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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00066868 ID=TCONS_00066868|Name=TCONS_00066868|organism=Clytia hemisphaerica|type=transcript|length=1445bp
CGGCAGCAGTTTTTCTCCCCGTAAAGGAAGCATTTGCTGCAAATCATTTC
AACTTGCTTCCATTTCGAAAGCAGTGATTATTCACTACACTAACAGGAAG
ATTTTGTATGCGAGGAAGAAAATCTTGTGGTCAATTAAGGAGAAGGTTGA
AGTTGTTGTCGTTGCTTTAATCATCATATGAACACCAGATTTGTTTTAAC
AGAATTTGTAACAGATGTTTGGGATATTTTGATTTGGATGAAAAGCATTA
AAACTATAAATAGATTGTAAACATATATCAATAAAGAAATCAGAACTTTA
GTTTGATATTTTGGTAATCATCGAACTCGGGCAATCAATAAGGCTAATTA
CTGGACTACCTTTGTTGGTTGACAGAGGCTCACCATTTTCCCTCATTTTT
TGTCTTCATACTTGCCGGGTTCTCAAGGATCACACTATTCAAAATGGCGC
AATTTGGAACGCACGAGCAAGACGTGTCGAATTTTTATTCACGTATTGCT
GACATGAGTCATGATTACAATAAAGGATTTTTAACGTTTGGTCTTTGGGA
GACTAAGGATGGCGATCCGATCGACCCGCCACGATGTTATGAAGAAATTT
ATGATGAAATGTTAGCTGGAAGTCAGATTCTAAAACATCATCGTGTTTTA
GAAGTAGCATGTGGTCAAGGTTCTGGAATGTTGAAAATCCATAAGAAATA
TGGATGTGATATAACTGGGTTAGATATCAGTATTGGTAATGTAGAGATAT
CCAAAAGGAGGTTGCAGGATGCAGGATTAAGTGTTATCCATGGTAGTGCT
ACAGATATCCCACATCCTGATGCAAGCTTTGATTTCGTTCTGTGTGTGGA
AGGTATGCCTCATTTCAATACACGTGAAGATTTCTTTCGAGAAGCTTATC
GTGTATTAAAACCTGGCGGTAAGCTACTATTGGGAGATATTGTATCATTA
CATCCTATCCAAGACCTATCACTATACAAGAGACTCTTTTTGCAAGCTGC
GTTGAAAATTTGGGTGTCGCGTAAGGAAAATTGCAACTACGGTTTAGAAG
GCTACCAACAGATACTGAAGAATCTTGGATTTGGTGATACCGAGCTCGAT
AAAGTTGGTCATCGCGTGTTTCCTCAGTATACTAAATTCAATCTCACGAT
AGGAACTATACGTGAACAAGCCAAGATCCGCGGGCCGTTCGTTGGTTACT
TTGGCGGCCCGATCATCGATTGGATTGtgttgaaacttttcaacttgGAA
ATCATAGATTACATCTTGTTGTCCACAGAAAAAGAAACATgaagttaatt
ttttattttatttttcttatatattACGGTGttattaattaatttattta
tttacaaacATATAAGCATTCAATAGTTAATTTCCAATGGCTGTATCTTT
TTATTCTATTCGTTTAGTCGAGGCTAATAACGAAAAAAGTGTACC Run BLAST on NCBI protein sequence of TCONS_00066868-protein >TCONS_00066868-protein ID=TCONS_00066868-protein|Name=TCONS_00066868-protein|organism=Clytia hemisphaerica|type=polypeptide|length=282bp
MAQFGTHEQDVSNFYSRIADMSHDYNKGFLTFGLWETKDGDPIDPPRCYE
EIYDEMLAGSQILKHHRVLEVACGQGSGMLKIHKKYGCDITGLDISIGNV
EISKRRLQDAGLSVIHGSATDIPHPDASFDFVLCVEGMPHFNTREDFFRE
AYRVLKPGGKLLLGDIVSLHPIQDLSLYKRLFLQAALKIWVSRKENCNYG
LEGYQQILKNLGFGDTELDKVGHRVFPQYTKFNLTIGTIREQAKIRGPFV
GYFGGPIIDWIVLKLFNLEIIDYILLSTEKET Run BLAST on NCBI transcript from alignment at scaffold_462:299133..300639+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00066868 ID=TCONS_00066868|Name=TCONS_00066868|organism=Clytia hemisphaerica|type=transcript|length=1507bp|location=Sequence derived from alignment at scaffold_462:299133..300639+ (Clytia hemisphaerica)
CGGCAGCAGTTTTTCTCCCCGTAAAGGAAGCATTTGCTGCAAATCATTTC
AACTTGCTTCCATTTCGAAAGCAGTGATTATTCACTACACTAACAGGAAG
ATTTTGTATGCGAGGAAGAAAATCTTGTGGTCAATTAAGGAGAAGGTTGA
AGTTGTTGTCGTTGCTTTAATCATCATATGAACACCAGATTTGTTTTAAC
AGAATTTGTAACAGATGTTTGGGATATTTTGATTTGGATGAAAAGCATTA
AAACTATAAATAGATTGTAAACATATATCAATAAAGAAATCAGAACTTTA
GTTTGATATTTTGGTAATCATCGAACTCGGGCAATCAATAAGGCTAATTA
CTGGACTACCTTTGTTGGTTGACAGAGGCTCACCATTTTCCCTCATTTTT
TGTCTTCATACTTGCCGGGTTCTCAAGGATCACACTATTCAAAATGGCGC
AATTTGGAACGCACGAGCAAGACGTGTCGAATTTTTATTCACGTATTGCT
GACATGAGTCATGATTACAATAAAGGATTTTTAACGTTTGGTCTTTGGGA
GACTAAGGATGGCGATCCGATCGACCCGCCACGATGTTATGAAGAAATTT
ATGATGAAATGTTAGCTGGAAGTCAGATTCTAAAACATCATCGTGTTTTA
GAAGTAGCATGTGGTCAAGGTTCTGGAATGTTGAAAATCCATAAGAAATA
TGGATGTGATATAACTGGGTTAGATATCAGTATTGGTAATGTAGAGATAT
CCAAAAGGAGGTTGCAGGATGCAGGATTAAGTGTTATCCATGGTAGTGCT
ACAGATATCCCACATCCTGATGCAAGCTTTGATTTCGTTCTGTGTGTGGA
AGGTATGCCTCATTTCAATACACGTGAAGATTTCTTTCGAGAGGCTTATC
GTGTNGTGTGGAAGGTATGCCTCATTTCAATACACGTGAAGATTTCTTTC
GAGAAGCTTATCGTGTATTAAAACCTGGCGGTAAGCTACTATTGGGAGAT
ATTGTATCATTACATCCTATCCAAGACCTATCACTATACAAGAGACTCTT
TTTGCAAGCTGCGTTGAAAATTTGGGTGTCGCGTAAGGAAAATTGCAACT
ACGGTTTAGAAGGCTACCAACAGATACTGAAGAATCTTGGATTTGGTGAT
ACCGAGCTCGATAAAGTTGGTCATCGCGTGTTTCCTCAGTATACTAAATT
CAATCTCACGATAGGAACTATACGTGAACAAGCCAAGATCCGCGGGCCGT
TCGTTGGTTACTTTGGCGGCCCGATCATCGATTGGATTGtgttgaaactt
ttcaacttgGAAATCATAGATTACATCTTGTTGTCCACAGAAAAAGAAAC
ATgaagttaattttttattttatttttcttatatattACGGTGttattaa
ttaatttatttatttacaaacATATAAGCATTCAATAGTTAATTTCCAAT
GGCTGTATCTTTTTATTCTATTCGTTTAGTCGAGGCTAATAACGAAAAAA
GTGTACC Coding sequence (CDS) from alignment at scaffold_462:299133..300639+ >TCONS_00066868 ID=TCONS_00066868|Name=TCONS_00066868|organism=Clytia hemisphaerica|type=CDS|length=1698bp|location=Sequence derived from alignment at scaffold_462:299133..300639+ (Clytia hemisphaerica)
ATGGCGCAATTTGGAACGCACGAGCAAGACGTGTCGAATTTTTATTCACG
TATTGCTGACATGAGTCATGATTACAATAAAGGATTTTTAACGTTTGGTC
TTTGGGAGACTAAGGATGGCGATCCGATCGACCCGCCACGATGTTATGAA
GAAATTTATGATGAAATGTTAGCTGGAAGTCAGATTCTAAAACATCATCG
TGTTTTAGAAGTAGCATGTGGTCAAGGTTCTGGAATGTTGAAAATCCATA
AGAAATATGGATGTGATATAACTGGGTTAGATATCAGTATTGGTAATGTA
GAGATATCCAAAAGGAGGTTGCAGGATGCAGGATTAAGTGTTATCCATGG
TAGTGCTACAGATATCCCACATCCTGATGCAAGCTTTGATTTCGTTCTGT
GTGTGGAAGGTATGCCTCATTTCAATACACGTGAAGATTTCTTTCGAGAA
GCTTATCGTGTATTAAAACCTGGCGGTAAGCTACTATTGGGAGATATTGT
ATCATTACATCCTATCCAAGACCTATCACTATACAAGAGACTCTTTTTGC
AAGCTGCGTTGAAAATTTGGGTGTCGCGTAAGGAAAATTGCAACTACGGT
TTAGAAGGCTACCAACAGATACTGAAGAATCTTGGATTTGGTGATACCGA
GCTCGATAAAGTTGGTCATCGCGTGTTTCCTCAGTATACTAAATTCAATC
TCACGATAGGAACTATACGTGAACAAGCCAAGATCCGCGGGCCGTTCGTT
GGTTACTTTGGCGGCCCGATCATCGATTGGATTGtgttgaaacttttcaa
cttgGAAATCATAGATTACATCTTGTTGTCCACAGAAAAAGAAACATgaA
TGGCGCAATTTGGAACGCACGAGCAAGACGTGTCGAATTTTTATTCACGT
ATTGCTGACATGAGTCATGATTACAATAAAGGATTTTTAACGTTTGGTCT
TTGGGAGACTAAGGATGGCGATCCGATCGACCCGCCACGATGTTATGAAG
AAATTTATGATGAAATGTTAGCTGGAAGTCAGATTCTAAAACATCATCGT
GTTTTAGAAGTAGCATGTGGTCAAGGTTCTGGAATGTTGAAAATCCATAA
GAAATATGGATGTGATATAACTGGGTTAGATATCAGTATTGGTAATGTAG
AGATATCCAAAAGGAGGTTGCAGGATGCAGGATTAAGTGTTATCCATGGT
AGTGCTACAGATATCCCACATCCTGATGCAAGCTTTGATTTCGTTCTGTG
TGTGGAAGGTATGCCTCATTTCAATACACGTGAAGATTTCTTTCGAGAAG
CTTATCGTGTATTAAAACCTGGCGGTAAGCTACTATTGGGAGATATTGTA
TCATTACATCCTATCCAAGACCTATCACTATACAAGAGACTCTTTTTGCA
AGCTGCGTTGAAAATTTGGGTGTCGCGTAAGGAAAATTGCAACTACGGTT
TAGAAGGCTACCAACAGATACTGAAGAATCTTGGATTTGGTGATACCGAG
CTCGATAAAGTTGGTCATCGCGTGTTTCCTCAGTATACTAAATTCAATCT
CACGATAGGAACTATACGTGAACAAGCCAAGATCCGCGGGCCGTTCGTTG
GTTACTTTGGCGGCCCGATCATCGATTGGATTGtgttgaaacttttcaac
ttgGAAATCATAGATTACATCTTGTTGTCCACAGAAAAAGAAACATga
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00066868-exon-scaffold_462-1491911889:299133..299984 | TCONS_00066868-exon-scaffold_462-1491911889:299133..299984 | Clytia hemisphaerica | exon |
| TCONS_00066868-exon-scaffold_462-1510915933:299133..299984 | TCONS_00066868-exon-scaffold_462-1510915933:299133..299984 | Clytia hemisphaerica | exon |
| TCONS_00066868-exon-scaffold_462-1575043694:299133..299984 | TCONS_00066868-exon-scaffold_462-1575043694:299133..299984 | Clytia hemisphaerica | exon |
| TCONS_00066868-exon-scaffold_462-1491911889:300047..300639 | TCONS_00066868-exon-scaffold_462-1491911889:300047..300639 | Clytia hemisphaerica | exon |
| TCONS_00066868-exon-scaffold_462-1510915933:300047..300639 | TCONS_00066868-exon-scaffold_462-1510915933:300047..300639 | Clytia hemisphaerica | exon |
| TCONS_00066868-exon-scaffold_462-1575043694:300047..300639 | TCONS_00066868-exon-scaffold_462-1575043694:300047..300639 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_462 | supercontig | scaffold_462:299133..300639 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR013216 | Methyltransf_11 |
| IPR029063 | SAM-dependent_MTases |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0008152 | metabolic process |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0008168 | methyltransferase activity |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0008152 |
metabolic process |
| molecular_function |
GO:0008168 |
methyltransferase activity |
Blast
The following BLAST results are available for this feature:
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