtgcgagccataag
ggtaccttttctcattcctcaaaagtctctcaaaggggtaattcaaaagt
tagtctctgaaagggtcccaaaatcacaaaattcaaaaatttctctctca
aagggtcacgatttccaagaattttgaccaaaatttggtgaaaatcaaac
caaaatttggaaaaaatggaccaaaattttgNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNcccccccccccccgggggtcaTAC
CAATGATTCCCAAAAATAATACTTAATGCCTATCTGCTTGATGCCCAGCa
attaaagagacggatcaaagGTAAGTGGgggaaatccagggaaaggagtg
gcgcccctCCCCtacctaccttcgggtagacagctatagaaaagggagcc
tttgggtcgccctcgactgtgGTCGCAAACTTTCCTACTTATAAACCCTC
AATACTCCCATAACCATAGTGAGAATTTCCAAGGTATTTTATTTCCCACC
TACTTGACTACTACGTTTATTAATGCGTATATCAATGTCATAATAGGATA
ATTGTATAGGGTATACCTACGTCTGGGCTTATGGGGGTTCATTATATCAT
CAAAGATTTTGTTGAATACTTTGATAATTGTGAGTGTCCAATTAGAACAA
TGTTTCTAACTCTTAATGAGTTTTAATAATGATTATTATTAGAAAAATGG
GGGAGTTTAGTATGTACTTAGCTGTGCGCGATTAATTTGTCTTTGCTCAT
GATTTGTGTATTTCTGCCATAGTAACCATGTGTTTAAATGGATTTACATG
GGAGAAAATCTATGGCGACCACGTATGTGCCATTCGAACTTTAGTAAACC
TACTCATCACTCCCTCTTTTAGAACTCAAACCCACCTAAGACCATGTTTA
GACGTTACGGTTTTGTATGGTTTACAttacggatcgagagtgtttATATT
GGTTCCAGAACGTTTCGGAGTGAGAAAAGGGAGCTGTTACGTTTCGATAA
AAAAAAAGGAATGCCTTAATTATTCTAAGTTCGAGGTCTAGAGATAGAAA
AACTTGATATGTTAAGGAAAACGAAAACTGCGAAGCACTTTAGAAGAAGT
CGGAAGTGATACGTTGAAATAATAAGCTGCAAGAAGACCTCAAGCAGGAT
TTTACCACGCGGATACTAAAAAGGTTCTATGTCACGACCTCAACATTCGG
GAAAAGATTATGGTTACGGTTTGAAGTCTAAGTTTCTTACTTAATGAGAA
CTTATTCATTAACTCGTTGAATGTCATCGCACTTCATAACTTtaagtttt
taaacattttttttccaacGCCAATATTCCTTGACTAAAGCAATTAGTAC
CCGAGACATGGAGAATTGCCAACATTACCGCTTAATTAGAAAGCTTGTTT
GGTTTCGGATACGAAATTCAATGATGTTTGAATATTACTTCTGAGAAAAG
ATTGTGTTTCGTAATAATCAAACCACATAAATTTATAGGATTTTTTCTGT
ATTTCAGTTTTGGATTTTTATCTAATCTTGGTTTGGAAATCAAATCAGAG
AAGCTTCCTCCTAGTCAGAACCTGCTCTAAAATTGAATTCAAGGCTGAAA
AATTGATATGCTGTTTATAAACCGCCTTTCGCAAATAATGTATGATAATG
ATTTTAAGTTGGTATTTCAGAGTCTTCTTTTTAATCGAAATATCAAATTC
CAAGAATTCAAAGTTTCGACTGCGGATTTTTTTAAGGACAAATGAGAaat
ctttattaattttttgacgtttattTGAATCAACAGTGTGTACAGCCATA
CTGTCTGTCAAAACGTGACAAAGCGATTTTTGAACTGGTTTTATGAGTCA
AAGAGATAGGAAAATCCCGCGTTGGTAGGAAATGTGAGCTTACAAttgat
atgacgtcatcaaaaacaatTTACTGTTTTACAGCTCATTTTGCCGGAGA
TATTGACGGAGAGTATTAACTCCTGCATAAGAAAAATAGTTAAAACGATA
GCTCTCCCTCTTATACTTTGAACCCTCAAAGTTTGCTTCTGCACGTGCAA
GAGACACAAAAATTCTTGTTTGTAAGTTTATCTGTCTCTGTTGATATAAG
GTCACCTCTCAAAAACACGACTCATTTCTGACACCTTCTTGTTATATTTT
GTTAAGTCTCTTTAAATTATACGATTTGTATCAGGTATTGCAACATACAT
TTTAGTTCTTTGAACCTCAAAATCAGAACGTATCTTGTtgattaaacttt
tttttatttgccaCGCCCTTTTACAAAAGTTTCTCTATGCTAAAATTATT
CAACGATAGAGCCTCCCTCGAACACAGTGCTTGCCTGATCTCGTACACtt
tacaccttttcgaccgtagtcgcgcggtccgAGGCGCGGTCAGACGCGTG
CTACTTTATTATTCAATTCACCACCCTAAACTCGGCCTAatcctttttta
aactttttaccaTCGTCTTTAGGCGTGAAAAAAAGACTGCGACGCGTTtc
agggtggtaaaacggacaagaAAATGCCCGTGCGGCagttggcggctacg
gtcgaaaaggtgcatTGATGACGCTGATAGATACGTTGACGGGGATATAA
GATATAAATGATTAACGATTCCTTGAATTTAAGGGCACTGGCCTCTTTAC
GTCGCAGAATcctttatcggccctggctcttGAGGGTGTAATACGTCATT
GACATCGCATAACTGACATATCTCAAAAAAGGCTTGCTTAATGCGCTCAT
ATCAAATCTACGCCGTAGATCAATAAACCTAGATAATACGCAATTCTTTA
CCGTGGGATTACACTATAGCATGGGATTATGGGTATTCTAATATTTGCAA
AAGTGACATCACGTTCAAATCTCCAAATCTGTTTTCTAGCCTGCcccctt
ttcttttttaatctgCTACAGGAAAATTCACATTTTGCCAGAATGCTTCG
TTACCTTCATCCATCACTGACCTGACTATGACTTTCTGatactttaaaat
tttcatcttttatttactttcaacatttcaattttactttttctcagCCT
TTAATTCCACTTTAAACCCTATTTCATATCCGAAACAAGATTTCTCACTT
ATTATTAATCACTACTGAAAATGTAACTCTTTGAGTTAGCTGTTTCTTGG
TGGGAGAAAGATGGAACCCTGTCTGAGTGAAAACTTGTAAGATGTTTTTT
AGCTTTTGGGATGAATCAATAATGTGGTTATACGGTCTCCTGTTTTTTTA
ATGGtgtagatttcaaattaaacGAATTGGCCAACAGGAACAGAATTTTT
GCTACCAGGGAAGATTATTTAATCAGACCGTTTTAGTGGATGAAGTTGAG
TCTTAAACACTTGGAAGTAGTGTCTTTGGACAAGTGTTACCCAATGGTAG
CATTACTCGATATTGGTGAAAATAttccaaaggaaaatttcattgaatta
cTAATTGTCCCacattgagtagtgctaccataaGGGTACCAACCGTCTAA
AATATCATCTCTTAGATGGCCTGCTAAAGCTTGGTCATCTAAAGGTCAGT
TGGTACTAGAAAAGAGGAATGAGTATCGAGGTGTAAATACGTAACAAAAT
TGTGAACAAGTCTTCTTCATCTAAGATCTCAAATAGTTTTCATGGTTACC
TTTAATTCTGACTGGAGGCATACCCGAGGCATATACTAAATAGAAAGTCA
ATTCCTCTTCAATGTCCACATATGACGGTCATTTTATATCACACGTTAAA
TTTAGGGGTGAGAAGGATATTCATCTAAATAAGATCTTAATAACCATAGT
TAccataattttattttcattgaacATGCTGAATAAACTGTCTTCACAGT
TTGGTTTTTGAATCTTAGCGTAAAACTTAAGGTTTGGAAGCATCGAGCCA
GCATTATTCTCACTAAGGATTTCAAAACTACATGTACATGCCCGAAAGGT
ATCAAGAGTATTACCCAAAATGTCAATATTTAAATTTTAGTACGATGATC
TACTTTACGTGACATATTTGTCATTAACATATGggtcaattttgtatttt
ttcctcGCATAGCATTACAATACTGTACAAACATGCAAACAAATAAACAA
GTACGCTGGCTCTCACTCTACCATCCGTAATTTTGTTTACTTTTGGATAG
AGTATACCACTTGCTGGATTAGTAAACGTGTGTCCTTTTGCGTCATCAGA
AAATAAGCCTGTCAGGCTTGGGATTTGGCTTTCCTGCTGGAAATAGTGTA
TCATTACTAGCTGACATACCTTTTGGTAAATTCCTAGAAACACTGTGGCC
ACTACTTTATCATTCTTTGTgaaatagatagatagagtcaGGTAGCTCCG
TAACCTAGGACTTTTAGCAATACAgtcttttaattgttttcaggGGGTCC
CCGACACGATCACCTTTATGAACTGAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00066872-exon-scaffold_462-1491911889:440787..441021 | TCONS_00066872-exon-scaffold_462-1491911889:440787..441021 | Clytia hemisphaerica | exon |
| TCONS_00066872-exon-scaffold_462-1510915933:440787..441021 | TCONS_00066872-exon-scaffold_462-1510915933:440787..441021 | Clytia hemisphaerica | exon |
| TCONS_00066872-exon-scaffold_462-1575043694:440787..441021 | TCONS_00066872-exon-scaffold_462-1575043694:440787..441021 | Clytia hemisphaerica | exon |
| TCONS_00066872-exon-scaffold_462-1491911889:450830..450864 | TCONS_00066872-exon-scaffold_462-1491911889:450830..450864 | Clytia hemisphaerica | exon |
| TCONS_00066872-exon-scaffold_462-1510915933:450830..450864 | TCONS_00066872-exon-scaffold_462-1510915933:450830..450864 | Clytia hemisphaerica | exon |
| TCONS_00066872-exon-scaffold_462-1575043694:450830..450864 | TCONS_00066872-exon-scaffold_462-1575043694:450830..450864 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_462 | supercontig | scaffold_462:440787..450864 + |
Blast
The following BLAST results are available for this feature:
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