TCONS_00066773 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00066773
Unique Name	TCONS_00066773
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	725

Sequence

The following sequences are available for this feature:

transcript sequence
protein sequence
transcript from alignment at scaffold_46:396967..399728+
coding sequence from alignment at scaffold_46:396967..399728+

transcript sequence

>TCONS_00066773 ID=TCONS_00066773|Name=TCONS_00066773|organism=Clytia hemisphaerica|type=transcript|length=725bp
AATGTTTGGTGATGAGTCAGGAGGCTCACAACAAGAGTTGACAGGCCGTG
AAAAACGAAACCGCAGAAATAGACGCGAAGAACAAAATGGTATTCCTGCC
AACGAAGGAGTGCATCAAAAATCCAAATCACGCGTCCGCTCCAGTCGTGA
TCGCTTATCGTTCGACCCTCCTCCGTACGATAAAAATGATCCGAATGTTG
TTTCAAGAAAGAAGAAACAAGTACGCAGGAGGAGTGACTTCGTAGAAAAC
AACGATGAGCCTCCTGCTCGAAGCGCCACGAAGAAACAGCGTACAACTCC
TCACCGCCTTCCACGTTCAGTCAGTGAAGAAGTATTGGCGTTAGAAGGGC
GGTTCAATCCAACACCGCCCACAAAAGAAATGGCGGCGCACGATGAAGAA
AATGTGAAATCAAGACGCTCAAAAGTACAACGATCAAAAGATAACGATTC
ATCTTTGGCAGACCTTCCACCTTCTGGTCGAAAATCAAACACACGAAATG
AAAACAGAAAGAAACGAAAACCAAGGAGTACAGTATTCCAATCGGCGGAT
GAAGAGAATTATCAAGGAGACTGTGATGATGAGATATCAGAATATTTTCC
TGTTGACAAAGAAGATATAATCCATAATACAGAGTTGAGTCAAAGCGCAT
CACGAATCAATAATGTCATTGCACCTCAAGCTCTGCCTAGTCAACCCAAC
GACATTCTGTTCATCGAGAAGAAAG

Run BLAST on NCBI

protein sequence of TCONS_00066773-protein

>TCONS_00066773-protein ID=TCONS_00066773-protein|Name=TCONS_00066773-protein|organism=Clytia hemisphaerica|type=polypeptide|length=241bp
MFGDESGGSQQELTGREKRNRRNRREEQNGIPANEGVHQKSKSRVRSSRD
RLSFDPPPYDKNDPNVVSRKKKQVRRRSDFVENNDEPPARSATKKQRTTP
HRLPRSVSEEVLALEGRFNPTPPTKEMAAHDEENVKSRRSKVQRSKDNDS
SLADLPPSGRKSNTRNENRKKRKPRSTVFQSADEENYQGDCDDEISEYFP
VDKEDIIHNTELSQSASRINNVIAPQALPSQPNDILFIEKK

Run BLAST on NCBI

transcript from alignment at scaffold_46:396967..399728+

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00066773 ID=TCONS_00066773|Name=TCONS_00066773|organism=Clytia hemisphaerica|type=transcript|length=2762bp|location=Sequence derived from alignment at scaffold_46:396967..399728+ (Clytia hemisphaerica)
AATGTTTGGTGATGAGTCAGGTAAGTTCATTCTCTTCTAATACAGCATCA
CAAACATTTTCTGGGATATGTGATagtttgatttatgatttactGAAATT
TGTAGCTTTGTAAGCAGTTTTTTTATCGTTTTATTGAAAATCCCATCTTC
TCGAAGCGAAATTCCCCAATCGCTGTTGTGACAATGATTCATCCATATCA
TCATCTCAAAAATTATAGATGCGTTATGcttaaaaaatttgttcaattgA
ATAAGTCttataaaatattaaaacactttttgtattttacatcatATACG
TCACTACCGTAAACTGTCATTACCGTAAATTTTGAATACCGTATTTAACT
AACAAACAATACTCTGTGTGCGTTTCATCAAAATATTCCCAGTTCAGAAA
ATCACGAGTTTATCACTACCAATgccaatttaatttttttgttaagaCCG
GATATGTAGTCACTGGGCAAAATTATATCGACTGAATACATGCAATAGAT
GTGTTGGACTTTAAACTTATTGTTTTTGTAAATTACCTAATGTGGATATA
AAAGCCTGGATATTCCCTGTGCCCAATCCTTTGATTGAACTGCTTGTATA
AATCGTTTTCTCCAATTTTAGTTAGTTATAAGAATATAAAGCTACGCGTA
CGTAAATATCTATAAACCTCTAGATGATGGATAGAAAATTGAAATACTTA
ATCTATCTATCATGTTGGTTGATCGAACCCTCTGTAGACATATGTATGAA
CCCCTGTTAATCGTTTTAAGTAGGATGCTTAACAACTGTCCAATTTTATA
TAGGAGGCTCACAACAAGAGTTGACAGGCCGTGAAAAACGAAACCGCAGA
AATAGACGCGAAGAACAAAATGGTATTCCTGCCAACGAAGGAGTGCATCA
AAAATCCAAATCACGCGTCCGCTCCAGTCGTGATCGCTTATCGTTCGACC
CTCCTCCGTACGATAAAAATGATCCGAATGTTGTTTCAAGAAAGAAGAAA
CAAGTACGCAGGAGGAGTGACTTCGGTAAGCATTCACTAACCGAATGAGT
TTCGTCAGTCCACCTAATGAATAGATGAATGAAGTATGAGGAGAATGATT
CTATAGAGGTTACCGCAAACTTTTACTACAATGATTTGCGGATCGGTAAA
GGTggtgaaaacatacaaaatATTAATCTTATTTCACAGTAGAAAACAAC
GATGAGCCTCCTGCTCGAAGCGCCACGAAGAAACAGCGTACAACTCCTCA
CCGCCTTCCACGTTCAGTCAGTGAAGAAGTATTGGCGTTAGAAGGGCGGT
TCAATCCAACACCGCCCACAAAAGAAATGGCGGCGCACGATGAAGAAAAT
GTGAAATCAAGACGCTCAAAAGTACAACGATCAAAAGGTTTGGACTTTTC
GATTGACAGCGTGCTTCATTCGAAGTAAAGCAAATCTTATGATTTATTTT
CCCGCTTTCTTCTCCCAATTTTTGGACTGATGTTTGGCTACGTTAATCAA
TAATAGACATGTGTTTTCAAGTTAAGTAAGTCTTAATGATAAACCCTATC
CGATCATTATTTTAGATAACGATTCATCTTTGGCAGACCTTCCACCTTCT
GGTCGAAAATCAAACACACGAAATGAAAACAGAAAGAAACGAAAACCAAG
GTTCGTGCTTCACATTGTTCATTGCGTCATTTCCTGCGGATGTTATCGAC
tacaaagattaaaaattatCGATTAcagagattaaatttcgcgagctaaa
aaaatcgcgaaattttctggatttaatttcgcgagtcagagttttgaaaa
atttcgcgtgaatttaatttcgcgaaaaagcctgaaaacagctgaaaaat
agccatttttttgCCACAAATGGAGACTTTGGACTGGTTTCTCCGCCGAA
AAtacgattttaaaagttttgtggtggatttgatttcgcgagtcaggaat
ctcacgcattttcgcgagttttaattttgcgaatatggcaaaaattcgcg
aaatcgtgaaatttaatctcgcaaaagttaatccgattaaagtatacGAA
AAAAACAATAACTCCCGTCTTTACATTTGCTCCTCTCTGATGAGACTACT
GGCATGTACAGTCTGTAATATTTTCTTCAACCTAATTATCCCCTTGTAAA
TTCCGAATTATATGGATgcaaggctcgaaataacgatttcaagtgggtcg
gacaaaatgtccgatcagggttgctttagcttgaaaattatgatttttgg
gtcggacatgaagctatgtgggtcggacaatgtccgatgtccgaccgtta
ttttgAGCCCTGATGGATGTAACTTTGAAGAGATAACTCATGCATTTCTT
CACAGGAGTACAGTATTCCAATCGGCGGATGAAGAGAATTATCAAGGAGA
CTGTGATGATGAGAGTAAGCCAATGATTTTTTAAGAATACTTTTATGAGC
CAAACTTGGTGAAAGCAACATCGTATAACAAACAAAGAAAAGGCAAAAAG
GAAGAATATGGAAACTTTCATGGAAGTCCTTGTGAACTCAGTCAAACCTC
GTtcttaaaaagttataattgcgttaaatttatgaaaataatgtAATTTA
TCTCTTCATTTCCTTTCTCAGTATCAGAATATTTTCCTGTTGACAAAGAA
GATATAATCCATAATACAGAGTTGAGTCAAAGCGCATCACGAATCAATAA
TGTCATTGCACCTCAAGCTCTGCCTAGTCAACCCAACGACATTCTGTTCA
TCGAGAAGAAAG

Coding sequence (CDS) from alignment at scaffold_46:396967..399728+

>TCONS_00066773 ID=TCONS_00066773|Name=TCONS_00066773|organism=Clytia hemisphaerica|type=CDS|length=4338bp|location=Sequence derived from alignment at scaffold_46:396967..399728+ (Clytia hemisphaerica)
ATGTTTGGTGATGAGTCAGGAGGCTCACAACAAGAGTTGACAGGCCGTGA
AAAACGAAACCGCAGAAATAGACGCGAAGAACAAAATGGTATTCCTGCCA
ACGAAGGAGTGCATCAAAAATCCAAATCACGCGTCCGCTCCAGTCGTGAT
CGCTTATCGTTCGACCCTCCTCCGTACGATAAAAATGATCCGAATGTTGT
TTCAAGAAAGAAGAAACAAGTACGCAGGAGGAGTGACTTCGTAGAAAACA
ACGATGAGCCTCCTGCTCGAAGCGCCACGAAGAAACAGCGTACAACTCCT
CACCGCCTTCCACGTTCAGTCAGTGAAGAAGTATTGGCGTTAGAAGGGCG
GTTCAATCCAACACCGCCCACAAAAGAAATGGCGGCGCACGATGAAGAAA
ATGTGAAATCAAGACGCTCAAAAGTACAACGATCAAAAGATAACGATTCA
TCTTTGGCAGACCTTCCACCTTCTGGTCGAAAATCAAACACACGAAATGA
AAACAGAAAGAAACGAAAACCAAGGAGTACAGTATTCCAATCGGCGGATG
AAGAGAATTATCAAGGAGACTGTGATGATGAGATATCAGAATATTTTCCT
GTTGACAAAGAAGATATAATCCATAATACAGAGTTGAGTCAAAGCGCATC
ACGAATCAATAATGTCATTGCACCTCAAGCTCTGCCTAGTCAACCCAACG
ACATTCTGTTCATCGAGAAGAAAATGTTTGGTGATGAGTCAGGAGGCTCA
CAACAAGAGTTGACAGGCCGTGAAAAACGAAACCGCAGAAATAGACGCGA
AGAACAAAATGGTATTCCTGCCAACGAAGGAGTGCATCAAAAATCCAAAT
CACGCGTCCGCTCCAGTCGTGATCGCTTATCGTTCGACCCTCCTCCGTAC
GATAAAAATGATCCGAATGTTGTTTCAAGAAAGAAGAAACAAGTACGCAG
GAGGAGTGACTTCGTAGAAAACAACGATGAGCCTCCTGCTCGAAGCGCCA
CGAAGAAACAGCGTACAACTCCTCACCGCCTTCCACGTTCAGTCAGTGAA
GAAGTATTGGCGTTAGAAGGGCGGTTCAATCCAACACCGCCCACAAAAGA
AATGGCGGCGCACGATGAAGAAAATGTGAAATCAAGACGCTCAAAAGTAC
AACGATCAAAAGATAACGATTCATCTTTGGCAGACCTTCCACCTTCTGGT
CGAAAATCAAACACACGAAATGAAAACAGAAAGAAACGAAAACCAAGGAG
TACAGTATTCCAATCGGCGGATGAAGAGAATTATCAAGGAGACTGTGATG
ATGAGATATCAGAATATTTTCCTGTTGACAAAGAAGATATAATCCATAAT
ACAGAGTTGAGTCAAAGCGCATCACGAATCAATAATGTCATTGCACCTCA
AGCTCTGCCTAGTCAACCCAACGACATTCTGTTCATCGAGAAGAAAATGT
TTGGTGATGAGTCAGGAGGCTCACAACAAGAGTTGACAGGCCGTGAAAAA
CGAAACCGCAGAAATAGACGCGAAGAACAAAATGGTATTCCTGCCAACGA
AGGAGTGCATCAAAAATCCAAATCACGCGTCCGCTCCAGTCGTGATCGCT
TATCGTTCGACCCTCCTCCGTACGATAAAAATGATCCGAATGTTGTTTCA
AGAAAGAAGAAACAAGTACGCAGGAGGAGTGACTTCGTAGAAAACAACGA
TGAGCCTCCTGCTCGAAGCGCCACGAAGAAACAGCGTACAACTCCTCACC
GCCTTCCACGTTCAGTCAGTGAAGAAGTATTGGCGTTAGAAGGGCGGTTC
AATCCAACACCGCCCACAAAAGAAATGGCGGCGCACGATGAAGAAAATGT
GAAATCAAGACGCTCAAAAGTACAACGATCAAAAGATAACGATTCATCTT
TGGCAGACCTTCCACCTTCTGGTCGAAAATCAAACACACGAAATGAAAAC
AGAAAGAAACGAAAACCAAGGAGTACAGTATTCCAATCGGCGGATGAAGA
GAATTATCAAGGAGACTGTGATGATGAGATATCAGAATATTTTCCTGTTG
ACAAAGAAGATATAATCCATAATACAGAGTTGAGTCAAAGCGCATCACGA
ATCAATAATGTCATTGCACCTCAAGCTCTGCCTAGTCAACCCAACGACAT
TCTGTTCATCGAGAAGAAAATGTTTGGTGATGAGTCAGGAGGCTCACAAC
AAGAGTTGACAGGCCGTGAAAAACGAAACCGCAGAAATAGACGCGAAGAA
CAAAATGGTATTCCTGCCAACGAAGGAGTGCATCAAAAATCCAAATCACG
CGTCCGCTCCAGTCGTGATCGCTTATCGTTCGACCCTCCTCCGTACGATA
AAAATGATCCGAATGTTGTTTCAAGAAAGAAGAAACAAGTACGCAGGAGG
AGTGACTTCGTAGAAAACAACGATGAGCCTCCTGCTCGAAGCGCCACGAA
GAAACAGCGTACAACTCCTCACCGCCTTCCACGTTCAGTCAGTGAAGAAG
TATTGGCGTTAGAAGGGCGGTTCAATCCAACACCGCCCACAAAAGAAATG
GCGGCGCACGATGAAGAAAATGTGAAATCAAGACGCTCAAAAGTACAACG
ATCAAAAGATAACGATTCATCTTTGGCAGACCTTCCACCTTCTGGTCGAA
AATCAAACACACGAAATGAAAACAGAAAGAAACGAAAACCAAGGAGTACA
GTATTCCAATCGGCGGATGAAGAGAATTATCAAGGAGACTGTGATGATGA
GATATCAGAATATTTTCCTGTTGACAAAGAAGATATAATCCATAATACAG
AGTTGAGTCAAAGCGCATCACGAATCAATAATGTCATTGCACCTCAAGCT
CTGCCTAGTCAACCCAACGACATTCTGTTCATCGAGAAGAAAATGTTTGG
TGATGAGTCAGGAGGCTCACAACAAGAGTTGACAGGCCGTGAAAAACGAA
ACCGCAGAAATAGACGCGAAGAACAAAATGGTATTCCTGCCAACGAAGGA
GTGCATCAAAAATCCAAATCACGCGTCCGCTCCAGTCGTGATCGCTTATC
GTTCGACCCTCCTCCGTACGATAAAAATGATCCGAATGTTGTTTCAAGAA
AGAAGAAACAAGTACGCAGGAGGAGTGACTTCGTAGAAAACAACGATGAG
CCTCCTGCTCGAAGCGCCACGAAGAAACAGCGTACAACTCCTCACCGCCT
TCCACGTTCAGTCAGTGAAGAAGTATTGGCGTTAGAAGGGCGGTTCAATC
CAACACCGCCCACAAAAGAAATGGCGGCGCACGATGAAGAAAATGTGAAA
TCAAGACGCTCAAAAGTACAACGATCAAAAGATAACGATTCATCTTTGGC
AGACCTTCCACCTTCTGGTCGAAAATCAAACACACGAAATGAAAACAGAA
AGAAACGAAAACCAAGGAGTACAGTATTCCAATCGGCGGATGAAGAGAAT
TATCAAGGAGACTGTGATGATGAGATATCAGAATATTTTCCTGTTGACAA
AGAAGATATAATCCATAATACAGAGTTGAGTCAAAGCGCATCACGAATCA
ATAATGTCATTGCACCTCAAGCTCTGCCTAGTCAACCCAACGACATTCTG
TTCATCGAGAAGAAAATGTTTGGTGATGAGTCAGGAGGCTCACAACAAGA
GTTGACAGGCCGTGAAAAACGAAACCGCAGAAATAGACGCGAAGAACAAA
ATGGTATTCCTGCCAACGAAGGAGTGCATCAAAAATCCAAATCACGCGTC
CGCTCCAGTCGTGATCGCTTATCGTTCGACCCTCCTCCGTACGATAAAAA
TGATCCGAATGTTGTTTCAAGAAAGAAGAAACAAGTACGCAGGAGGAGTG
ACTTCGTAGAAAACAACGATGAGCCTCCTGCTCGAAGCGCCACGAAGAAA
CAGCGTACAACTCCTCACCGCCTTCCACGTTCAGTCAGTGAAGAAGTATT
GGCGTTAGAAGGGCGGTTCAATCCAACACCGCCCACAAAAGAAATGGCGG
CGCACGATGAAGAAAATGTGAAATCAAGACGCTCAAAAGTACAACGATCA
AAAGATAACGATTCATCTTTGGCAGACCTTCCACCTTCTGGTCGAAAATC
AAACACACGAAATGAAAACAGAAAGAAACGAAAACCAAGGAGTACAGTAT
TCCAATCGGCGGATGAAGAGAATTATCAAGGAGACTGTGATGATGAGATA
TCAGAATATTTTCCTGTTGACAAAGAAGATATAATCCATAATACAGAGTT
GAGTCAAAGCGCATCACGAATCAATAATGTCATTGCACCTCAAGCTCTGC
CTAGTCAACCCAACGACATTCTGTTCATCGAGAAGAAA

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_041757	XLOC_041757	Clytia hemisphaerica	gene

The following polypeptide feature(s) derives from this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00066773-protein	TCONS_00066773-protein	Clytia hemisphaerica	polypeptide

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_46	supercontig	scaffold_46:396967..399728 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
12.7972	14.6302	1.1858	0.000969347	25.775	22.8402	18.3734	16.8739	11.017	21.1705	16.1659	13.1653	13.9747	14.7473	13.2837	14.9715	10.4631	11.3524	4.80249	5.25007	5.92864	5.79492	26.6873	24.702	24.615	22.8612	11.5961	10.2815	18.8897	23.2358

Blast

The following BLAST results are available for this feature:

BLAST of TCONS_00066773 vs. Swiss-Prot (Human)

BLAST of TCONS_00066773 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0


Match Name	E-value	Identity	Description

You are here

TCONS_00066773 (transcript) - C. hemisphaerica