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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00066859 ID=TCONS_00066859|Name=TCONS_00066859|organism=Clytia hemisphaerica|type=transcript|length=1111bp
CGACGATGGAGTTTATTTAACGACTTATTTGATTGATTGGTCTATGCGAT
AACAAATCATTGACAATATTTATCCTTGTCTATTGTTAGACATAAcatca
ataataaaaaaaacgattttttaatGGGAGTGATCGAGCTTGTGTAAAAG
ATACACGAATTAATTCGCTGTCTTATATTATACGTTTATGTTGTTTTAGA
AGTGTGTTTTGTGTGATTGAATTTTGGAATTCTTTTGCTTTGATCAGAAG
GGTTGTGACATTTGAGGGCGACGCACAGAAGttacattttgattttcttg
gacTTTCtatttcaccaattttcatACACAATGAGTTACGAAGACATGGA
AGAATACCGTGATACCTTCTCACTTTTCGACAAACAAGGAGATGGAAAAA
TTGAATGTGGCGATATTGGAGATATCTTACGCGCTCTCGGATGCAACCCA
ACTCAAGCCGAAGTCAAAAAAATCGTCGCCGACATCGACTCCTCAGGACA
AAAGCGAATCACCTTTGAAGAATTTATTCCAATCTTTCACACGATGAGCA
AAAAGAAAAGCTCGTGTGGTTTCGAAGCCTTCTCCGAAGGATTCAGGATT
TTTGACAGAGACAACAACGGTATGGTCAGTGTGGCCGAAGTCAGACATTT
ATTGACCAGTTTAGgtgaaaaattaaattccagTGATGTCGATGCTTTAG
TACAAGGACTTGAAGATTCAAGTGGCATGATCAACTACGAAGAATTTGTT
CGTGGAGTAATGAACGCTTAAACACactacaaacaaacaaacatcaGAAC
TGCgtccaaaaacaaaaacaacacaaCATCACGCAATCACCATAACAACT
GATGATACGtcatcaatttcaaaatttagggTTCTTTTTGCGAAAAAAGC
AAGAAAGTTGGGATgagttttaaatttcaaatttaataattctatattat
tttttaaaacgaaatcttacaatatttttgtttgaaatttttgtaccATA
TTAAACTTGGGGaggaactttctatttttgtaaaataatatttttcttaa
ttatactatattatattttccaaagaaaaacaaaaacatttagtACTCTT
GTCGTTctata Run BLAST on NCBI transcript from alignment at scaffold_462:62547..69846+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00066859 ID=TCONS_00066859|Name=TCONS_00066859|organism=Clytia hemisphaerica|type=transcript|length=7300bp|location=Sequence derived from alignment at scaffold_462:62547..69846+ (Clytia hemisphaerica)
CGACGATGGAGTTTATTTAACGACTTATTTGATTGATTGGTCTATGCGAT
AACAAATCATTGACAATATTTATCCTTGTCTATTGTTAGACATAAcatca
ataataaaaaaaacgattttttaatGGGAGTGATCGAGCTTGTGTAAAAG
ATACACGAATTAATTCGCTGTCTTATATTATACGTTTATGTTGTTTTAGA
AGTGTGTTTTGTGTGATTGAATTTTGGAATTCTTTTGCTTTGATCAGAAG
GGTTGTGACATTTGAGGGCGACGCACAGAAGttacattttgattttcttg
gacTTTCtatttcaccaattttcatACACAATGAGTTACGAAGACATGGA
AGgtcagccattttgaattttcatttttttctaaagtttatgATATTATG
AGATAACTCTGCGTGATGATTTTATTAACTCACAGCAGTTTAATAATATT
ATTATTCCTGTTTAGAGTTTATGCTTTCCACTCGTGAGAAATTGTTAGAT
TTTTATTATGTTACCGAAGATAGTCTTTGGTTAAAGGGTGGGATTGCTTT
GTCCTTAATTTCCTTTCCTAAATAGACCAATCAATAATGTTTGTACAATC
ATTTGAAGGTGTTGATCATTTACCTaaatcatttgatttgaaaacctTGA
CTCGAccctcttctctttatgtcgaCAAGTTGGATTAGATCATCGTGGCA
TTTTATCATTTGAGAGACTTATAGTTTATTAGCAGACAATTAGAATTAAA
ATGGTAATTTTTATCTATAAAATGCTTTCTGATGTTGGATAATAAGAGCT
GCTTTGTCTGTTCTATGACTTCTATCGTTGTGTTAAAATAGATCTTATTT
TGTGAGCGATTTAAATCTTTTAGTGAGAAGTCTTGTTCCGCCTTTTCTCG
ACATATCTCTGATTTTTCTCCTCACTAGAACATGGATTTTATTTCAACCC
TCACTTTTTCTGATTCTCACTCAAGTCCGTAAGGCATTTTTTTGTTATCT
TTCGGTTGTAGTCTAGCAATGTTAACGATGTGACAACTACAAGAGAAAGA
AATTTGATCTTTGTGTCAAAAACTTCTTACACGCTTTTCACGGTTTTCCT
CCATTTTTTAACGCAGTTCAACATTTGATAGATTGGAAATAATggtcaaa
agaaattttaaaacatcGCTGTCTCACCACCCATGTCTAAATcatttttg
agacaggggtgaagtTAAGCAAGATTTCTAAGTATTGACTAAATGACATT
GTGCAAAAGTTTAGCTATCCTTATTTCTGGTGCCAAACTTTCTAGGCAAT
CCATATAAAAACTGcagtatattatttttttgcattttcaaacAAACTAT
AGTTTATTAATTTGCCATAATTGAGGTTTACTTGACACAGGGGTGACTCG
TGGAGTTGAATTTCATGACCAACAAAGGAACTTTCATTGAAATAATACAc
gttttaataagaacaaactatataagaacataaggcttcgatggccaaaa
tgttaagaaccatgtttgaaacacttttttttttaagaaaaatgggcaaa
tatacttacaaaatggttaaaataagaTCATGTTAGGaacttttttaggc
ttaaaacccaaggcttcaaaaattttggatgttcttataaaaaagaacgt
GTACATTTTTATCGAAGTTTCTTTGACCAATCTAGCAGATATTGAACTGT
ATTAAAAATGTTGGAGAACCTTTAAAATATTCTTCCTTTTCCCTTTTGAA
ATCTTCAGGCAGAAGAAAGCGAAGATCAAATGTGGGGTAAGATTTCTTGT
AAATATTTGTGAAGTATGATTGGTCTAATGTAGGGAAGGAAATTGGGATA
AATAGGATGGCAATTTTAAGCCCTGTTTTTAATAGTAGTTACAGTAATGG
ATTATCTTTCCAAAGTCGAATAACTTATTTTATCAGTGGTAAAATAACAC
CCCCTAATTTTAATCATAATAATATTTATTACttacaatttttataaatt
aaaaCATGTTCATGGCCCTTGTAGATTTATACTTGTTCAATTTTTTGTAC
ACCGTCGAAATATTTATCTGCTTAAAGAATCTATGAAATGGTTTTATTGG
TTAACACGTTGGTAACTTTTTATGTAAGCCCtttgaataataaaatttac
gtgctttttttgtgaattatTTTGTTACGTGTATGTTATCTCACAAACCA
TTTTAATTTAACACTAAATCGATTTATGCAAAAATTATAGTAATTTTATT
GCaccaattcaaaaaattcatgatagcTTGACCTCACTTAAAATCAACGA
GCCATTAGTCGGTCACTcctctttttgaaaaacaacctttccattgCAAA
GATTCGCAGAACTTTTAAATCCTTTGAATGTTTAACGAAGATAATTTTCA
TCGAGTGTCCTAAACACATGGTCTGCTAAATACATTTTGAAtgcgcaaaa
aaaaacttttttatcatCAAAGTATTTTATGCAAGCCTCCTAACATTCAA
AACATTGTCACTCCCCTTTCTTAattttacaaatattatttCCGCCATCT
TTAATATCTCGTCATTAGGAAATCATTAACAGATCCTTTAATTTCCATAA
TTAACAAGAGAAGAGCATAACATTTTTCATGAATGATAATAATGACCAGA
AAGCTCGGAAAGCTTACCTCCTTAATGTAGTATATGAAAAAACTTCCGCT
gctttttgaaatgaaaaagctTTTTCATTCCTCACCCTAGCATGAGAACT
TGAGCCTactccattgagtttaaagggTTAAAAGGATTCTTCAAGGATTC
TTTGGTAACCCAGTGATAGGTTTtatttcaatctggcgtttgtgtgaaag
AGCTTTCTCACCTGGGACGGGTTTCGACCAATATTTCTCCAGATGAAATC
TCAACGGGTCTCTTTTACAGGGGTGTTAAAGgtgagtgatatcgtttgct
tactcatcaattttaattcacaagctttttcacattggattgacacagat
attgagcaagattggtcagaaagaagaaaagaaaaacatattttgcttat
atcagcataatataacaatagcaagacactgtccagatatgaaatatgtg
tctggtatgaaacgggaacacttatgtaaaaataaaacctttaaataact
GAATACAAAGACATCGAAAAACCTATCAaaccattttgtttttatttcca
tTTTAGAATACCGTGATACCTTCTCACTTTTCGACAAACAAGGAGATGGA
AAAATTGAATGTGGCGATATTGGAGATATCTTACGCGCTCTCGGATGCAA
CCCAACTCAAGCCGAAGTCAAAAAAATCGTCGCCGACATCGACTCCTCAG
GTATCTTGAATTCGACATTTTAGCGGTAATTTTTAAGTATAGACCTATAA
CCTTATCTTCATAATTTGGGATTGTATTTAAGTTTAACAGGACCagatga
tacacgtttttttataagaatatacatTATAAGAATATCACAATCATGGA
ATTCGGCAacagaacctaagaatgccatttttagagcatttgtcaattat
ccccaagtaactttcacaaaaaatgccatttgtATTGTGTGTGCGTTAAT
ATTTGTGGTCAGTATTTTAACGTCATTACCCTCAGATTCAAAATCATAAT
TTAAGTTatttaataaattttgattttatgaaaataaaatgaagtcaCTT
CTGTGTTTACAATTTTTGCAGAAATCATTCAGGGAGGATCAACGATAATT
TAAGTTAAAAACTATTATTTGGTGTGTATTGCATGTTGTATTGCATGAGT
CAACCAAAACGTTCTTGCATTTGTGCTATTTGGATCAAGAATGACTTGTG
ATGCGAATGCTGCTAAGAAATAATCCAAGCAATTGTAAAGCCAAATCttt
taatcaataaaaagattaaaataCCATAGGGATTGATTGGAGGTCAAATA
TTTGATGGCTACCCCGGTAAATAGAATGCGTAGTTACACAGTTTTTGTTT
AGTCGTAGCCTAAAGGGAACAACTATAACGATAGTGACTTAACTATGGAC
AAAACCTTACGACCTTACACATTATagtgacacccctgtctcgttgACAT
TGTGAGAATCGTTTAGTTACTGGGGATGAATAAGCTAAATTCCAAACGAG
TAGAATCTCTCACATTTGATTCAAATACCAACTGTTTACCTTCACTCGTG
ATAGCTTAAAATCCAAGTGGGATGCAATAcccttgaatttttttcctaaT
AAGAATTCAATCAAATCAACACTCAGGGCTCACTTACAATGAGTTTAGGC
AGGGTGGTCAAAATATCACATATCGATGATCTATCGTTTTCCTCATAGGA
CAAAAGCGAATCACCTTTGAAGAATTTATTCCAATCTTTCACACGATGAG
CAAAAAGAAAAGCTCGTGTGGTTTCGAAGCCTTCTCCGAAGGATTCAGGA
TTTTTGACAGAGACAACAACGGTATGGTCAGTGTGGCCGAAGTCAGACAT
TTATTGACCAGTTTAGGTAAGTCGTCTCCTGCCCAGGCTCCTAAAATACC
TTATTTGCTTTTCATAATAACTCACATTAGTTATAaacacttttttgcaa
agtaaagATTTTattgcgcctccttagactctatattcGTTGTCCCCCCA
ATTTCATGGCGTGACCCTGTATTAGTTATAAATACACTTACAGATCAAGT
TCTAGGGTGTTGTGGCTGCTTCAGATGCTGTTTTAAATCAATAGCTGCTG
CCTAAGTTTGGAAAATTCAAATTCTGATGGTTTTCCTGTTTAAAAAGTGA
ATATGATTCTATCTGCAAATTATAGACAAAGTAATTACTTTTGGAGTATC
TACACTTCATTAATTGTatcttttgattattttttcaggtgaaaaattaa
attccagTGATGTCGATGCTTTAGTACAAGGACTTGAAGATTCAAGTGGC
ATGATCAACTACGAAGGTTTGTACCCATACTCACAATTCAAAATTCATGC
ATGTTTCTTGGGGGAAAGTCATGATGCTTGCTATATGAATCTATACTGAT
ATCTTCCTCTTTAAGGCCTTAGGGATGGAcgtaaaatctttatttttgaa
aggtATTAAAAGGACAAATACTTTCCATAGAGAGTATTTTTAGGTATCCC
TACAAAGGTCATGTCACgctcttgaaaaaatttccgcCAAAACTTGGTTG
AGTTCTCAACGCAAGAAATTCTACTATGAAGTTTGATAAGGTTATCCCTT
TAAAATGGCTTAAGATGGGGATCAAAATTAATTTGCTTTATTCACAGATA
GTCTAAACATTACTATTCAAAAGAAAGATCTTATATCAAAATATTGATTC
TAATAACAGATTTGACTATGCTAACTATGACAGtggtcaaaacttttgaa
atcacaCAGTCAAAAAGCTCTTAGTCAACAGAGAGGCGTTCAAGTTAAAT
TTTGTTAGGACCAATCTTTCGCCGGTGGAAAAATCGACATTTAATTCAAT
GAATTCGTAGCTAATTTAAATACACATCAAATACCACCTACCATATAAAG
CCAAGGAGATCCCAGCCAAATTGGAAAGTTCGTCCCCAATGATCAGATAC
TCTATTATTTTATTACCCGGTGGATAAGTGGTTTCAACCCCATTGTGAAG
GGGGCGGTAAAGTTATAAAGTTGAATCCCGCCCGTCTTCAATTACTCCAA
TAGAAACTTAAAACCCCTTCAAACAAATTGGGATTTCTAATTATACTGAT
ATGTGGCTCATGGGCTTGAAAAACTCTCGCCAGGACACCGAGACAGGATT
GTAGAGAAagaaagttagatttttttctctcaatatTTCAAGtctgaaaa
ttagatttttcaagaGACGGCAATTAGATGTGACTTAGTTGATAATAGGG
TCTGCATTTTTCTCTTTCAGAATTTGTTCGTGGAGTAATGAACGCTTAAA
CACactacaaacaaacaaacatcaGAACTGCgtccaaaaacaaaaacaac
acaaCATCACGCAATCACCATAACAACTGATGATACGtcatcaatttcaa
aatttagggTTCTTTTTGCGAAAAAAGCAAGAAAGTTGGGATgagtttta
aatttcaaatttaataattctatattattttttaaaacgaaatcttacaa
tatttttgtttgaaatttttgtaccATATTAAACTTGGGGaggaactttc
tatttttgtaaaataatatttttcttaattatactatattatattttcca
aagaaaaacaaaaacatttagtACTNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNATAAAGCCAAGGAGATCCCAGCCAAATTGGAAAGTTCGTCCCCAA
TGATCAGATACTCTATTATTTTATTACCCGGTGGATAAGTGGTTTCAACC
CCATTGTGAAGGGGGCGGTAAAGTTATAAAGTTGAATCCCGCCCGTCTTC
AATTACTCCAATAGAAACTTAAAACCCCTTCAAACAAATTGGGATTTCTA
ATTATACTGATATGTGGCTCATGGGCTTGAAAAACTCTCGCCAGGACACC
GAGACAGGATTGTAGAGAAagaaagttagatttttttctctcaatatTTC
AAGtctgaaaattagatttttcaagaGACGGCAATTAGATGTGACTTAGT
TGATAATAGGGTCTGCATTTTTCTCTTTCAGAATTTGTTCGTGGAGTAAT
GAACGCTTAAACACactacaaacaaacaaacatcaGAACTGCgtccaaaa
acaaaaacaacacaaCATCACGCAATCACCATAACAACTGATGATACGtc
atcaatttcaaaatttagggTTCTTTTTGCGAAAAAAGCAAGAAAGTTGG
GATgagttttaaatttcaaatttaataattctatattattttttaaaacg
aaatcttacaatatttttgtttgaaatttttgtaccATATTAAACTTGGG
Gaggaactttctatttttgtaaaataatatttttcttaattatactatat
tatattttccaaagaaaaacaaaaacatttagtACTCTTGTCGTTctata
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00066859-exon-scaffold_462-1491911889:62547..62898 | TCONS_00066859-exon-scaffold_462-1491911889:62547..62898 | Clytia hemisphaerica | exon |
| TCONS_00066859-exon-scaffold_462-1510915933:62547..62898 | TCONS_00066859-exon-scaffold_462-1510915933:62547..62898 | Clytia hemisphaerica | exon |
| TCONS_00066859-exon-scaffold_462-1575043694:62547..62898 | TCONS_00066859-exon-scaffold_462-1575043694:62547..62898 | Clytia hemisphaerica | exon |
| TCONS_00066859-exon-scaffold_462-1491911889:65753..65896 | TCONS_00066859-exon-scaffold_462-1491911889:65753..65896 | Clytia hemisphaerica | exon |
| TCONS_00066859-exon-scaffold_462-1510915933:65753..65896 | TCONS_00066859-exon-scaffold_462-1510915933:65753..65896 | Clytia hemisphaerica | exon |
| TCONS_00066859-exon-scaffold_462-1575043694:65753..65896 | TCONS_00066859-exon-scaffold_462-1575043694:65753..65896 | Clytia hemisphaerica | exon |
| TCONS_00066859-exon-scaffold_462-1491911889:66895..67062 | TCONS_00066859-exon-scaffold_462-1491911889:66895..67062 | Clytia hemisphaerica | exon |
| TCONS_00066859-exon-scaffold_462-1510915933:66895..67062 | TCONS_00066859-exon-scaffold_462-1510915933:66895..67062 | Clytia hemisphaerica | exon |
| TCONS_00066859-exon-scaffold_462-1575043694:66895..67062 | TCONS_00066859-exon-scaffold_462-1575043694:66895..67062 | Clytia hemisphaerica | exon |
| TCONS_00066859-exon-scaffold_462-1491911889:67435..67512 | TCONS_00066859-exon-scaffold_462-1491911889:67435..67512 | Clytia hemisphaerica | exon |
| TCONS_00066859-exon-scaffold_462-1510915933:67435..67512 | TCONS_00066859-exon-scaffold_462-1510915933:67435..67512 | Clytia hemisphaerica | exon |
| TCONS_00066859-exon-scaffold_462-1575043694:67435..67512 | TCONS_00066859-exon-scaffold_462-1575043694:67435..67512 | Clytia hemisphaerica | exon |
| TCONS_00066859-exon-scaffold_462-1491911889:68467..68516 | TCONS_00066859-exon-scaffold_462-1491911889:68467..68516 | Clytia hemisphaerica | exon |
| TCONS_00066859-exon-scaffold_462-1510915933:68467..68516 | TCONS_00066859-exon-scaffold_462-1510915933:68467..68516 | Clytia hemisphaerica | exon |
| TCONS_00066859-exon-scaffold_462-1575043694:68467..68516 | TCONS_00066859-exon-scaffold_462-1575043694:68467..68516 | Clytia hemisphaerica | exon |
| TCONS_00066859-exon-scaffold_462-1491911889:69528..69846 | TCONS_00066859-exon-scaffold_462-1491911889:69528..69846 | Clytia hemisphaerica | exon |
| TCONS_00066859-exon-scaffold_462-1510915933:69528..69846 | TCONS_00066859-exon-scaffold_462-1510915933:69528..69846 | Clytia hemisphaerica | exon |
| TCONS_00066859-exon-scaffold_462-1575043694:69528..69846 | TCONS_00066859-exon-scaffold_462-1575043694:69528..69846 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_462 | supercontig | scaffold_462:62547..69846 + |
Blast
BLAST of TCONS_00066859 vs. Swiss-Prot (Human)
Match: MYL1 (Myosin light chain 1/3, skeletal muscle isoform OS=Homo sapiens GN=MYL1 PE=2 SV=3) HSP 1 Score: 146.362 bits (368), Expect = 2.751e-41 Identity = 67/146 (45.89%), Postives = 99/146 (67.81%), Query Frame = 1
Query: 334 SYEDMEEYRDTFSLFDKQGDGKIECGDIGDILRALGCNPTQAEVKKIVADIDSS--GQKRITFEEFIPIFHTMSKKKSSCGFEAFSEGFRIFDRDNNGMVSVAEVRHLLTSLGEKLNSSDVDALVQGLEDSSGMINYEEFVRGVMN 765
S E +E+++ F LFD+ GD KI +GD+LRALG NPT AEV+K++ + + K+I FE+F+P+ +S K +E F EG R+FD++ NG V AE+RH+L +LGEK+ +V+AL+ G EDS+G INYE FV+ +M+
Sbjct: 48 SKEQQDEFKEAFLLFDRTGDSKITLSQVGDVLRALGTNPTNAEVRKVLGNPSNEELNAKKIEFEQFLPMMQAISNNKDQATYEDFVEGLRVFDKEGNGTVMGAELRHVLATLGEKMKEEEVEALMAGQEDSNGCINYEAFVKHIMS 193
The following BLAST results are available for this feature:
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