TCONS_00066843 (transcript) - C. hemisphaerica

Overview
NameTCONS_00066843
Unique NameTCONS_00066843
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length230

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00066843 ID=TCONS_00066843|Name=TCONS_00066843|organism=Clytia hemisphaerica|type=transcript|length=230bp
ATTCTGGTGAGAAGGCGAGTTTGGAGATTGGTGTGGACTGTCTGCTGGTT
TGGAAGTTTTTGATGAAGAAAAGAGTTTTATAGGACTGGTAAATGATTAT
CTAACATTACTAGAACCTCCCAGGACCATTTATCCATTTGGCAGGTATAT
ATAATATGTTTGCTTACTGTCTTTGCTTTTGGCAATGCACAATCTATGAG
ATACTTAAATTTTAGACTGTTAGAACTGNN
Run BLAST on NCBI

transcript from alignment at scaffold_460:64379..64608

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00066843 ID=TCONS_00066843|Name=TCONS_00066843|organism=Clytia hemisphaerica|type=transcript|length=230bp|location=Sequence derived from alignment at scaffold_460:64379..64608 (Clytia hemisphaerica)
NNCAGTTCTAACAGTCTAAAATTTAAGTATCTCATAGATTGTGCATTGCC
AAAAGCAAAGACAGTAAGCAAACATATTATATATACCTGCCAAATGGATA
AATGGTCCTGGGAGGTTCTAGTAATGTTAGATAATCATTTACCAGTCCTA
TAAAACTCTTTTCTTCATCAAAAACTTCCAAACCAGCAGACAGTCCACAC
CAATCTCCAAACTCGCCTTCTCACCAGAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_041804XLOC_041804Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00066843-exon-scaffold_460-1491911889:64379..64608TCONS_00066843-exon-scaffold_460-1491911889:64379..64608Clytia hemisphaericaexon
TCONS_00066843-exon-scaffold_460-1510915933:64379..64608TCONS_00066843-exon-scaffold_460-1510915933:64379..64608Clytia hemisphaericaexon
TCONS_00066843-exon-scaffold_460-1575043694:64379..64608TCONS_00066843-exon-scaffold_460-1575043694:64379..64608Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_460supercontigscaffold_460:64379..64608 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	2.2512	0	2.54266	0.89009	3.30756	0	0	1.40497	0	3.59867	4.50558	9.51516	8.94001	4.49131	4.69983	4.08501	4.48318	3.63326	0	0	0	1.44834	1.54571	2.34473	3.58337
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00066843 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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