Sequence
The following sequences are available for this feature:
polypeptide sequence
>TCONS_00066804-protein ID=TCONS_00066804-protein|Name=TCONS_00066804-protein|organism=Clytia hemisphaerica|type=polypeptide|length=519bp Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following
gene feature:
This polypeptide derives from the following
transcript feature(s):
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: Biological Process
Term Definition
GO:0016567 protein ubiquitination GO:0042981 regulation of apoptotic process GO:0007165 signal transduction
Vocabulary: Molecular Function
Term Definition
GO:0004842 ubiquitin-protein transferase activity GO:0008270 zinc ion binding GO:0005515 protein binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category
Term Accession
Term Name
biological_process
GO:0016567 protein ubiquitination
biological_process
GO:0042981 regulation of apoptotic process
biological_process
GO:0007165 signal transduction
molecular_function
GO:0005515 protein binding
molecular_function
GO:0004842 ubiquitin-protein transferase activity
molecular_function
GO:0008270 zinc ion binding
InterPro
Analysis Name:
InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
50 100 150 200 250 300 350 400 450 500 Score = Expect = 9.0E-11 / Score = 41.3 Score = Expect = 1.53795E-58 / Score = 191.667 Score = Expect = 1.4E-7 / Score = 41.2 Score = 11.53 Expect = 4.60376E-8 / Score = 48.9812 Expect = 0.0014 / Score = 22.4 Expect = 1.1E-14 / Score = 54.8 Score = 12.06 Score = 14.134 Expect = 1.3E-31 / Score = 109.2 Score = Score = Score = Expect = 6.1E-132 / Score = 438.7 Expect = 4.1E-14 / Score = 51.7 Expect = 1.9E-12 / Score = 46.7 Expect = 1.9E-7 / Score = 30.7 Expect = 5.6E-12 / Score = 45.2 Score = Score = 20.57 Sequence Coil PF13923 mobidb-lite cd00270 SSF57850 SM00184 PS50089 cd00162 SM00504 PF02176 PS50145 PS50145 G3DSA:2.60.210.10 SSF49599 SSF49599 SSF49599 PIRSF015614 G3DSA:3.30.40.10 G3DSA:3.30.40.10 PS00518 PS50144
IPR Term IPR Description Source Source Term Source Description Alignment
None No IPR available COILS Coil Coil coord: 250..270 None No IPR available PFAM PF13923 zf-C3HC4_2 coord: 35..73 None No IPR available MOBIDB_LITE mobidb-lite disorder_prediction coord: 264..304 None No IPR available CDD cd00270 MATH_TRAF_C coord: 367..513 None No IPR available SUPERFAMILY 57850 RING/U-box coord: 29..102 IPR001841 Zinc finger, RING-type SMART SM00184 ring_2 coord: 36..74 IPR001841 Zinc finger, RING-type PROSITE PS50089 ZF_RING_2 coord: 36..75 IPR001841 Zinc finger, RING-type CDD cd00162 RING coord: 35..73 IPR003613 U box domain SMART SM00504 Ubox_2 coord: 33..96 IPR001293 Zinc finger, TRAF-type PFAM PF02176 zf-TRAF coord: 174..232 IPR001293 Zinc finger, TRAF-type PROSITE PS50145 ZF_TRAF coord: 120..162 IPR001293 Zinc finger, TRAF-type PROSITE PS50145 ZF_TRAF coord: 174..223 IPR008974 TRAF-like GENE3D 2.60.210.10 coord: 347..517 IPR008974 TRAF-like SUPERFAMILY 49599 TRAF domain-like coord: 157..208 IPR008974 TRAF-like SUPERFAMILY 49599 TRAF domain-like coord: 95..157 IPR008974 TRAF-like SUPERFAMILY 49599 TRAF domain-like coord: 366..514 IPR012227 TNF receptor-associated factor TRAF PIRSF PIRSF015614 TRAF coord: 4..519 IPR013083 Zinc finger, RING/FYVE/PHD-type GENE3D 3.30.40.10 coord: 14..97 IPR013083 Zinc finger, RING/FYVE/PHD-type GENE3D 3.30.40.10 coord: 149..188 IPR017907 Zinc finger, RING-type, conserved site PROSITE PS00518 ZF_RING_1 coord: 51..60 IPR002083 MATH/TRAF domain PROSITE PS50144 MATH coord: 366..513
Blast
BLAST of TCONS_00066804-protein vs. Swiss-Prot (Human)
Match:
TRAF6 (TNF receptor-associated factor 6 OS=Homo sapiens GN=TRAF6 PE=1 SV=1)
HSP 1 Score: 305.449 bits (781), Expect = 7.860e-98
Identity = 180/512 (35.16%), Postives = 272/512 (53.12%), Query Frame = 0
Query: 10 SMDFSEDVSLQGFDEHFDPPPPDVYECPICLLVLRMPMQTECGHRFCKSCILKVIREGRPNCPIDNERLSENQIFPDNFARREILSLSVRCRNFKQYGCKWHQELRAIDRHMETCDYSFTPCTNKCGKDVQRVHLKDHLDNDCVRRVIECEYCNIKIVYSRVVEHNETCTNFPVVCPNNCGTKLIRQQLKQHMEADCPKLILNCPYQDAGCEFQGSKVDVERHLLDD-QTATRHMTQMLGAIKLLTKRVNDQEEELKKASKLSSHSTGIEKMDVDSHY-GDTRDSASSMKSLSPRDSKEYTAKIKELEIKI-TQSRTVTEMCRSELKQNKLDMDSKMDGLAKQIQEQNSMIAEVSARVWCGSFTWRITNFENLFQQAKNQELVAIHSQPFYTAVPGYKMCLRVNLN-GIDSGAGTHVSMFVHLMQGEFDSIIQWPFSDGLELTIMDQDTQNPVHVKEE--LFARPTLQAFLRPKTPRNHKGYGYVEMIPHTTLRERHYVSNDTMIVKVRVKS 515
S F E++ QG+D FDPP YECPICL+ LR +QT CGHRFCK+CI+K IR+ CP+DNE L ENQ+FPDNFA+REILSL V+C N GC ELR ++ H C+++ C +C + Q+ H+ H+ DC RR + C+ C + + H++ C V+C C T LIR+Q+ H + DCP + C + GC + + + RHL ++ Q+ R + Q + ++ ++ DS Y + R+ ++ L R ++ +I+EL K+ TQS V+E L + I+ +AE+ A+ G + W+I NF + + ++ V IHS FYT PGYK+C+R++L ++S+FVH MQGE+DS + WPF + LTI+DQ ++ PV E + A+P L AF RP PRN KG+GYV + LR+R ++ +DT++V+ V +
Sbjct: 46 SSSFMEEI--QGYDVEFDPPLESKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQLFPDNFAKREILSLMVKCPN---EGCLHKMELRHLEDHQAHCEFALMDCP-QCQRPFQKFHINIHILKDCPRRQVSCDNCAASMAFEDKEIHDQNCPLANVIC-EYCNTILIREQMPNHYDLDCPTAPIPCTFSTFGCHEKMQRNHLARHLQENTQSHMRMLAQAVHSLSVIP----------------------------DSGYISEVRNFQETIHQLEGRLVRQ-DHQIRELTAKMETQSMYVSE-------------------LKRTIRTLEDKVAEIEAQQCNGIYIWKIGNFGMHLKCQEEEKPVVIHSPGFYTGKPGYKLCMRLHLQLPTAQRCANYISLFVHTMQGEYDSHLPWPFQGTIRLTILDQ-SEAPVRQNHEEIMDAKPELLAFQRPTIPRNPKGFGYVTFMHLEALRQRTFIKDDTLLVRCEVST 501
The following BLAST results are available for this feature:
BLAST of TCONS_00066804-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (
Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens) )
Total hits: 1
M S H S L N S M P S M D F S E D V S L Q G F D E H F D P P P P D V Y E C P I C L L V L R M P M Q T E C G H R F C K S C I L K V I R E G R P N C P I D N E R L S E N Q I F P D N F A R R E I L S L S V R C R N F K Q Y G C K W H Q E L R A I D R H M E T C D Y S F T P C T N K C G K D V Q R V H L K D H L D N D C V R R V I E C E Y C N I K I V Y S R V V E H N E T C T N F P V V C P N N C G T K L I R Q Q L K Q H M E A D C P K L I L N C P Y Q D A G C E F Q G S K V D V E R H L L D D Q T A T R H M T Q M L G A I K L L T K R V N D Q E E E L K K A S K L S S H S T G I E K M D V D S H Y G D T R D S A S S M K S L S P R D S K E Y T A K I K E L E I K I T Q S R T V T E M C R S E L K Q N K L D M D S K M D G L A K Q I Q E Q N S M I A E V S A R V W C G S F T W R I T N F E N L F Q Q A K N Q E L V A I H S Q P F Y T A V P G Y K M C L R V N L N G I D S G A G T H V S M F V H L M Q G E F D S I I Q W P F S D G L E L T I M D Q D T Q N P V H V K E E L F A R P T L Q A F L R P K T P R N H K G Y G Y V E M I P H T T L R E R H Y V S N D T M I V K V R V K S S S S S 50 100 150 200 250 300 350 400 450 500 Expect = 7.86e-98 / Id = 35.16 Sequence TRAF6
Match Name E-value Identity Description
TRAF6 7.860e-98 35.16 TNF receptor-associated factor 6 OS=Homo sapiens G... [more]
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