TCONS_00066775 (transcript) - C. hemisphaerica

Overview
NameTCONS_00066775
Unique NameTCONS_00066775
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1192

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00066775 ID=TCONS_00066775|Name=TCONS_00066775|organism=Clytia hemisphaerica|type=transcript|length=1192bp
ctctcgggtacctaatagccgggggggttggaataagcaggggggttgga
aaaaatttcaaaatttaataagcgggggggttggaataaaNGAGAGTAAC
AGAAAAACTCGAATAGAGGGAGTTGAAATTAAAAAGAGTTATAACCCCTC
TTTCAGGGCAACAACCGATGAAATCGACACGTGGAAGATCATTAATTTGA
TGCGTGTGATTGGTTCATTTCTTGGTTGGATTATGGTTGCTATGGCACCC
GATGATGATCAAACTGCTGAAACGATAAAGAAAGCTTCAGAAAAAGAAGA
CAACGCTCTTAACCAGTTCGAAATGCATTCTGTGCAAACGTCAACTATAC
CCAACTCAAACTGAACCCAACGCAAAGCATCCTGGGTATGAGTGgtcctt
ttttcaactttcacttttatattttttattctcagaaaactttttattat
agtttgctgtaatatatttttattagaTATTTAGTATATTCATTTATTTC
CGTATACAATGGAGTATAACTcgttaactcgaacctctataacccGAAtg
actccttaactcgaacaagtttgccTTAAATCttacataactcgaaattt
ccttaactcgaacaaatttatgTTTCCCAtgcatgttcgagttatggaga
ctacaCTGTAAGAGCAATCGTGCGTTAAGATTCAGTAAGTTTTTATCCTA
CCAAATTGCGCAATTATGtattctttaaaattcaaataacttgaaaaata
taaaatcattCATACTCACTCATTTTTGACGAACTTTCTTTCCATACTAC
TTATCTTTTGATGCACGAAAATGTTGGTCATGGTCATGGTAAAGGGAATT
TCCAAGTGACCAAATCGGGGATTTCCCCTCTTTCTTTTCATAcatatttg
atttaaaaacaaatgcAGGATCTCATTTAAAAATATAGTTAGTTCGTTTG
AGCTTTTAAAAACTTAACATAATCAAATTTGTAGTTgatcattttgcttg
tttacaGATAGATTTTCAATCTTGAGGCACTCTTACAGAGCTTTTCCTGC
AACGAACGTTCCACTTACAACAACGTCGCTCTCAGGTTGAgggaaaaatg
aaatatataaaCTATTGTGAACAATCAATCAGTATATATTTTGATTGGTA
TTCAATCTCAATGGTTATGGTTAGTTGTTATTTCAAAACGAC
Run BLAST on NCBI

protein sequence of TCONS_00066775-protein

>TCONS_00066775-protein ID=TCONS_00066775-protein|Name=TCONS_00066775-protein|organism=Clytia hemisphaerica|type=polypeptide|length=120bp
SRVPNSRGGWNKQGGWKKFQNLISGGVGIXESNRKTRIEGVEIKKSYNPS
FRATTDEIDTWKIINLMRVIGSFLGWIMVAMAPDDDQTAETIKKASEKED
NALNQFEMHSVQTSTIPNSN
Run BLAST on NCBI

transcript from alignment at scaffold_46:402774..405889+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00066775 ID=TCONS_00066775|Name=TCONS_00066775|organism=Clytia hemisphaerica|type=transcript|length=3116bp|location=Sequence derived from alignment at scaffold_46:402774..405889+ (Clytia hemisphaerica)
ctctcgggtacctaatagccgggggggttggaataagcaggggggttgga
aaaaatttcaaaatttaataagcgggggggttggaataaaNGAGAGTAAC
AGAAAAACTCGAATAGAGGGAGTTGAAATTAAAAAGAGTTATAACCCCTC
TTTCAGGGCAACAACCGATGAAATCGACACGTGGAAGATCATTAATTTGA
TGCGTGTGATTGGTTCATTTCTTGGTTGGATTATGGTTGCTATGGCACCC
GATGATGATCAAACTGCTGGTCAGTACTTTTACTTTGATGGTACCCGACT
GTATACAGCGATTTCGTTTTCTAAGAGGCTTTACTAGTTGCTAGTTCGCT
TTCGGCTATGTATATGAATACTCTATAGGCACAGTGACCCTTCTAATGTC
CCTTATAACTTGTCTGGTTTTGGAACAAATATTCGGACTCGAAAGGCTTT
ACAatcaaatataaagaaaaattacttaCGTTTCCTGTAGtttttttgta
gttttggtaaaaaaatacttctttctttaaaaaatattctctCTAATAAA
ACGTTTTCTTCGACTATTCAACACAATAATTAATTCTCCAAAATTGCCAG
CAAATGTCATGCGTCTGTCTTCATGTTTTCAAGCGTTTGCCTACCACCAA
ATCCTAGAAAAAGAataatcattttaaaaattcagATGATGTTAgcttga
caaaataaaaaagtactaATATGACTGCTTCTGACAGTAtcataaaaaca
aatttggctTTTGAAAGTGAAATGGCTTCAAATTACTGGGGCCTCTCTTG
AAACTTTCATATCCCACTCAGGAAACTCCACTCTCATAAAAAGCTATTTT
CTCAGAGTAAGATGATTTTCAAACCTACAGCAATAccaaatgttaaatct
agtctgaattaggaccctaacctaagaatatgctgtaagaatattttagg
atgattttcccaaaaaagttaagaatatcattcttataaaaaagcgtgta
ctctcgggtacctaatagccgtcccccccgctgattaatctttcgaaaat
tttccacccaggacattcttattccaacNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNgaaaattttcgaaaaattaattagcggggggg
acggctattaggtacccgagagtaggtacCCGAGGGTACTTTCGAATCTG
AACTCTTGTTTATAAATTGTTTCTGCTCTTTCTTTAATTACAGAAACGAT
AAAGAAAGCTTCAGAAAAAGAAGACAACGCTCTTAACCAGTTCGAAATGC
ATTCTGTGCAAACGTCAACTATACCCAACTCAAACTGAACCCAACGCAAA
GCATCCTGGGTATGAGTGgtccttttttcaactttcacttttatattttt
tattctcagaaaactttttattatagtttgctgtaatatatttttattag
aTATTTAGTATATTCATTTATTTCCGTATACAATGGAGTATAACTcgtta
actcgaacctctataacccGAAtgactccttaactcgaacaagtttgccT
TAAATCttacataactcgaaatttccttaactcgaacaaatttatgTTTC
CCAtgcatgttcgagttatggagactacaCTGTAAGAGCAATCGTGCGTT
AAGATTCAGTAAGTTTTTATCCTACCAAATTGCGCAATTATGtattcttt
aaaattcaaataacttgaaaaatataaaatcattCATACTCACTCATTTT
TGACGAACTTTCTTTCCATACTACTTATCTTTTGATGCACGAAAATGTTG
GTCATGGTCATGGTAAAGGGAATTTCCAAGTGACCAAATCGGGGATTTCC
CCTCTTTCTTTTCATAcatatttgatttaaaaacaaatgcAGGATCTCAT
TTAAAAATATAGTTAGTTCGTTTGAGCTTTTAAAAACTTAACATAATCAA
ATTTGTAGTTgatcattttgcttgtttacaGATAGATTTTCAATCTTGAG
GCACTCTTACAGAGCTTTTCCTGCAACGAACGTTCCACTTACAACAACGT
CGCTCTCAGGTTGAgggaaaaatgaaatatataaaCTATTGTGAACAATC
AATCAGTATATATTTTGATTGGTATTCAATCTCAATGGTTATGGTTAGTT
GTTATTTCAAAACGAC

Coding sequence (CDS) from alignment at scaffold_46:402774..405889+

>TCONS_00066775 ID=TCONS_00066775|Name=TCONS_00066775|organism=Clytia hemisphaerica|type=CDS|length=726bp|location=Sequence derived from alignment at scaffold_46:402774..405889+ (Clytia hemisphaerica)
tctcgggtacctaatagccgggggggttggaataagcaggggggttggaa
aaaatttcaaaatttaataagcgggggggttggaataaaNGAGAGTAACA
GAAAAACTCGAATAGAGGGAGTTGAAATTAAAAAGAGTTATAACCCCTCT
TTCAGGGCAACAACCGATGAAATCGACACGTGGAAGATCATTAATTTGAT
GCGTGTGATTGGTTCATTTCTTGGTTGGATTATGGTTGCTATGGCACCCG
ATGATGATCAAACTGCTGAAACGATAAAGAAAGCTTCAGAAAAAGAAGAC
AACGCTCTTAACCAGTTCGAAATGCATTCTGTGCAAACGTCAACTATACC
CAACTCAAACTGAtctcgggtacctaatagccgggggggttggaataagc
aggggggttggaaaaaatttcaaaatttaataagcgggggggttggaata
aaNGAGAGTAACAGAAAAACTCGAATAGAGGGAGTTGAAATTAAAAAGAG
TTATAACCCCTCTTTCAGGGCAACAACCGATGAAATCGACACGTGGAAGA
TCATTAATTTGATGCGTGTGATTGGTTCATTTCTTGGTTGGATTATGGTT
GCTATGGCACCCGATGATGATCAAACTGCTGAAACGATAAAGAAAGCTTC
AGAAAAAGAAGACAACGCTCTTAACCAGTTCGAAATGCATTCTGTGCAAA
CGTCAACTATACCCAACTCAAACTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_041759XLOC_041759Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00066775-proteinTCONS_00066775-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00066775-exon-scaffold_46-1491911889:402774..403042TCONS_00066775-exon-scaffold_46-1491911889:402774..403042Clytia hemisphaericaexon
TCONS_00066775-exon-scaffold_46-1510915933:402774..403042TCONS_00066775-exon-scaffold_46-1510915933:402774..403042Clytia hemisphaericaexon
TCONS_00066775-exon-scaffold_46-1575043694:402774..403042TCONS_00066775-exon-scaffold_46-1575043694:402774..403042Clytia hemisphaericaexon
TCONS_00066775-exon-scaffold_46-1491911889:404967..405889TCONS_00066775-exon-scaffold_46-1491911889:404967..405889Clytia hemisphaericaexon
TCONS_00066775-exon-scaffold_46-1510915933:404967..405889TCONS_00066775-exon-scaffold_46-1510915933:404967..405889Clytia hemisphaericaexon
TCONS_00066775-exon-scaffold_46-1575043694:404967..405889TCONS_00066775-exon-scaffold_46-1575043694:404967..405889Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_46supercontigscaffold_46:402774..405889 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
6.85735	6.89154	1.3541	0.71963	9.15017	7.34181	7.6155	6.29742	4.59098	6.37789	7.1668	4.42004	5.03415	4.90703	5.16611	6.95953	3.52217	4.06611	3.06927	3.26806	2.73918	3.42114	15.3479	11.3068	6.81777	8.62881	3.9449	5.53445	11.5769	12.123
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00066775 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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