TCONS_00066858 (transcript) - C. hemisphaerica

Overview
NameTCONS_00066858
Unique NameTCONS_00066858
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2546

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00066858 ID=TCONS_00066858|Name=TCONS_00066858|organism=Clytia hemisphaerica|type=transcript|length=2546bp
GAAttaatccaattgaaaaaatatcaacattttactattactagatttaa
aaccataaaaccaaacctacattctgggggctataacgaaaatgggagtc
aacttcaagaaccaaaaaaattggtttatctatcaaaagtaatgaaacta
acccctgggaaaggattttgggagttcaaaatttcgttgaaaatattcaa
tatcTTTTAAAATGGAAATCTACATCTTttaggtctgattcaaattttac
ctacattctcggggtcaggtgctgtaattcaattgtcaaaaaaattgatt
tttgcaaccggaactttgtATTTCTTTTATCCCTACTCCTCTTCCCTCTC
ATCAACAATCagtgatgaaatttaatgcgcTATGCATTTTCTCATTCTTC
TTATTGCTATCTAGCTTGTTATTTACTTTTCTTTATTCGCAGATTTTGCC
TGTGGGTGGCATAAAAGAAGAGTTAATTGCTCGTGTTCGACGACAAGCAG
ACAACACTGACAACAACTCCACCACAACACCCACACCGACAACCGATGGC
GGAGATGGAGGTACCGGTGGTATCAATGTCGTTCCTGTATCCAAACCTAG
AGAAGGAATCACCTTGAGTTGTCCAGATAAGACGGCAATCTGTCAGACCA
TCCGTTGTGAGATCACAAACTTACCAAGCAAAATATCCGAACAAATTGTG
TTCAGATCAAGATTGTGGGAACCTTCTCTTCTTTTGGATTATTATGGTGA
AGTGTTGACCATTGTGTCCAATGGAAAAGTAGAACTCGGACAAAATATTT
CATACATTACTGATCCTGATCCAAACAATAATTATAATGATGTATACACG
ATTATCAATCCAGTATTAGTGAAAGCCAAGAGCAAGATTGCTGTATGGAT
CATCGCTCTAGCTGTTGTCGCTGGTATCATCTTACTGGCTCTCCTAGTCT
TCGGCTTGTTCAAGCTTGGTTTCTTCAAACGTAATCGAAAGCCAGAGTAT
TACggacaaaagaaagaacaagagAAATCGCTCCTCAAGAAATAAAGTAA
TGAAGAAATTTATTCGGTTTGTTGTTGGTAAGAAATTCGTATTTTTGAAA
TGCATTTTACATTTTGTATTGAGATGAAGGATTTCGACGAAAGATTCATT
GTTGTGATGTGTGATAGTTTCATCATGTATATATGGTAATAAAGAGTTAT
ATGGTTTTGTATGAACTGTTCACCAACCGGCTACCGTAATTTTTGATTGT
GGAAAGCACgctcaataatttttttttacaaatgcaACACTTGGCAGCCT
TAACTCTAGCCTTTACTACCCACGATGAAAGTAATTGGACTCTGGCTTTC
CTATTTTTTTGGTTTAtggattgattgattgattgattgattgattgatt
gattgattgattgattgattgattgattgattgattgattgattgatcac
CAAATTACAATGCAGTGAAGAGttatttatttgaataaaatttgtaCCAT
ACTATTTTTCAAAGCTatttttagaaaccatttttgttatttttctcatt
ttttatttgtaaactcatttttttttaattcccttgtttttatagattag
tttttcttttcacttttagCTTTATTTTTGTCCTACTGTTACCGGAACAC
CCGGAAATTTACACGTCCTTAGGACTCTCTTAGACTTCAAATTTAGATAT
TATTCTAATTTTTGCTCCCTAATTTTCATAATATCATATGAAACGCCTAT
TTTATTGAAGTACCTATATTCTCCGcttgtttttagattttatagTAAGA
ATCTTCTCCCACTGAAACGTCTACAGCCGATTTAGAATAAATTTAGAATA
AATGTAGCGATAAATAATTCTAGCACCAATTCACGAAAAAaggggaatgg
aaaatttttccGTTGCTTTCTAAATATGACGTTTGTATGCCAAAATGTAG
GAAGGAACTGATAGGGAAGTTGTTTTATAGGAAAGGAATAATTTCCAACG
AAATGATTTATAGGATGACACGAATCTTGAATATCATCGAATTGACGCTC
CTTTTCCAAAACGTAAATAAAGAGAGAAAACTCTGTCATGTTTGTTGACA
AGACCTTATAAGGAGAATCAGAATGAAAAATTTGTAACTCTTATTTACAC
CACCCCCTTAGCATCCGAACCTCTTCAAAAGGGAATGGTCACTCTTCAAC
ACAGTGTGTTTTACGACAATTACGACATCTTGTTTTTGTCGTTTACCAAA
ATTACTGACCGCAAGTCTCCttcatattacaattttagagaaacattttt
ttttaagaatttgtttttattttgaaatttagaacaaaaaagcattttaa
attcattttatcTCAACCCATAGCTTATTTATGAATTTTATctatctttt
tttatatttatgttaccttttgtttttgctttataaatgtttattttaaa
attttcaaaaaaattttcattccctttttatctttcttttctttgaaaaa
tatatatttcatttgctttaaaaataaattgtttgcttatttaaaa
Run BLAST on NCBI

transcript from alignment at scaffold_462:57301..62313+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00066858 ID=TCONS_00066858|Name=TCONS_00066858|organism=Clytia hemisphaerica|type=transcript|length=5013bp|location=Sequence derived from alignment at scaffold_462:57301..62313+ (Clytia hemisphaerica)
GAAttaatccaattgaaaaaatatcaacattttactattactagatttaa
aaccataaaaccaaacctacattctgggggctataacgaaaatgggagtc
aacttcaagaaccaaaaaaattggtttatctatcaaaagtaatgaaacta
acccctgggaaaggattttgggagttcaaaatttcgttgaaaatattcaa
tatcTTTTAAAATGGAAATCTACATCTTttaggtctgattcaaattttac
ctacattctcggggtcaggtgctgtaattcaattgtcaaaaaaattgatt
tttgcaaccggaactttgtATTTCTTTTATCCCTACTCCTCTTCCCTCTC
ATCAACAATCagtgatgaaatttaatgcgcTATGCATTTTCTCATTCTTC
TTATTGCTATCTAGCTTGTTATTTACTTTTCTTTATTCGCAGATTTTGCC
TGTGGGTGGCATAAAAGAAGAGTTAATTGCTGTAAGTGctatttttttta
cttattggacctaccccggtggggttgaggtcctataaattaacccatgt
tcgttagttagttagttaccagtttttctcgagattggcacATTAGTtta
ttctgatttttggcacaaaggtgcatgaccataaaccctcgaatgtgacg
gagcccgaatttcgaaaaaaaaaatttgggggcaaatttgggccaaaaaa
cggcttaaagacgggttttctggactttgtgaaaaattggatcattaatt
ttttctgatttttagcatgaaagtagggtacaatcatagttaaaagatgg
ctcaagcagatttttgcagaaacatttattatttttttggctgaaaaacg
aatctttatctataagaatcactaattATAAgaatagatcaatgttctta
gccaaattattattaaaatgtcaccttagagcgcgatggtttgagttttc
tgtaaacacttattatttttttggctgaaaaacgaatctttatctataag
aatcactatttatgNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNGTAGAGCGcgacggtttgagttttctggaaaccttatttattaa
gctgtgcatttttctgatagtggtttttataaagaaaagcgcttaatagc
tttttatttctttttcaaaaatctttttcaatagtgttaatagtttctct
caatagataNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNa
tttttttgtattttgaccagttatgtcttatgtgtttcattgtttcaatg
ttcactgattagtttgataaccaggtaggtccataaaagtatcgcttgtt
caTTTTTACCCCTCCTCCATTACAGCGTGTTCGACGACAAGCAGACAACA
CTGACAACAACTCCACCACAACACCCACACCGACAACCGATGGCGGAGAT
GGAGGTACCGGTGGTATCAATGTCGTTCCTGTATCCAAACCTAGAGAAGG
AATCACCTTGGTAAGCAAGttcctgtctgtctgtctgtctgtctattTAA
CCCCTAGGGAAATCATTTAGTATTGCCTTGAGttcacaaaattcttttgt
tgagGGAGACAATCAGAGACAATCAAATTTGagctaaaaatttattttta
gaaaattcgaTGCTCTCCACTGGTGTCATTTCACACCAGACACTTTATCA
AAATGAGACTCGATGTCGGATTTCTTCTTGCCACAAATACATATTAAAAC
GTTCTCTAACACTGAATCATATCTAATCCTTTTGTAGAGTTGTCCAGATA
AGACGGCAATCTGTCAGACCATCCGTTGTGAGATCACAAACTTACCAAGC
AAAATATCCGAACAAATTGTGTTCAGATCAAGATTGTGGGAACCTTCTCT
TCTTTTGGTAAGTGCAACCTCGTTTTGGAAAAGAGCCTTCTTTAGAGCCT
TCTTTTTTAAAAGGACAGTGTGATAAAACAAGATACGGTTTTTTTGGGCA
TGCTGTTTTGGCATTCAAAATTAGTAGTTTTTACCTCATGGATGAcaata
ttcaatatttcatGTGATTTAACAAACCTTGTGTCATATTTTTCAAGGGA
AACCTTTTCCAGAGATCCAGTGAAAACAGATAAACGACTCTTCAAACAGA
TTGGAACCACGAAAGTCGCCCCCTTATCTACTGCTAAGCTTTTCAATATT
CAATAACATGATACTATAAAGAGCCTTGTTGTCTATGAGCTGCATTGAGG
CCATTACGTTCAGTTACGTCATATTTTCAAGTTTCAGCCAATCAAATTGA
TTCCATTTTATTTTGCAGGATTATTATGGTGAAGTGTTGACCATTGTGTC
CAATGGAAAAGTAGAACTCGGACAAAATATTTCATACATTACTGATCCTG
ATCCAAACAATAATTATAATGATGTAAGTTGATCATGATTGGTGTCTACA
GGATTTTAATGAAGGAAACTGGTATAGGAAGAGCTCTGTTACTTTTATAA
CCCCTCGTCGAACTTGAAATTTAGTCATAACAGAAAAGCCTGCACCGCAA
TAGACACTTCTAGAATTAgtaaaaaaatttcgaacatGAGTAAAGCGGTG
TTAACTTCCTATTCGGCATAagtaattatattttatcattttccttcGAT
AGGTATACACGATTATCAATCCAGTATTAGTGAAAGCCAAGAGCAAGATT
GCTGTATGGATCATCGCTCTAGCTGTTGTCGCTGGTATCATCTTACTGGC
TCTCCTAGTCTTCGGCTTGTTCAAGGTAtgtttctgttttttatttaatg
ATTTCCTACTTTGTATGCGTATCAGAAACCTAAACCTGGCGGACTTGTAG
GCTATTTTTTCCTCTAGTTTTTGTGCTTTTTGTGCGAAAATCGTGGTTAA
AAAGGGGTTTTCATCTGGAAAGATTATACGGTTGACGTTCTCTATTTCGA
TTtgcaaggggaattggattttcattgaaaaatggaGTGCATTGAACAGT
AAAACCTCGAAGAGAGAGAGAGCACCAACTCTAGTTACTCTAATGAGGAT
TTTTGCTCTGACTCACGATCACGTTAACCAAGAAATCTTTGATTGTCTAA
CAACTCAATCTTAACTTGATTCTTTTTCTTgaagttttcattttattgtg
TTTTGACTCACTTTCAAACCTTATATTACAGCTTGGTTTCTTCAAACGTA
ATCGAAAGCCAGAGTATTACggacaaaagaaagaacaagagAAATCGCTC
CTCAAGAAATAAAGTAATGAAGAAATTTATTCGGTTTGTTGTTGGTAAGA
AATTCGTATTTTTGAAATGCATTTTACATTTTGTATTGAGATGAAGGATT
TCGACGAAAGATTCATTGTTGTGATGTGTGATAGTTTCATCATGTATATA
TGGTAATAAAGAGTTATATGGTTTTGTATGAACTGTTCACCAACCGGCTA
CCGTAATTTTTGATTGTGGAAAGCACgctcaataatttttttttacaaat
gcaACACTTGGCAGCCTTAACTCTAGCCTTTACTACCCACGATGAAAGTA
ATTGGACTCTGGCTTTCCTATTTTTTTGGTTTAtggattgattgattgat
tgattgattgattgattgattgattgattgattgattgattgattgattg
attgattgattgatcacCAAATTACAATGCAGTGAAGAGttatttatttg
aataaaatttgtaCCATACTATTTTTCAAAGCTatttttagaaaccattt
ttgttatttttctcattttttatttgtaaactcatttttttttaattccc
ttgtttttatagattagtttttcttttcacttttagCTTTATTTTTGTCC
TACTGTTACCGGAACACCCGGAAATTTACACGTCCTTAGGACTCTCTTAG
ACTTCAAATTTAGATATTATTCTAATTTTTGCTCCCTAATTTTCATAATA
TCATATGAAACGCCTATTTTATTGAAGTACCTATATTCTCCGcttgtttt
tagattttatagTAAGAATCTTCTCCCACTGAAACGTCTACAGCCGATTT
AGAATAAATTTAGAATAAATGTAGCGATAAATAATTCTAGCACCAATTCA
CGAAAAAaggggaatggaaaatttttccGTTGCTTTCTAAATATGACGTT
TGTATGCCAAAATGTAGGAAGGAACTGATAGGGAAGTTGTTTTATAGGAA
AGGAATAATTTCCAACGAAATGATTTATAGGATGACACGAATCTTGAATA
TCATCGAATTGACGCTCCTTTTCCAAAACGTAAATAAAGAGAGAAAACTC
TGTCATGTTTGTTGACAAGACCTTATAAGGAGAATCAGAATGAAAAATTT
GTAACTCTTATTTACACCACCCCCTTAGCATCCGAACCTCTTCAAAAGGG
AATGGTCACTCTTCAACACAGTGTGTTTTACGACAATTACGACATCTTGT
TTTTGTCGTTTACCAAAATTACTGACCGCAAGTCTCCttcatattacaat
tttagagaaacatttttttttaagaatttgtttttattttgaaatttaga
acaaaaaagcattttaaattcattttatcTCAACCCATAGCTTATTTATG
AATTTTATctatctttttttatatttatgttaccttttgtttttgcttta
taaatgtttattttaaaattttcaaaaaaattttcattccctttttatct
ttcttttctttgaaaaatatatatttcatttgctttaaaaataaattgtt
tgcttatttaaaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_041814XLOC_041814Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00066858-exon-scaffold_462-1491911889:57301..57781TCONS_00066858-exon-scaffold_462-1491911889:57301..57781Clytia hemisphaericaexon
TCONS_00066858-exon-scaffold_462-1510915933:57301..57781TCONS_00066858-exon-scaffold_462-1510915933:57301..57781Clytia hemisphaericaexon
TCONS_00066858-exon-scaffold_462-1575043694:57301..57781TCONS_00066858-exon-scaffold_462-1575043694:57301..57781Clytia hemisphaericaexon
TCONS_00066858-exon-scaffold_462-1491911889:58926..59060TCONS_00066858-exon-scaffold_462-1491911889:58926..59060Clytia hemisphaericaexon
TCONS_00066858-exon-scaffold_462-1510915933:58926..59060TCONS_00066858-exon-scaffold_462-1510915933:58926..59060Clytia hemisphaericaexon
TCONS_00066858-exon-scaffold_462-1575043694:58926..59060TCONS_00066858-exon-scaffold_462-1575043694:58926..59060Clytia hemisphaericaexon
TCONS_00066858-exon-scaffold_462-1491911889:59338..59457TCONS_00066858-exon-scaffold_462-1491911889:59338..59457Clytia hemisphaericaexon
TCONS_00066858-exon-scaffold_462-1510915933:59338..59457TCONS_00066858-exon-scaffold_462-1510915933:59338..59457Clytia hemisphaericaexon
TCONS_00066858-exon-scaffold_462-1575043694:59338..59457TCONS_00066858-exon-scaffold_462-1575043694:59338..59457Clytia hemisphaericaexon
TCONS_00066858-exon-scaffold_462-1491911889:59869..59973TCONS_00066858-exon-scaffold_462-1491911889:59869..59973Clytia hemisphaericaexon
TCONS_00066858-exon-scaffold_462-1510915933:59869..59973TCONS_00066858-exon-scaffold_462-1510915933:59869..59973Clytia hemisphaericaexon
TCONS_00066858-exon-scaffold_462-1575043694:59869..59973TCONS_00066858-exon-scaffold_462-1575043694:59869..59973Clytia hemisphaericaexon
TCONS_00066858-exon-scaffold_462-1491911889:60203..60325TCONS_00066858-exon-scaffold_462-1491911889:60203..60325Clytia hemisphaericaexon
TCONS_00066858-exon-scaffold_462-1510915933:60203..60325TCONS_00066858-exon-scaffold_462-1510915933:60203..60325Clytia hemisphaericaexon
TCONS_00066858-exon-scaffold_462-1575043694:60203..60325TCONS_00066858-exon-scaffold_462-1575043694:60203..60325Clytia hemisphaericaexon
TCONS_00066858-exon-scaffold_462-1491911889:60732..62313TCONS_00066858-exon-scaffold_462-1491911889:60732..62313Clytia hemisphaericaexon
TCONS_00066858-exon-scaffold_462-1510915933:60732..62313TCONS_00066858-exon-scaffold_462-1510915933:60732..62313Clytia hemisphaericaexon
TCONS_00066858-exon-scaffold_462-1575043694:60732..62313TCONS_00066858-exon-scaffold_462-1575043694:60732..62313Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_462supercontigscaffold_462:57301..62313 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.366182	0.41573	0.229137	0.260842	1.06805	0.509623	1.44448	1.55516	0.530065	0.413116	0.569703	0.383108	0.564913	0.613065	0.400425	0.554592	0.596901	0.606277	0.963734	0.379527	0.912309	0.585761	0.535554	0.431318	0.196363	0.318899	2.17189	2.20673	2.47581	2.44076
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00066858 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top