TCONS_00066774 (transcript) - C. hemisphaerica

Overview
NameTCONS_00066774
Unique NameTCONS_00066774
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length342

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00066774 ID=TCONS_00066774|Name=TCONS_00066774|organism=Clytia hemisphaerica|type=transcript|length=342bp
GACGACACATCTATGGTTTCGAAGCATCGCAACGATTTGTCACGGTCTGT
TGGCAGGACTTGCACTGGGTCAATGTATTTTCGTCTATTCGTTAACAAGC
ATCAGTGATCGAGTGTTCTTGGAGAATTACTACAAACTCGCGTTACCATT
CCAATCGATGTATTATTTTCTGCTGGCGATCTCAACTATCTCTATACTGG
ATAGGTATTCCAATATGAGTTCAGGATGGGGGTCGTTCTTTCTACGACTT
TTAACAAGACCCTCCAGAGCACTAGCATTAGTTGCATACCTCCTAGCGTT
GGTATTTTCTACTTCGCTGACACAACTAGACGATAAAATTAG
Run BLAST on NCBI

protein sequence of TCONS_00066774-protein

>TCONS_00066774-protein ID=TCONS_00066774-protein|Name=TCONS_00066774-protein|organism=Clytia hemisphaerica|type=polypeptide|length=113bp
TTHLWFRSIATICHGLLAGLALGQCIFVYSLTSISDRVFLENYYKLALPF
QSMYYFLLAISTISILDRYSNMSSGWGSFFLRLLTRPSRALALVAYLLAL
VFSTSLTQLDDKI
Run BLAST on NCBI

transcript from alignment at scaffold_46:401528..402378+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00066774 ID=TCONS_00066774|Name=TCONS_00066774|organism=Clytia hemisphaerica|type=transcript|length=851bp|location=Sequence derived from alignment at scaffold_46:401528..402378+ (Clytia hemisphaerica)
GACGACACATCTATGGTTTCGAAGCATCGCAACGATTTGTCACGGTCTGT
TGGCAGGTGCGTGAAATCTCATTCTCTATGTGACCTATCCTTAAACATTT
ACACTTTACAGAAATATAATCACAATCGAGATTTCCCATGTGATTCGTAG
CGACTTTAAAAAATTGCACGTTTGATAGATTTGAGTTTTCAATTTTAAGG
ACTTGCACTGGGTCAATGTATTTTCGTCTATTCGTTAACAAGCATCAGTG
ATCGAGTGTTCTTGGAGAATTACTACAAACTCGCGTTACCATTCCAATCG
ATGTATTATTTTCTGCTGGCGATCTCAACTATCTCTATACTGGATAGGTA
AGTATTGTTGATAGTGTCCATTTTACTCTTTGTCAACTACATTAAATTTG
TGGTATAATGCCTTAGGCGTAGAAAAAATAAGTGGGTTTTACTGCTGAAC
AACATCAAACTCTTTGGCTACTCTTTGGGCTTGAACTCGTGTGATGTGTC
ATATTTATAAAGCTTTCCCTTTGCTACGACTAAAGACTGATAATTTCTAT
ATAGAAAAAGGCAGTTAAAAACcttttatttattctttcagGTATTCCAA
TATGAGTTCAGGATGGGGGTCGTTCTTTCTACGACTTTTAACAAGACCCT
CCAGAGCACTAGCATTAGTTGGTAAGCGTTTTTATTAACGATTATTTGGC
CGATAATTATTCATTTGAAAATATAGTCTATTATACTTGAGTCAATAGCT
AGTTTTAAGCCATTTTGAATTTGCAATTTCTCTTGTTTTCCAGCATACCT
CCTAGCGTTGGTATTTTCTACTTCGCTGACACAACTAGACGATAAAATTA
G

Coding sequence (CDS) from alignment at scaffold_46:401528..402378+

>TCONS_00066774 ID=TCONS_00066774|Name=TCONS_00066774|organism=Clytia hemisphaerica|type=CDS|length=1356bp|location=Sequence derived from alignment at scaffold_46:401528..402378+ (Clytia hemisphaerica)
ACGACACATCTATGGTTTCGAAGCATCGCAACGATTTGTCACGGTCTGTT
GGCAGGACTTGCACTGGGTCAATGTATTTTCGTCTATTCGTTAACAAGCA
TCAGTGATCGAGTGTTCTTGGAGAATTACTACAAACTCGCGTTACCATTC
CAATCGATGTATTATTTTCTGCTGGCGATCTCAACTATCTCTATACTGGA
TAGGTATTCCAATATGAGTTCAGGATGGGGGTCGTTCTTTCTACGACTTT
TAACAAGACCCTCCAGAGCACTAGCATTAGTTGCATACCTCCTAGCGTTG
GTATTTTCTACTTCGCTGACACAACTAGACGATAAAATTACGACACATCT
ATGGTTTCGAAGCATCGCAACGATTTGTCACGGTCTGTTGGCAGGACTTG
CACTGGGTCAATGTATTTTCGTCTATTCGTTAACAAGCATCAGTGATCGA
GTGTTCTTGGAGAATTACTACAAACTCGCGTTACCATTCCAATCGATGTA
TTATTTTCTGCTGGCGATCTCAACTATCTCTATACTGGATAGGTATTCCA
ATATGAGTTCAGGATGGGGGTCGTTCTTTCTACGACTTTTAACAAGACCC
TCCAGAGCACTAGCATTAGTTGCATACCTCCTAGCGTTGGTATTTTCTAC
TTCGCTGACACAACTAGACGATAAAATTACGACACATCTATGGTTTCGAA
GCATCGCAACGATTTGTCACGGTCTGTTGGCAGGACTTGCACTGGGTCAA
TGTATTTTCGTCTATTCGTTAACAAGCATCAGTGATCGAGTGTTCTTGGA
GAATTACTACAAACTCGCGTTACCATTCCAATCGATGTATTATTTTCTGC
TGGCGATCTCAACTATCTCTATACTGGATAGGTATTCCAATATGAGTTCA
GGATGGGGGTCGTTCTTTCTACGACTTTTAACAAGACCCTCCAGAGCACT
AGCATTAGTTGCATACCTCCTAGCGTTGGTATTTTCTACTTCGCTGACAC
AACTAGACGATAAAATTACGACACATCTATGGTTTCGAAGCATCGCAACG
ATTTGTCACGGTCTGTTGGCAGGACTTGCACTGGGTCAATGTATTTTCGT
CTATTCGTTAACAAGCATCAGTGATCGAGTGTTCTTGGAGAATTACTACA
AACTCGCGTTACCATTCCAATCGATGTATTATTTTCTGCTGGCGATCTCA
ACTATCTCTATACTGGATAGGTATTCCAATATGAGTTCAGGATGGGGGTC
GTTCTTTCTACGACTTTTAACAAGACCCTCCAGAGCACTAGCATTAGTTG
CATACCTCCTAGCGTTGGTATTTTCTACTTCGCTGACACAACTAGACGAT
AAAATT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_041758XLOC_041758Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00066774-exon-scaffold_46-1491911889:401528..401583TCONS_00066774-exon-scaffold_46-1491911889:401528..401583Clytia hemisphaericaexon
TCONS_00066774-exon-scaffold_46-1510915933:401528..401583TCONS_00066774-exon-scaffold_46-1510915933:401528..401583Clytia hemisphaericaexon
TCONS_00066774-exon-scaffold_46-1575043694:401528..401583TCONS_00066774-exon-scaffold_46-1575043694:401528..401583Clytia hemisphaericaexon
TCONS_00066774-exon-scaffold_46-1491911889:401727..401874TCONS_00066774-exon-scaffold_46-1491911889:401727..401874Clytia hemisphaericaexon
TCONS_00066774-exon-scaffold_46-1510915933:401727..401874TCONS_00066774-exon-scaffold_46-1510915933:401727..401874Clytia hemisphaericaexon
TCONS_00066774-exon-scaffold_46-1575043694:401727..401874TCONS_00066774-exon-scaffold_46-1575043694:401727..401874Clytia hemisphaericaexon
TCONS_00066774-exon-scaffold_46-1491911889:402119..402198TCONS_00066774-exon-scaffold_46-1491911889:402119..402198Clytia hemisphaericaexon
TCONS_00066774-exon-scaffold_46-1510915933:402119..402198TCONS_00066774-exon-scaffold_46-1510915933:402119..402198Clytia hemisphaericaexon
TCONS_00066774-exon-scaffold_46-1575043694:402119..402198TCONS_00066774-exon-scaffold_46-1575043694:402119..402198Clytia hemisphaericaexon
TCONS_00066774-exon-scaffold_46-1491911889:402321..402378TCONS_00066774-exon-scaffold_46-1491911889:402321..402378Clytia hemisphaericaexon
TCONS_00066774-exon-scaffold_46-1510915933:402321..402378TCONS_00066774-exon-scaffold_46-1510915933:402321..402378Clytia hemisphaericaexon
TCONS_00066774-exon-scaffold_46-1575043694:402321..402378TCONS_00066774-exon-scaffold_46-1575043694:402321..402378Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00066774-proteinTCONS_00066774-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_46supercontigscaffold_46:401528..402378 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
28.8088	21.8502	6.34255	1.18194	39.5698	35.8167	25.7211	30.501	18.4323	38.7019	28.6467	22.3843	23.4176	21.5558	22.5688	33.16	22.0272	20.3194	13.6109	8.01157	12.6375	11.6992	46.1831	39.4846	32.6492	29.3942	12.8018	15.2238	37.0088	42.2308
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR029409TMEM237
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00066774 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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