TCONS_00066767 (transcript) - C. hemisphaerica

Overview
NameTCONS_00066767
Unique NameTCONS_00066767
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length666

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00066767 ID=TCONS_00066767|Name=TCONS_00066767|organism=Clytia hemisphaerica|type=transcript|length=666bp
taacattggcaagttagtgcagaaacaatttgtagtcatgtgctacctaa
attgtgcagactattACCTAAACctggctaccttaatggagcggcccgTT
TGCTTCTGCATAAAAACCTTGAATactattttggaatttttttctgattt
aagCCATATATATCGATCGAAATCAAAGcagtttatatttttttaaggga
aaatgAAGTGCGAGCCCGGACCGGAAGGGAAACGTCATTTACTCTACAAG
TCTTCTTCAAAAGGAGACCGATCAACCGAAggcaaaaaagaaagaattgt
tTGCCTGAGATGCCAAGGTTAATGGTAGAAGTTAGGACATGGAAATGGTT
TATCGTttaatcAGAGAGGTAGGGCGCATTCTTcatcaagaaacaaaaat
gtttACACAAGAGGTCATCAAAAGGCTCTCAGTACAAACCGATTCGCTCC
TCCCCTACGTATATACGAAGTTCAACACCAACAAATCGCTAATCGAAACA
TTGCATAATCCAAACTTCAATATTTCATgGACCAAGCTGGTATCTATCCT
TTCCGTCATCGATGTTCTATTTGAtgggaagaaaaagaagaaatctaTCG
TTCAACTGATCCATGACGAGGATGACCCCAACATTAAACgaaaactactg
ttgccagaGTTACCGG
Run BLAST on NCBI

protein sequence of TCONS_00066767-protein

>TCONS_00066767-protein ID=TCONS_00066767-protein|Name=TCONS_00066767-protein|organism=Clytia hemisphaerica|type=polypeptide|length=109bp
MEMVYRLIREVGRILHQETKMFTQEVIKRLSVQTDSLLPYVYTKFNTNKS
LIETLHNPNFNISWTKLVSILSVIDVLFDGKKKKKSIVQLIHDEDDPNIK
RKLLLPELP
Run BLAST on NCBI

transcript from alignment at scaffold_46:326990..328538+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00066767 ID=TCONS_00066767|Name=TCONS_00066767|organism=Clytia hemisphaerica|type=transcript|length=1549bp|location=Sequence derived from alignment at scaffold_46:326990..328538+ (Clytia hemisphaerica)
taacattggcaagttagtgcagaaacaatttgtagtcatgtgctacctaa
attgtgcagactattACCTAAACctggctaccttaatggagcggcccgTT
TGCTTCTGCATAAAAACCTTGAATactattttggaatttttttctgattt
aagCCATATATATCGATCGAAATCAAAGcagtttatatttttttaaggga
aaatgAAGTGCGAGCCCGGACCGGAAGGGAAACGTCATTTACTCTACAAG
TCTTCTTCAAAAGGTGAGAATATTTCTGTAATTATTTATCCAGCACCTTC
AATATTTGTCTTCGTTACTCCAAGTACAGAATCTCTTCAGAGTCATTTAG
CAAACGTAGGTGAAAAGAAGCACTTACTTATCTTGAGCTATGTTGGCTTG
TGAAGTCTaatatattatttattatttcctTTTCTACAGGAGACCGATCA
ACCGAAggcaaaaaagaaagaattgttTGCCTGAGATGCCAAGGTTAATG
GTAGAAGTTAGGACATGGAAATGGTTTATCGTGTACGGTAGCAATATTTT
TACGGTAGAGCCGCTTCCACTCGGTTTAATGGTTATGTTTCACTTGCTCC
ATGAAGACTATCTAACAGACAGAGCTGATTACCTGCATGCATGACAATCT
AGCATCGTCTTCAAAGACGCTTGTTGTATAGATTCTCATTACGAAAGCTT
TAATAATGCAGTAAAATGACTTCAGAATTTCTACCCATCGATTTCGACAC
TCCTATGTCAGAGAGCCTTTctcttaaaatcaaaacaatgacttTCCATA
ATTTACCACATAATATTCAATCCAATGTCatccattttatttttagttaa
tcAGAGAGGTAGGGCGCATTCTTcatcaagaaacaaaaatgtttACACAA
GAGGTCATCAAAAGGCTCTCAGTACAAACCGATTCGCTCCTCCCCTACGT
ATATACGAAGTTCAACACCAACAAATCGCTAATCGAAACATTGCATAATC
CAAACTTCAATATTTCATGTAAGTATTTCCGACTTTGTTGCTTTGTCACC
GTGAACTGAGTTTTAAAGGGTATTTCTGAAAACTTAGGGGTCTTATTCGA
AAATTAGTTCTGCCTCCTTGCTTTTTgttaattaatttattttgattatt
tctaggGACCAAGCTGGTATCTATCCTTTCCGTCATCGATGTTCTATTTG
AtgggaagaaaaagaagaaatctaTCGTTCAACTGATCCATGTAAGTATA
TTTTCAATTCCGTCACAAAACATTTTTATCGAAATTATGCATAGGGAAAG
AACACTATACTAACGAAAACAGTGTATGGAAAATATTTACATTAATTCTT
CTCTGATCATACCTGTTTGCTCATGCTCTCCGAATAGGATGTTTCCGATA
GGATGGTGAATGAGTGCTTTGACCTTTTTGCGTATACGTTCATAAAATGC
CTTGATGATATATACTATTCTATTATCTGTCGTATCCATTTTTACAGGAC
GAGGATGACCCCAACATTAAACgaaaactactgttgccagaGTTACCGG

Coding sequence (CDS) from alignment at scaffold_46:326990..328538+

>TCONS_00066767 ID=TCONS_00066767|Name=TCONS_00066767|organism=Clytia hemisphaerica|type=CDS|length=1308bp|location=Sequence derived from alignment at scaffold_46:326990..328538+ (Clytia hemisphaerica)
ATGGAAATGGTTTATCGTttaatcAGAGAGGTAGGGCGCATTCTTcatca
agaaacaaaaatgtttACACAAGAGGTCATCAAAAGGCTCTCAGTACAAA
CCGATTCGCTCCTCCCCTACGTATATACGAAGTTCAACACCAACAAATCG
CTAATCGAAACATTGCATAATCCAAACTTCAATATTTCATgGACCAAGCT
GGTATCTATCCTTTCCGTCATCGATGTTCTATTTGAtgggaagaaaaaga
agaaatctaTCGTTCAACTGATCCATGACGAGGATGACCCCAACATTAAA
CgaaaactactgttgccagaGTTACCGATGGAAATGGTTTATCGTttaat
cAGAGAGGTAGGGCGCATTCTTcatcaagaaacaaaaatgtttACACAAG
AGGTCATCAAAAGGCTCTCAGTACAAACCGATTCGCTCCTCCCCTACGTA
TATACGAAGTTCAACACCAACAAATCGCTAATCGAAACATTGCATAATCC
AAACTTCAATATTTCATgGACCAAGCTGGTATCTATCCTTTCCGTCATCG
ATGTTCTATTTGAtgggaagaaaaagaagaaatctaTCGTTCAACTGATC
CATGACGAGGATGACCCCAACATTAAACgaaaactactgttgccagaGTT
ACCGATGGAAATGGTTTATCGTttaatcAGAGAGGTAGGGCGCATTCTTc
atcaagaaacaaaaatgtttACACAAGAGGTCATCAAAAGGCTCTCAGTA
CAAACCGATTCGCTCCTCCCCTACGTATATACGAAGTTCAACACCAACAA
ATCGCTAATCGAAACATTGCATAATCCAAACTTCAATATTTCATgGACCA
AGCTGGTATCTATCCTTTCCGTCATCGATGTTCTATTTGAtgggaagaaa
aagaagaaatctaTCGTTCAACTGATCCATGACGAGGATGACCCCAACAT
TAAACgaaaactactgttgccagaGTTACCGATGGAAATGGTTTATCGTt
taatcAGAGAGGTAGGGCGCATTCTTcatcaagaaacaaaaatgtttACA
CAAGAGGTCATCAAAAGGCTCTCAGTACAAACCGATTCGCTCCTCCCCTA
CGTATATACGAAGTTCAACACCAACAAATCGCTAATCGAAACATTGCATA
ATCCAAACTTCAATATTTCATgGACCAAGCTGGTATCTATCCTTTCCGTC
ATCGATGTTCTATTTGAtgggaagaaaaagaagaaatctaTCGTTCAACT
GATCCATGACGAGGATGACCCCAACATTAAACgaaaactactgttgccag
aGTTACCG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_041753XLOC_041753Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00066767-exon-scaffold_46-1491911889:326990..327252TCONS_00066767-exon-scaffold_46-1491911889:326990..327252Clytia hemisphaericaexon
TCONS_00066767-exon-scaffold_46-1510915933:326990..327252TCONS_00066767-exon-scaffold_46-1510915933:326990..327252Clytia hemisphaericaexon
TCONS_00066767-exon-scaffold_46-1575043694:326990..327252TCONS_00066767-exon-scaffold_46-1575043694:326990..327252Clytia hemisphaericaexon
TCONS_00066767-exon-scaffold_46-1491911889:327429..327521TCONS_00066767-exon-scaffold_46-1491911889:327429..327521Clytia hemisphaericaexon
TCONS_00066767-exon-scaffold_46-1510915933:327429..327521TCONS_00066767-exon-scaffold_46-1510915933:327429..327521Clytia hemisphaericaexon
TCONS_00066767-exon-scaffold_46-1575043694:327429..327521TCONS_00066767-exon-scaffold_46-1575043694:327429..327521Clytia hemisphaericaexon
TCONS_00066767-exon-scaffold_46-1491911889:327836..328007TCONS_00066767-exon-scaffold_46-1491911889:327836..328007Clytia hemisphaericaexon
TCONS_00066767-exon-scaffold_46-1510915933:327836..328007TCONS_00066767-exon-scaffold_46-1510915933:327836..328007Clytia hemisphaericaexon
TCONS_00066767-exon-scaffold_46-1575043694:327836..328007TCONS_00066767-exon-scaffold_46-1575043694:327836..328007Clytia hemisphaericaexon
TCONS_00066767-exon-scaffold_46-1491911889:328145..328230TCONS_00066767-exon-scaffold_46-1491911889:328145..328230Clytia hemisphaericaexon
TCONS_00066767-exon-scaffold_46-1510915933:328145..328230TCONS_00066767-exon-scaffold_46-1510915933:328145..328230Clytia hemisphaericaexon
TCONS_00066767-exon-scaffold_46-1575043694:328145..328230TCONS_00066767-exon-scaffold_46-1575043694:328145..328230Clytia hemisphaericaexon
TCONS_00066767-exon-scaffold_46-1491911889:328487..328538TCONS_00066767-exon-scaffold_46-1491911889:328487..328538Clytia hemisphaericaexon
TCONS_00066767-exon-scaffold_46-1510915933:328487..328538TCONS_00066767-exon-scaffold_46-1510915933:328487..328538Clytia hemisphaericaexon
TCONS_00066767-exon-scaffold_46-1575043694:328487..328538TCONS_00066767-exon-scaffold_46-1575043694:328487..328538Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00066767-proteinTCONS_00066767-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_46supercontigscaffold_46:326990..328538 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.470463	0.458184	0.0878987	0.234818	0.640079	0.2399	2.79023	1.99337	3.00715	3.77289	7.02824	5.30734	7.01984	8.35708	5.3204	4.36673	8.14624	11.2776	1.66605	1.31409	10.3081	9.0602	2.36676	5.04042	8.72519	7.48448	1.99835	2.67052	3.62624	3.98536
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00066767 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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