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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00066804 ID=TCONS_00066804|Name=TCONS_00066804|organism=Clytia hemisphaerica|type=transcript|length=2648bpRun BLAST on NCBI protein sequence of TCONS_00066804-protein >TCONS_00066804-protein ID=TCONS_00066804-protein|Name=TCONS_00066804-protein|organism=Clytia hemisphaerica|type=polypeptide|length=519bp MSHSLNSMPSMDFSEDVSLQGFDEHFDPPPPDVYECPICLLVLRMPMQTERun BLAST on NCBI transcript from alignment at scaffold_46:381842..392664- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00066804 ID=TCONS_00066804|Name=TCONS_00066804|organism=Clytia hemisphaerica|type=transcript|length=10823bp|location=Sequence derived from alignment at scaffold_46:381842..392664- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_46:381842..392664- >TCONS_00066804 ID=TCONS_00066804|Name=TCONS_00066804|organism=Clytia hemisphaerica|type=CDS|length=14040bp|location=Sequence derived from alignment at scaffold_46:381842..392664- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00066804 vs. Swiss-Prot (Human)
Match: TRAF6 (TNF receptor-associated factor 6 OS=Homo sapiens GN=TRAF6 PE=1 SV=1) HSP 1 Score: 303.908 bits (777), Expect = 4.372e-92 Identity = 180/510 (35.29%), Postives = 271/510 (53.14%), Query Frame = 2
Query: 218 SMDFSEDVSLQGFDEHFDPPPPDVYECPICLLVLRMPMQTECGHRFCKSCILKVIREGRPNCPIDNERLSENQIFPDNFARREILSLSVRCRNFKQYGCKWHQELRAIDRHMETCDYSFTPCTNKCGKDVQRVHLKDHLDNDCVRRVIECEYCNIKIVYSRVVEHNETCTNFPVVCPNNCGTKLIRQQLKQHMEADCPKLILNCPYQDAGCEFQGSKVDVERHLLDD-QTATRHMTQMLGAIKLLTKRVNDQEEELKKASKLSSHSTGIEKMDVDSHY-GDTRDSASSMKSLSPRDSKEYTAKIKELEIKI-TQSRTVTEMCRSELKQNKLDMDSKMDGLAKQIQEQNSMIAEVSARVWCGSFTWRITNFENLFQQAKNQELVAIHSQPFYTAVPGYKMCLRVNLN-GIDSGAGTHVSMFVHLMQGEFDSIIQWPFSDGLELTIMDQDTQNPVHVKEE--LFARPTLQAFLRPKTPRNHKGYGYVEMIPHTTLRERHYVSNDTMIVKVRV 1729
S F E++ QG+D FDPP YECPICL+ LR +QT CGHRFCK+CI+K IR+ CP+DNE L ENQ+FPDNFA+REILSL V+C N GC ELR ++ H C+++ C +C + Q+ H+ H+ DC RR + C+ C + + H++ C V+C C T LIR+Q+ H + DCP + C + GC + + + RHL ++ Q+ R + Q + ++ ++ DS Y + R+ ++ L R ++ +I+EL K+ TQS V+E L + I+ +AE+ A+ G + W+I NF + + ++ V IHS FYT PGYK+C+R++L ++S+FVH MQGE+DS + WPF + LTI+DQ ++ PV E + A+P L AF RP PRN KG+GYV + LR+R ++ +DT++V+ V
Sbjct: 46 SSSFMEEI--QGYDVEFDPPLESKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQLFPDNFAKREILSLMVKCPN---EGCLHKMELRHLEDHQAHCEFALMDCP-QCQRPFQKFHINIHILKDCPRRQVSCDNCAASMAFEDKEIHDQNCPLANVIC-EYCNTILIREQMPNHYDLDCPTAPIPCTFSTFGCHEKMQRNHLARHLQENTQSHMRMLAQAVHSLSVIP----------------------------DSGYISEVRNFQETIHQLEGRLVRQ-DHQIRELTAKMETQSMYVSE-------------------LKRTIRTLEDKVAEIEAQQCNGIYIWKIGNFGMHLKCQEEEKPVVIHSPGFYTGKPGYKLCMRLHLQLPTAQRCANYISLFVHTMQGEYDSHLPWPFQGTIRLTILDQ-SEAPVRQNHEEIMDAKPELLAFQRPTIPRNPKGFGYVTFMHLEALRQRTFIKDDTLLVRCEV 499 The following BLAST results are available for this feature:
BLAST of TCONS_00066804 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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