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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00066770 ID=TCONS_00066770|Name=TCONS_00066770|organism=Clytia hemisphaerica|type=transcript|length=1689bp
TTCCAGCAAATAAACAACGGACGATGACCACGCGGTACGCATGGCAAGCT
CGCAATGAGCAAGAGCTCTCTTTCCAGGCTGGTCAAACGATAGTTGTGAA
GAACAGCGATGGTAAATGGTGGTTCGGTGAATGTAATGGAAAGgaggGAT
TCTTTCCAAGCAATTATGTGGAGTGAGGCTTTCGTtcttgagGTACTGGT
CAtgctttgttttgttgtttattgtgaataaagaaatttttctatttttg
tggaATCCACGTAATTAATTTTAGATAAAACATTGTTTAGTTCCTAGGCT
CCCTTGTTataatgattttcaaaattgaaaaatgttcgTCTAAAAATTTT
ACCAAATTATGGggaattttaacaaaaaatatttgaaatcaaGAAATTGC
AGCGTATCCGGAAGAAAATTAAATAGAAGGGGCGGATAACTTTTATagct
tggaaatttcaaggattaaaattaaaatgcaTCCTAAAATCAGACTTTTT
TCACAAGAGAGGTATCAAGTATACTGTATACTTTTCCTGATACACTGTGT
TTCTTTTGTAATGAAACCCAGAGTCTAgctgtttgaaatatttgactTCC
AGATTCTTTATATTGTAATGTGTAAAAACACTAGATCTTTTTGCCTAACC
AAATATTCTCCAAATTCACAATATTGGGGCTTGTTATTTTTAAGGCAACA
GTACAACGCGAGAATCTATATCTAGAGATTTCAAATTAGAAAATAGTTAA
GGCTGGTCTCTATTTTctcgcgaaatgggcgacagtttttttcttaacct
tttttgcccgaagaaaagattacgtcataaaaaagtttcacgcgttgaag
gaagttctacttttttcatccgttgcgtcaatttcgaccaatggaattgc
ttcatttttcaaccaatggccttacaaaaacgtcaaaaggttttcgctca
tttcgcgcgaaagtggccGCCTTTGGGCATAAAAATATGaaagttttaaa
caaaaacctAGGAAAATTTTACAAGAGAGCAAACAATTTCAAACCATCTC
ACCATATTTTAATTTGGAATATACGTTATATTTAATCCCCAAAATTGATA
AAGGGAAAGTTAAAGGGTAAAGTCAATATTATGGGGTCTAACGAAAATAT
AGATTTACAATAgaaatttaaaacgaaactatttttacatggtttttttt
tttcgttaaacaattaaataattttctacCAACTGTAGCTCGATACAACT
TTTTTTTCCATAATGttctaatttcaaaatattattgaaatctCCTTTTG
TAACTAgaatttttcgtatttttttcgCGACATTAtgatttagttttttt
aattattgttATAATATTCTGATGATTCAATTATATAATTTCGATAAATT
TTCACCACAGTAGAATTTTAtgtaatttttaacaaaaatgccATGCCTTT
TCTTCGCCTAAACATGAAGTCAATTGAACCAAAAATGACAACATCCCTGT
TCACAATTTTCTATAAATTCTGAAACTGATTTTTATGAAAACGTTTGTTC
TTCTGATATACTTATGCCACTttcagaccatgttcgcacgtgatgGTTCC
GCTTCGCTCCGAAacggaatgaagccattctattggttagaagtgacgta
acacttgaatgtaaccaatagaatggcttcatttcgttt Run BLAST on NCBI transcript from alignment at scaffold_46:356218..358964+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00066770 ID=TCONS_00066770|Name=TCONS_00066770|organism=Clytia hemisphaerica|type=transcript|length=2747bp|location=Sequence derived from alignment at scaffold_46:356218..358964+ (Clytia hemisphaerica)
TTCCAGCAAATAAACAACGGACGATGACCACGCGGTACGCATGGCAAGCT
CGCAATGAGCAAGAGCTCTCTTTCCAGGTAAGTTTTCGTTAGAGATTCTG
AACCTTTTTAATTATACCGTAGCTTTCATATGTTATTATAAAAGTTTTGG
ACATCATCAGCTTACCTACTTACAGAACTTTGGGTGTAAGAAAACTAAAA
TGTACATTTTTTGATATATTAATTTCGCTATTTCTAAAGCTCCGACTACC
GTCTTTAGAcaccaaatttcatttttaactttCTCAAGTTAATGGTAATT
TCAATTCCAGCCAGCCTTAATTCTATTCAGTGTTTGGTCCTACAGTAGCT
ATCAAAGTCATCATCTTGTTTATTCTTCAGGCTGGTCAAACGATAGTTGT
GAAGAACAGCGATGGTAAATGGTGGTTCGGTGAATGTAATGGAAAGGTAG
GCATGCTTTAGCTTAATCGCGCCTCCCAGATTTCACTCTAAACTTCTGAC
TGTTGTTGTAAGAAAGgtttcaacaaaagtttttattaTTTCTGGAAAAA
ACCATATAAATGTAGTAATGCCATTTGAAAAGGCGCAAATAGAAAACGAT
GTGGTATTTTGCCGGATTTGAAGCACTTaacctatttttatttttaggag
gGATTCTTTCCAAGCAATTATGTGGAGTGAGGCTTTCGTtcttgaggtaa
aatttgatttcaaactACGTATAGTCCTACATTTCTTTTAGCTAGAAAAT
ACATTTTCCAGCCTTAACATGAATGACAATGAAAGTATGTTTATCAATTG
TATTAAATGTCATTTGTCAATTGAGTTGGCTCGATTTTAGTCTTGTTGTA
TGGTACTTGTATTCTTCGCACTTCTCAGAGCttataaaataacaattgaa
agCTCTTAAATTACCAAATGCCTTCTAAatggggagtttctaaacatcga
ccatgaccggcgaccacgaccagcgaccagataaatttgggttatcgagt
ttttttccttttctccaacgtagagtgtctctCCTTATCATTTGAATATA
TCATATTGAAGAGAAGCTCACCTCTATCTCATCTATTTAGAgcacttttt
agtattctgaggacttgatttagacattctctacggtggagagagcagat
aacCTCGATAACCCAATTTTATcaggtcgctggtcgtggtcgccatttct
agtcgatgtttagaaacttcCCTCTTAATGATTTTCCTATCTTTTTTTAG
GTACTGGTCAtgctttgttttgttgtttattgtgaataaagaaatttttc
tatttttgtggaATCCACGTAATTAATTTTAGATAAAACATTGTTTAGTT
CCTAGGCTCCCTTGTTataatgattttcaaaattgaaaaatgttcgTCTA
AAAATTTTACCAAATTATGGggaattttaacaaaaaatatttgaaatcaa
GAAATTGCAGCGTATCCGGAAGAAAATTAAATAGAAGGGGCGGATAACTT
TTATagcttggaaatttcaaggattaaaattaaaatgcaTCCTAAAATCA
GACTTTTTTCACAAGAGAGGTATCAAGTATACTGTATACTTTTCCTGATA
CACTGTGTTTCTTTTGTAATGAAACCCAGAGTCTAgctgtttgaaatatt
tgactTCCAGATTCTTTATATTGTAATGTGTAAAAACACTAGATCTTTTT
GCCTAACCAAATATTCTCCAAATTCACAATATTGGGGCTTGTTATTTTTA
AGGCAACAGTACAACGCGAGAATCTATATCTAGAGATTTCAAATTAGAAA
ATAGTTAAGGCTGGTCTCTATTTTctcgcgaaatgggcgacagttttttt
cttaaccttttttgcccgaagaaaagattacgtcataaaaaagtttcacg
cgttgaaggaagttctacttttttcatccgttgcgtcaatttcgaccaat
ggaattgcttcatttttcaaccaatggccttacaaaaacgtcaaaaggtt
ttcgctcatttcgcgcgaaagtggccGCCTTTGGGCATAAAAATATGaaa
gttttaaacaaaaacctAGGAAAATTTTACAAGAGAGCAAACAATTTCAA
ACCATCTCACCATATTTTAATTTGGAATATACGTTATATTTAATCCCCAA
AATTGATAAAGGGAAAGTTAAAGGGTAAAGTCAATATTATGGGGTCTAAC
GAAAATATAGATTTACAATAgaaatttaaaacgaaactatttttacatgg
tttttttttttcgttaaacaattaaataattttctacCAACTGTAGCTCG
ATACAACTTTTTTTTCCATAATGttctaatttcaaaatattattgaaatc
tCCTTTTGTAACTAgaatttttcgtatttttttcgCGACATTAtgattta
gtttttttaattattgttATAATATTCTGATGATTCAATTATATAATTTC
GATAAATTTTCACCACAGTAGAATTTTAtgtaatttttaacaaaaatgcc
ATGCCTTTTCTTCGCCTAAACATGAAGTCAATTGAACCAAAAATGACAAC
ATCCCTGTTCACAATTTTCTATAAATTCTGAAACTGATTTTTATGAAAAC
GTTTGTTCTTCTGATATACTTATGCCACTttcagaccatgttcgcacgtg
atgGTTCCGCTTCGCTCCGAAacggaatgaagccattctattggttagaa
gtgacgtaacacttgaatgtaaccaatagaatggcttcatttcgttt
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00066770-exon-scaffold_46-1491911889:356218..356294 | TCONS_00066770-exon-scaffold_46-1491911889:356218..356294 | Clytia hemisphaerica | exon |
| TCONS_00066770-exon-scaffold_46-1510915933:356218..356294 | TCONS_00066770-exon-scaffold_46-1510915933:356218..356294 | Clytia hemisphaerica | exon |
| TCONS_00066770-exon-scaffold_46-1575043694:356218..356294 | TCONS_00066770-exon-scaffold_46-1575043694:356218..356294 | Clytia hemisphaerica | exon |
| TCONS_00066770-exon-scaffold_46-1491911889:356598..356663 | TCONS_00066770-exon-scaffold_46-1491911889:356598..356663 | Clytia hemisphaerica | exon |
| TCONS_00066770-exon-scaffold_46-1510915933:356598..356663 | TCONS_00066770-exon-scaffold_46-1510915933:356598..356663 | Clytia hemisphaerica | exon |
| TCONS_00066770-exon-scaffold_46-1575043694:356598..356663 | TCONS_00066770-exon-scaffold_46-1575043694:356598..356663 | Clytia hemisphaerica | exon |
| TCONS_00066770-exon-scaffold_46-1491911889:356865..356913 | TCONS_00066770-exon-scaffold_46-1491911889:356865..356913 | Clytia hemisphaerica | exon |
| TCONS_00066770-exon-scaffold_46-1510915933:356865..356913 | TCONS_00066770-exon-scaffold_46-1510915933:356865..356913 | Clytia hemisphaerica | exon |
| TCONS_00066770-exon-scaffold_46-1575043694:356865..356913 | TCONS_00066770-exon-scaffold_46-1575043694:356865..356913 | Clytia hemisphaerica | exon |
| TCONS_00066770-exon-scaffold_46-1491911889:357468..358964 | TCONS_00066770-exon-scaffold_46-1491911889:357468..358964 | Clytia hemisphaerica | exon |
| TCONS_00066770-exon-scaffold_46-1510915933:357468..358964 | TCONS_00066770-exon-scaffold_46-1510915933:357468..358964 | Clytia hemisphaerica | exon |
| TCONS_00066770-exon-scaffold_46-1575043694:357468..358964 | TCONS_00066770-exon-scaffold_46-1575043694:357468..358964 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_46 | supercontig | scaffold_46:356218..358964 + |
Blast
The following BLAST results are available for this feature:
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