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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00066770 ID=TCONS_00066770|Name=TCONS_00066770|organism=Clytia hemisphaerica|type=transcript|length=1689bp TTCCAGCAAATAAACAACGGACGATGACCACGCGGTACGCATGGCAAGCT CGCAATGAGCAAGAGCTCTCTTTCCAGGCTGGTCAAACGATAGTTGTGAA GAACAGCGATGGTAAATGGTGGTTCGGTGAATGTAATGGAAAGgaggGAT TCTTTCCAAGCAATTATGTGGAGTGAGGCTTTCGTtcttgagGTACTGGT CAtgctttgttttgttgtttattgtgaataaagaaatttttctatttttg tggaATCCACGTAATTAATTTTAGATAAAACATTGTTTAGTTCCTAGGCT CCCTTGTTataatgattttcaaaattgaaaaatgttcgTCTAAAAATTTT ACCAAATTATGGggaattttaacaaaaaatatttgaaatcaaGAAATTGC AGCGTATCCGGAAGAAAATTAAATAGAAGGGGCGGATAACTTTTATagct tggaaatttcaaggattaaaattaaaatgcaTCCTAAAATCAGACTTTTT TCACAAGAGAGGTATCAAGTATACTGTATACTTTTCCTGATACACTGTGT TTCTTTTGTAATGAAACCCAGAGTCTAgctgtttgaaatatttgactTCC AGATTCTTTATATTGTAATGTGTAAAAACACTAGATCTTTTTGCCTAACC AAATATTCTCCAAATTCACAATATTGGGGCTTGTTATTTTTAAGGCAACA GTACAACGCGAGAATCTATATCTAGAGATTTCAAATTAGAAAATAGTTAA GGCTGGTCTCTATTTTctcgcgaaatgggcgacagtttttttcttaacct tttttgcccgaagaaaagattacgtcataaaaaagtttcacgcgttgaag gaagttctacttttttcatccgttgcgtcaatttcgaccaatggaattgc ttcatttttcaaccaatggccttacaaaaacgtcaaaaggttttcgctca tttcgcgcgaaagtggccGCCTTTGGGCATAAAAATATGaaagttttaaa caaaaacctAGGAAAATTTTACAAGAGAGCAAACAATTTCAAACCATCTC ACCATATTTTAATTTGGAATATACGTTATATTTAATCCCCAAAATTGATA AAGGGAAAGTTAAAGGGTAAAGTCAATATTATGGGGTCTAACGAAAATAT AGATTTACAATAgaaatttaaaacgaaactatttttacatggtttttttt tttcgttaaacaattaaataattttctacCAACTGTAGCTCGATACAACT TTTTTTTCCATAATGttctaatttcaaaatattattgaaatctCCTTTTG TAACTAgaatttttcgtatttttttcgCGACATTAtgatttagttttttt aattattgttATAATATTCTGATGATTCAATTATATAATTTCGATAAATT TTCACCACAGTAGAATTTTAtgtaatttttaacaaaaatgccATGCCTTT TCTTCGCCTAAACATGAAGTCAATTGAACCAAAAATGACAACATCCCTGT TCACAATTTTCTATAAATTCTGAAACTGATTTTTATGAAAACGTTTGTTC TTCTGATATACTTATGCCACTttcagaccatgttcgcacgtgatgGTTCC GCTTCGCTCCGAAacggaatgaagccattctattggttagaagtgacgta acacttgaatgtaaccaatagaatggcttcatttcgttt Run BLAST on NCBI transcript from alignment at scaffold_46:356218..358964+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00066770 ID=TCONS_00066770|Name=TCONS_00066770|organism=Clytia hemisphaerica|type=transcript|length=2747bp|location=Sequence derived from alignment at scaffold_46:356218..358964+ (Clytia hemisphaerica) TTCCAGCAAATAAACAACGGACGATGACCACGCGGTACGCATGGCAAGCT
CGCAATGAGCAAGAGCTCTCTTTCCAGGTAAGTTTTCGTTAGAGATTCTG
AACCTTTTTAATTATACCGTAGCTTTCATATGTTATTATAAAAGTTTTGG
ACATCATCAGCTTACCTACTTACAGAACTTTGGGTGTAAGAAAACTAAAA
TGTACATTTTTTGATATATTAATTTCGCTATTTCTAAAGCTCCGACTACC
GTCTTTAGAcaccaaatttcatttttaactttCTCAAGTTAATGGTAATT
TCAATTCCAGCCAGCCTTAATTCTATTCAGTGTTTGGTCCTACAGTAGCT
ATCAAAGTCATCATCTTGTTTATTCTTCAGGCTGGTCAAACGATAGTTGT
GAAGAACAGCGATGGTAAATGGTGGTTCGGTGAATGTAATGGAAAGGTAG
GCATGCTTTAGCTTAATCGCGCCTCCCAGATTTCACTCTAAACTTCTGAC
TGTTGTTGTAAGAAAGgtttcaacaaaagtttttattaTTTCTGGAAAAA
ACCATATAAATGTAGTAATGCCATTTGAAAAGGCGCAAATAGAAAACGAT
GTGGTATTTTGCCGGATTTGAAGCACTTaacctatttttatttttaggag
gGATTCTTTCCAAGCAATTATGTGGAGTGAGGCTTTCGTtcttgaggtaa
aatttgatttcaaactACGTATAGTCCTACATTTCTTTTAGCTAGAAAAT
ACATTTTCCAGCCTTAACATGAATGACAATGAAAGTATGTTTATCAATTG
TATTAAATGTCATTTGTCAATTGAGTTGGCTCGATTTTAGTCTTGTTGTA
TGGTACTTGTATTCTTCGCACTTCTCAGAGCttataaaataacaattgaa
agCTCTTAAATTACCAAATGCCTTCTAAatggggagtttctaaacatcga
ccatgaccggcgaccacgaccagcgaccagataaatttgggttatcgagt
ttttttccttttctccaacgtagagtgtctctCCTTATCATTTGAATATA
TCATATTGAAGAGAAGCTCACCTCTATCTCATCTATTTAGAgcacttttt
agtattctgaggacttgatttagacattctctacggtggagagagcagat
aacCTCGATAACCCAATTTTATcaggtcgctggtcgtggtcgccatttct
agtcgatgtttagaaacttcCCTCTTAATGATTTTCCTATCTTTTTTTAG
GTACTGGTCAtgctttgttttgttgtttattgtgaataaagaaatttttc
tatttttgtggaATCCACGTAATTAATTTTAGATAAAACATTGTTTAGTT
CCTAGGCTCCCTTGTTataatgattttcaaaattgaaaaatgttcgTCTA
AAAATTTTACCAAATTATGGggaattttaacaaaaaatatttgaaatcaa
GAAATTGCAGCGTATCCGGAAGAAAATTAAATAGAAGGGGCGGATAACTT
TTATagcttggaaatttcaaggattaaaattaaaatgcaTCCTAAAATCA
GACTTTTTTCACAAGAGAGGTATCAAGTATACTGTATACTTTTCCTGATA
CACTGTGTTTCTTTTGTAATGAAACCCAGAGTCTAgctgtttgaaatatt
tgactTCCAGATTCTTTATATTGTAATGTGTAAAAACACTAGATCTTTTT
GCCTAACCAAATATTCTCCAAATTCACAATATTGGGGCTTGTTATTTTTA
AGGCAACAGTACAACGCGAGAATCTATATCTAGAGATTTCAAATTAGAAA
ATAGTTAAGGCTGGTCTCTATTTTctcgcgaaatgggcgacagttttttt
cttaaccttttttgcccgaagaaaagattacgtcataaaaaagtttcacg
cgttgaaggaagttctacttttttcatccgttgcgtcaatttcgaccaat
ggaattgcttcatttttcaaccaatggccttacaaaaacgtcaaaaggtt
ttcgctcatttcgcgcgaaagtggccGCCTTTGGGCATAAAAATATGaaa
gttttaaacaaaaacctAGGAAAATTTTACAAGAGAGCAAACAATTTCAA
ACCATCTCACCATATTTTAATTTGGAATATACGTTATATTTAATCCCCAA
AATTGATAAAGGGAAAGTTAAAGGGTAAAGTCAATATTATGGGGTCTAAC
GAAAATATAGATTTACAATAgaaatttaaaacgaaactatttttacatgg
tttttttttttcgttaaacaattaaataattttctacCAACTGTAGCTCG
ATACAACTTTTTTTTCCATAATGttctaatttcaaaatattattgaaatc
tCCTTTTGTAACTAgaatttttcgtatttttttcgCGACATTAtgattta
gtttttttaattattgttATAATATTCTGATGATTCAATTATATAATTTC
GATAAATTTTCACCACAGTAGAATTTTAtgtaatttttaacaaaaatgcc
ATGCCTTTTCTTCGCCTAAACATGAAGTCAATTGAACCAAAAATGACAAC
ATCCCTGTTCACAATTTTCTATAAATTCTGAAACTGATTTTTATGAAAAC
GTTTGTTCTTCTGATATACTTATGCCACTttcagaccatgttcgcacgtg
atgGTTCCGCTTCGCTCCGAAacggaatgaagccattctattggttagaa
gtgacgtaacacttgaatgtaaccaatagaatggcttcatttcgttt
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00066770-exon-scaffold_46-1491911889:356218..356294 | TCONS_00066770-exon-scaffold_46-1491911889:356218..356294 | Clytia hemisphaerica | exon |
TCONS_00066770-exon-scaffold_46-1510915933:356218..356294 | TCONS_00066770-exon-scaffold_46-1510915933:356218..356294 | Clytia hemisphaerica | exon |
TCONS_00066770-exon-scaffold_46-1575043694:356218..356294 | TCONS_00066770-exon-scaffold_46-1575043694:356218..356294 | Clytia hemisphaerica | exon |
TCONS_00066770-exon-scaffold_46-1491911889:356598..356663 | TCONS_00066770-exon-scaffold_46-1491911889:356598..356663 | Clytia hemisphaerica | exon |
TCONS_00066770-exon-scaffold_46-1510915933:356598..356663 | TCONS_00066770-exon-scaffold_46-1510915933:356598..356663 | Clytia hemisphaerica | exon |
TCONS_00066770-exon-scaffold_46-1575043694:356598..356663 | TCONS_00066770-exon-scaffold_46-1575043694:356598..356663 | Clytia hemisphaerica | exon |
TCONS_00066770-exon-scaffold_46-1491911889:356865..356913 | TCONS_00066770-exon-scaffold_46-1491911889:356865..356913 | Clytia hemisphaerica | exon |
TCONS_00066770-exon-scaffold_46-1510915933:356865..356913 | TCONS_00066770-exon-scaffold_46-1510915933:356865..356913 | Clytia hemisphaerica | exon |
TCONS_00066770-exon-scaffold_46-1575043694:356865..356913 | TCONS_00066770-exon-scaffold_46-1575043694:356865..356913 | Clytia hemisphaerica | exon |
TCONS_00066770-exon-scaffold_46-1491911889:357468..358964 | TCONS_00066770-exon-scaffold_46-1491911889:357468..358964 | Clytia hemisphaerica | exon |
TCONS_00066770-exon-scaffold_46-1510915933:357468..358964 | TCONS_00066770-exon-scaffold_46-1510915933:357468..358964 | Clytia hemisphaerica | exon |
TCONS_00066770-exon-scaffold_46-1575043694:357468..358964 | TCONS_00066770-exon-scaffold_46-1575043694:357468..358964 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
scaffold_46 | supercontig | scaffold_46:356218..358964 + |
Blast
The following BLAST results are available for this feature:
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