TCONS_00066804-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00066804-protein
Unique NameTCONS_00066804-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length519

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00066804-protein ID=TCONS_00066804-protein|Name=TCONS_00066804-protein|organism=Clytia hemisphaerica|type=polypeptide|length=519bp
MSHSLNSMPSMDFSEDVSLQGFDEHFDPPPPDVYECPICLLVLRMPMQTE
CGHRFCKSCILKVIREGRPNCPIDNERLSENQIFPDNFARREILSLSVRC
RNFKQYGCKWHQELRAIDRHMETCDYSFTPCTNKCGKDVQRVHLKDHLDN
DCVRRVIECEYCNIKIVYSRVVEHNETCTNFPVVCPNNCGTKLIRQQLKQ
HMEADCPKLILNCPYQDAGCEFQGSKVDVERHLLDDQTATRHMTQMLGAI
KLLTKRVNDQEEELKKASKLSSHSTGIEKMDVDSHYGDTRDSASSMKSLS
PRDSKEYTAKIKELEIKITQSRTVTEMCRSELKQNKLDMDSKMDGLAKQI
QEQNSMIAEVSARVWCGSFTWRITNFENLFQQAKNQELVAIHSQPFYTAV
PGYKMCLRVNLNGIDSGAGTHVSMFVHLMQGEFDSIIQWPFSDGLELTIM
DQDTQNPVHVKEELFARPTLQAFLRPKTPRNHKGYGYVEMIPHTTLRERH
YVSNDTMIVKVRVKSSSSS
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_041769XLOC_041769Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00066804TCONS_00066804Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001841Znf_RING
IPR003613Ubox_domain
IPR001293Znf_TRAF
IPR008974TRAF-like
IPR012227TNF_rcpt--assoc_TRAF
IPR013083Znf_RING/FYVE/PHD
IPR017907Znf_RING_CS
IPR002083MATH/TRAF_dom
Vocabulary: Biological Process
TermDefinition
GO:0016567protein ubiquitination
GO:0042981regulation of apoptotic process
GO:0007165signal transduction
Vocabulary: Molecular Function
TermDefinition
GO:0004842ubiquitin-protein transferase activity
GO:0008270zinc ion binding
GO:0005515protein binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0016567 protein ubiquitination
biological_process GO:0042981 regulation of apoptotic process
biological_process GO:0007165 signal transduction
molecular_function GO:0005515 protein binding
molecular_function GO:0004842 ubiquitin-protein transferase activity
molecular_function GO:0008270 zinc ion binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 250..270
NoneNo IPR availablePFAMPF13923zf-C3HC4_2coord: 35..73
e-value: 9.0E-11
score: 41.3
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 264..304
NoneNo IPR availableCDDcd00270MATH_TRAF_Ccoord: 367..513
e-value: 1.53795E-58
score: 191.667
NoneNo IPR availableSUPERFAMILY57850RING/U-boxcoord: 29..102
IPR001841Zinc finger, RING-typeSMARTSM00184ring_2coord: 36..74
e-value: 1.4E-7
score: 41.2
IPR001841Zinc finger, RING-typePROSITEPS50089ZF_RING_2coord: 36..75
score: 11.53
IPR001841Zinc finger, RING-typeCDDcd00162RINGcoord: 35..73
e-value: 4.60376E-8
score: 48.9812
IPR003613U box domainSMARTSM00504Ubox_2coord: 33..96
e-value: 0.0014
score: 22.4
IPR001293Zinc finger, TRAF-typePFAMPF02176zf-TRAFcoord: 174..232
e-value: 1.1E-14
score: 54.8
IPR001293Zinc finger, TRAF-typePROSITEPS50145ZF_TRAFcoord: 120..162
score: 12.06
IPR001293Zinc finger, TRAF-typePROSITEPS50145ZF_TRAFcoord: 174..223
score: 14.134
IPR008974TRAF-likeGENE3D2.60.210.10coord: 347..517
e-value: 1.3E-31
score: 109.2
IPR008974TRAF-likeSUPERFAMILY49599TRAF domain-likecoord: 157..208
IPR008974TRAF-likeSUPERFAMILY49599TRAF domain-likecoord: 95..157
IPR008974TRAF-likeSUPERFAMILY49599TRAF domain-likecoord: 366..514
IPR012227TNF receptor-associated factor TRAFPIRSFPIRSF015614TRAFcoord: 4..519
e-value: 6.1E-132
score: 438.7
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10coord: 14..97
e-value: 4.1E-14
score: 51.7
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10coord: 149..188
e-value: 1.9E-7
score: 30.7
coord: 189..233
e-value: 5.6E-12
score: 45.2
coord: 98..148
e-value: 1.9E-12
score: 46.7
IPR017907Zinc finger, RING-type, conserved sitePROSITEPS00518ZF_RING_1coord: 51..60
IPR002083MATH/TRAF domainPROSITEPS50144MATHcoord: 366..513
score: 20.57

Blast
[Close]
BLAST of TCONS_00066804-protein vs. Swiss-Prot (Human)
Match: TRAF6 (TNF receptor-associated factor 6 OS=Homo sapiens GN=TRAF6 PE=1 SV=1)

HSP 1 Score: 305.449 bits (781), Expect = 7.860e-98
Identity = 180/512 (35.16%), Postives = 272/512 (53.12%), Query Frame = 0 
Query:   10 SMDFSEDVSLQGFDEHFDPPPPDVYECPICLLVLRMPMQTECGHRFCKSCILKVIREGRPNCPIDNERLSENQIFPDNFARREILSLSVRCRNFKQYGCKWHQELRAIDRHMETCDYSFTPCTNKCGKDVQRVHLKDHLDNDCVRRVIECEYCNIKIVYSRVVEHNETCTNFPVVCPNNCGTKLIRQQLKQHMEADCPKLILNCPYQDAGCEFQGSKVDVERHLLDD-QTATRHMTQMLGAIKLLTKRVNDQEEELKKASKLSSHSTGIEKMDVDSHY-GDTRDSASSMKSLSPRDSKEYTAKIKELEIKI-TQSRTVTEMCRSELKQNKLDMDSKMDGLAKQIQEQNSMIAEVSARVWCGSFTWRITNFENLFQQAKNQELVAIHSQPFYTAVPGYKMCLRVNLN-GIDSGAGTHVSMFVHLMQGEFDSIIQWPFSDGLELTIMDQDTQNPVHVKEE--LFARPTLQAFLRPKTPRNHKGYGYVEMIPHTTLRERHYVSNDTMIVKVRVKS 515
            S  F E++  QG+D  FDPP    YECPICL+ LR  +QT CGHRFCK+CI+K IR+    CP+DNE L ENQ+FPDNFA+REILSL V+C N    GC    ELR ++ H   C+++   C  +C +  Q+ H+  H+  DC RR + C+ C   + +     H++ C    V+C   C T LIR+Q+  H + DCP   + C +   GC  +  +  + RHL ++ Q+  R + Q + ++ ++                             DS Y  + R+   ++  L  R  ++   +I+EL  K+ TQS  V+E                   L + I+     +AE+ A+   G + W+I NF    +  + ++ V IHS  FYT  PGYK+C+R++L          ++S+FVH MQGE+DS + WPF   + LTI+DQ ++ PV    E  + A+P L AF RP  PRN KG+GYV  +    LR+R ++ +DT++V+  V +
Sbjct:   46 SSSFMEEI--QGYDVEFDPPLESKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQLFPDNFAKREILSLMVKCPN---EGCLHKMELRHLEDHQAHCEFALMDCP-QCQRPFQKFHINIHILKDCPRRQVSCDNCAASMAFEDKEIHDQNCPLANVIC-EYCNTILIREQMPNHYDLDCPTAPIPCTFSTFGCHEKMQRNHLARHLQENTQSHMRMLAQAVHSLSVIP----------------------------DSGYISEVRNFQETIHQLEGRLVRQ-DHQIRELTAKMETQSMYVSE-------------------LKRTIRTLEDKVAEIEAQQCNGIYIWKIGNFGMHLKCQEEEKPVVIHSPGFYTGKPGYKLCMRLHLQLPTAQRCANYISLFVHTMQGEYDSHLPWPFQGTIRLTILDQ-SEAPVRQNHEEIMDAKPELLAFQRPTIPRNPKGFGYVTFMHLEALRQRTFIKDDTLLVRCEVST 501
The following BLAST results are available for this feature:
BLAST of TCONS_00066804-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TRAF67.860e-9835.16TNF receptor-associated factor 6 OS=Homo sapiens G... [more]
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