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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00066736 ID=TCONS_00066736|Name=TCONS_00066736|organism=Clytia hemisphaerica|type=transcript|length=1235bp
ggaaaagtgacaagaatcttagtgtggAAACTTATAAGAAATAACAGTAC
TCTTTAGGTGCCTTTATAAATGccccctgcttgttaatttttcaatcttt
ttcctaCCCCCTGGACCTTATTTTGACCCaacatttattaatttttgaag
agTCCCTTACAGTATTTTGCTCAACTACCTTACTTTAGGGGTATTAGAAG
TATGATTTCCAACCTTTTTGGATGACCATCAATAATATGTTCCATTTGAT
tcataaaacatcttcaaattcAGTCATTCAGTTGACCGGTACTGTCAATT
GGGGTTACTTTCATAAGTGAGAGGTAACTTTCACCCGTTGCAGATCACAA
TATTTTCTGGTCCTCAATttataaaattcaataaaattcaCGACATAATT
TGTGATTTGTTTGATTTCATTTGTTAAAGATTGTCTACAAAAGTAAGAAA
TGAGCAAAACAATAACCATAAATGAAAAACTTGAGAAAGCTGGAGAAGAG
AAAGAATTAGGAAATGGCTTTTTCAAAGAGGGGAATCTTCGTAAAGCTAT
CAAAAAATACCATATCGCGTTGATGTATATCAAGGATTTGGAGAAACCAA
GCCCATTTGATAAATTGGCTGGAATTGAGCCGAAAAAGGTCACAGATAGT
GAACTTCATGGAATTAAATCATTAAGAAGTGTTTGTTATAATAATCTGTC
AGCATGTCTTTTAAAATCTGAAGAATACCAGAAAGTCATTGAATACACTA
CCAAGGCTTTGGAGTATGACCAAAGTAACATCAAATCGCTTTATCGACGT
GGTCAAGCTCATTTCCATACTAAAGATTTCGATAAATCAGAAAAAGACTT
TCTACACATCAAATCGATAGACCCAAAAGagACATGTTACAATCCGTTTA
TGAAAAAGATTGAAGCGAATAAGAAAGTGAGAACGGTCAACGAGAAAGAA
ATGTATCGAAAAATGATGGATGGTTGATGCAAAATCATGACTCAGCTTTT
AAAGATGGTGGAGTTTTTGGGCGGTTGTTGAATAGGCAGGGTTCATCGAA
TTGATTCACTGTCGTTAATATCGGGATATTTTACCGCAGTACAGCTCTTT
TtcatttgacaaatttgagAGACGTTTATTCAACCTTTCAAGAGATTGTT
CGGattttttaaaacttgtttCTGATGAGTAATTAAATTAGTGTTGttca
ttttgaaactttcacaataaggaatattttttact Run BLAST on NCBI protein sequence of TCONS_00066736-protein >TCONS_00066736-protein ID=TCONS_00066736-protein|Name=TCONS_00066736-protein|organism=Clytia hemisphaerica|type=polypeptide|length=175bp
MSKTITINEKLEKAGEEKELGNGFFKEGNLRKAIKKYHIALMYIKDLEKP
SPFDKLAGIEPKKVTDSELHGIKSLRSVCYNNLSACLLKSEEYQKVIEYT
TKALEYDQSNIKSLYRRGQAHFHTKDFDKSEKDFLHIKSIDPKETCYNPF
MKKIEANKKVRTVNEKEMYRKMMDG Run BLAST on NCBI transcript from alignment at scaffold_459:144727..148763- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00066736 ID=TCONS_00066736|Name=TCONS_00066736|organism=Clytia hemisphaerica|type=transcript|length=4037bp|location=Sequence derived from alignment at scaffold_459:144727..148763- (Clytia hemisphaerica)
GGAAAAGTGACAAGAATCTTAGTGTGGAAACTTATAAGAAATAACAGTAC
TCTTTAGGTGCCTTTATAAATGCCCCCTGCTTGTTAATTTTTCAATCTTT
TTCCTACCCCCTGGACCTTATTTTGACCCAACATTTATTAATTTTTGAAG
AGTCCCTTACAGTATTTTGCTCAACTACCTTACTTTAGGGGTATTAGAAG
TATGATTTCCAACCTTTTTGGATGACCATCAATAATATGTTCCATTTGAT
TCATAAAACATCTTCAAATTCAGTCATTCAGTTGACCGGTACTGTCAATT
GGGGTTACTTTCATAAGTGAGAGGTAACTTTCACCCGTTGCAGATCACAA
TATTTTCTGGTCCTCAATTTATAAAATTCAATAAAATTCACGACATAATT
TGTGATTTGTTTGATTTCATTTGTTAAAGATTGTCTACAAAAGTAAGAAA
TGAGCAAAACAATAACCATAAATGAAAAACTTGAGAAAGCTGGAGAAGAG
AAAGAATTAGGAAATGGCTTTTTCAAAGAGGGGAATCTTCGTAAAGCTAT
CAAAAAATACCATATCGCGTTGATGTATATCAAGGATTTGGAGAAACCAA
GCCCATTTGATAAATTGGCTGGAATTGAGCCGAAAAAGGTCACAGATAGT
GAACTTCATGGAATTAAATCATTAAGAAGTGTTTGTTATAATAATCTGTC
AGGTAATATATAAAAAATATTTATTGTGAATTCAAGTTTGTAAATTTGTA
ATAGTTATCGGACAGTTGCGAGTACAATATGAGAAATATTTTACGAGTTC
CGAGATTTTTCCGTACAATATTTTCNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAACATCTTTTCGT
CAATTTATATTTTTACATGTAAAATACAAGATATATTGTACTCTTTTTAA
CCAATCAGATTGCAGATATTTTTTGGATCGCCAATAAAATGCTATACTGT
AGAAGGAAGTGAGATTACATCTTGTTTGTCACCAACAAAATTTTAAAATA
TGTTGATCTGCAGAATTTTTAAGCTTATTAACCCTTTAAGTGCCACAGTC
ATTTTTTTCTAATTTTTTTAAAGAAAATCGCTAGTTCAAACTTTAAAGGC
TTATATCTCCGGATCTAGAAGGAGTTAGAAGCCCGTTTTTATAGTCTGTT
GGATAGCTTAGAGTCTACTCTTTCTTTTAGGCGCCTTTGGCGCCGCCCGA
TTTAAGAAGGGCGGGCTGGGCGGCGGCTGCACAGACCTGACTGAATGATA
GAAAGGTGCCGAGTGGTAAAACTTTAAACTAATTCGCTGGAGGACAGAAT
CAAGTTAATCAGGGCCAAATTTGGAGGTTCTAGGATCACTCGTTGACCAA
AAATGGTCAAAAAACGGTCAAAATCTTAAAAAAGTGGATTTTTGTCAAAT
TTTTGCATTTTTTTGACTTTTTAGCTTAAAATCTTGCTGAAAAGACTCAC
TTTTGATTTTTTTTTGCTTGGCCATGAAGCCCAATGCAATCCGATTCCTA
CAAGTTAGACCAAAAATGACGATTTTCTAACTCAAACTGGGCCCTCCTAC
ATAGCCAATGTCTGATATATACGACATTGGCACTTAAAGGGTTAAGCTTG
GGAAAAGTCTTTCAACTGTCTACTACACTGAAATTACCTTTAAGAATTGA
GGAATAATAGATTGAAAAATGGGCAATCAATCGTAGTAAAATACGGTATT
TTTCTGACCAAAAAAGTATAATTCATGTATTTCAAATTGTTCCAGCTATA
CTCGGTACCGTTTTCTGCAAGGAAAATTGCATATTCCCTTTATATTTTAC
TAAACATACTTATTATATTAGGATACTGATAGACACAATAGGTGTCAGAA
ATTCATCTAACCTCACCAGAGGTTCTGATTTAGGTTTATTTTATTTAGAA
ATTTGTTATATTAGATATAAGTGGTCTTTATTTTAGACTGTTCTTTTTTC
AGCATGTCTTTTAAAATCTGAAGAATACCAGAAAGTCATTGAATACACTA
CCAAGGTTTGCCAACTATGTTTATCTCTTTATACATTCACCTTGTCATTT
GACACCTCTCCCTCCAATCGTTTTTGACCGACTAAAACTTGGAACGACTA
AATGACATTGAACACTCTCTTGTCAGTGAATGGCTTAGAGCGATGTTATA
CTATGGAAATTATAATGGAAAAAGTAAATTTAGGACCCTGTCTGATATCT
TCAGAACCTAAAAAGGGATCCTGGCCAATGGCACGTCCCCCGGACCCTTT
TTTGCCTAAGTGCCCCCGTGGAATTATATAATCTATTTGCGATATGGAAA
GGAACCTAAGGGAAATAACTTTGTTCCTGCTGCTTGAAGATAGATGCCTA
AAAAATAAAAAGCCTATAAGCCATATGGCTGCGATTTCGCTATTCAATTT
TTTTGAATTATTGTTATTCGAATTTCGTCTTCTGTGCTTTAGGCTTTGGA
GTATGACCAAAGTAACATCAAATCGCTTTATCGACGTGGTCAAGCTCATT
TCCATACTAAAGATTTCGATAAATCAGAAAAAGACTTTCTACACATCAAA
TCGATAGACCCAAAAGGTATATAATTGTCCTGTTGGATATGGTTGATGAT
TTTGTGCAATAAACTCTCACCACGATAACGTCAGTTTACCTTCGAAAGGT
TATTGTTTTGTTACATATATACCTTTTGTTTAACAAACATTATCGTGGGG
AGAAGTTTTTATTCCTACCAATTTTAAATTCAACCCTCTCAGGTTATTAT
CAGGCAATAATCGTTTTCCTGTTTGTAAAATCTGCAAACTTCTTTAACCT
CTCGGGATTTATTGATACCACAGTCTCATTTGCTTTTTTAAAAACGATTT
TTGTTTAGCGTTGATTTTTATTTTGTTTCAGAGACATGTTACAATCCGTT
TATGAAAAAGATTGAAGCGAATAAGAAAGTGAGAACGGTCAACGAGAAAG
AAATGTATCGAAAAATGATGGATGGTTGATGCAAAATCATGACTCAGCTT
TTAAAGATGGTGGAGTTTTTGGGCGGTTGTTGAATAGGCAGGGTTCATCG
AATTGATTCACTGTCGTTAATATCGGGATATTTTACCGCAGTACAGCTCT
TTTTCATTTGACAAATTTGAGAGACGTTTATTCAACCTTTCAAGAGATTG
TTCGGATTTTTTAAAACTTGTTTCTGATGAGTAATTAAATTAGTGTTGTT
CATTTTGAAACTTTCACAATAAGGAATATTTTTTACT Coding sequence (CDS) from alignment at scaffold_459:144727..148763- >TCONS_00066736 ID=TCONS_00066736|Name=TCONS_00066736|organism=Clytia hemisphaerica|type=CDS|length=2112bp|location=Sequence derived from alignment at scaffold_459:144727..148763- (Clytia hemisphaerica)
AGACATGTTACAATCCGTTTATGAAAAAGATTGAAGCGAATAAGAAAGTG
AGAACGGTCAACGAGAAAGAAATGTATCGAAAAATGATGGATGGTTGAGC
TTTGGAGTATGACCAAAGTAACATCAAATCGCTTTATCGACGTGGTCAAG
CTCATTTCCATACTAAAGATTTCGATAAATCAGAAAAAGACTTTCTACAC
ATCAAATCGATAGACCCAAAAGCATGTCTTTTAAAATCTGAAGAATACCA
GAAAGTCATTGAATACACTACCAAGATGAGCAAAACAATAACCATAAATG
AAAAACTTGAGAAAGCTGGAGAAGAGAAAGAATTAGGAAATGGCTTTTTC
AAAGAGGGGAATCTTCGTAAAGCTATCAAAAAATACCATATCGCGTTGAT
GTATATCAAGGATTTGGAGAAACCAAGCCCATTTGATAAATTGGCTGGAA
TTGAGCCGAAAAAGGTCACAGATAGTGAACTTCATGGAATTAAATCATTA
AGAAGTGTTTGTTATAATAATCTGTCAGAGACATGTTACAATCCGTTTAT
GAAAAAGATTGAAGCGAATAAGAAAGTGAGAACGGTCAACGAGAAAGAAA
TGTATCGAAAAATGATGGATGGTTGAGCTTTGGAGTATGACCAAAGTAAC
ATCAAATCGCTTTATCGACGTGGTCAAGCTCATTTCCATACTAAAGATTT
CGATAAATCAGAAAAAGACTTTCTACACATCAAATCGATAGACCCAAAAG
CATGTCTTTTAAAATCTGAAGAATACCAGAAAGTCATTGAATACACTACC
AAGATGAGCAAAACAATAACCATAAATGAAAAACTTGAGAAAGCTGGAGA
AGAGAAAGAATTAGGAAATGGCTTTTTCAAAGAGGGGAATCTTCGTAAAG
CTATCAAAAAATACCATATCGCGTTGATGTATATCAAGGATTTGGAGAAA
CCAAGCCCATTTGATAAATTGGCTGGAATTGAGCCGAAAAAGGTCACAGA
TAGTGAACTTCATGGAATTAAATCATTAAGAAGTGTTTGTTATAATAATC
TGTCAGAGACATGTTACAATCCGTTTATGAAAAAGATTGAAGCGAATAAG
AAAGTGAGAACGGTCAACGAGAAAGAAATGTATCGAAAAATGATGGATGG
TTGAGCTTTGGAGTATGACCAAAGTAACATCAAATCGCTTTATCGACGTG
GTCAAGCTCATTTCCATACTAAAGATTTCGATAAATCAGAAAAAGACTTT
CTACACATCAAATCGATAGACCCAAAAGCATGTCTTTTAAAATCTGAAGA
ATACCAGAAAGTCATTGAATACACTACCAAGATGAGCAAAACAATAACCA
TAAATGAAAAACTTGAGAAAGCTGGAGAAGAGAAAGAATTAGGAAATGGC
TTTTTCAAAGAGGGGAATCTTCGTAAAGCTATCAAAAAATACCATATCGC
GTTGATGTATATCAAGGATTTGGAGAAACCAAGCCCATTTGATAAATTGG
CTGGAATTGAGCCGAAAAAGGTCACAGATAGTGAACTTCATGGAATTAAA
TCATTAAGAAGTGTTTGTTATAATAATCTGTCAGAGACATGTTACAATCC
GTTTATGAAAAAGATTGAAGCGAATAAGAAAGTGAGAACGGTCAACGAGA
AAGAAATGTATCGAAAAATGATGGATGGTTGAGCTTTGGAGTATGACCAA
AGTAACATCAAATCGCTTTATCGACGTGGTCAAGCTCATTTCCATACTAA
AGATTTCGATAAATCAGAAAAAGACTTTCTACACATCAAATCGATAGACC
CAAAAGCATGTCTTTTAAAATCTGAAGAATACCAGAAAGTCATTGAATAC
ACTACCAAGATGAGCAAAACAATAACCATAAATGAAAAACTTGAGAAAGC
TGGAGAAGAGAAAGAATTAGGAAATGGCTTTTTCAAAGAGGGGAATCTTC
GTAAAGCTATCAAAAAATACCATATCGCGTTGATGTATATCAAGGATTTG
GAGAAACCAAGCCCATTTGATAAATTGGCTGGAATTGAGCCGAAAAAGGT
CACAGATAGTGAACTTCATGGAATTAAATCATTAAGAAGTGTTTGTTATA
ATAATCTGTCAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00066736-exon-scaffold_459-1575043694:148062..148763 | TCONS_00066736-exon-scaffold_459-1575043694:148062..148763 | Clytia hemisphaerica | exon |
| TCONS_00066736-exon-scaffold_459-1575043694:145959..146011 | TCONS_00066736-exon-scaffold_459-1575043694:145959..146011 | Clytia hemisphaerica | exon |
| TCONS_00066736-exon-scaffold_459-1575043694:145398..145521 | TCONS_00066736-exon-scaffold_459-1575043694:145398..145521 | Clytia hemisphaerica | exon |
| TCONS_00066736-exon-scaffold_459-1575043694:144727..145082 | TCONS_00066736-exon-scaffold_459-1575043694:144727..145082 | Clytia hemisphaerica | exon |
| TCONS_00066736-exon-scaffold_459-1510915933:148062..148763 | TCONS_00066736-exon-scaffold_459-1510915933:148062..148763 | Clytia hemisphaerica | exon |
| TCONS_00066736-exon-scaffold_459-1510915933:145959..146011 | TCONS_00066736-exon-scaffold_459-1510915933:145959..146011 | Clytia hemisphaerica | exon |
| TCONS_00066736-exon-scaffold_459-1510915933:145398..145521 | TCONS_00066736-exon-scaffold_459-1510915933:145398..145521 | Clytia hemisphaerica | exon |
| TCONS_00066736-exon-scaffold_459-1510915933:144727..145082 | TCONS_00066736-exon-scaffold_459-1510915933:144727..145082 | Clytia hemisphaerica | exon |
| TCONS_00066736-exon-scaffold_459-1491911889:148062..148763 | TCONS_00066736-exon-scaffold_459-1491911889:148062..148763 | Clytia hemisphaerica | exon |
| TCONS_00066736-exon-scaffold_459-1491911889:145959..146011 | TCONS_00066736-exon-scaffold_459-1491911889:145959..146011 | Clytia hemisphaerica | exon |
| TCONS_00066736-exon-scaffold_459-1491911889:145398..145521 | TCONS_00066736-exon-scaffold_459-1491911889:145398..145521 | Clytia hemisphaerica | exon |
| TCONS_00066736-exon-scaffold_459-1491911889:144727..145082 | TCONS_00066736-exon-scaffold_459-1491911889:144727..145082 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_459 | supercontig | scaffold_459:144727..148763 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0005515 | protein binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0005515 |
protein binding |
Blast
BLAST of TCONS_00066736 vs. Swiss-Prot (Human)
Match: TTC9C (Tetratricopeptide repeat protein 9C OS=Homo sapiens GN=TTC9C PE=1 SV=1) HSP 1 Score: 88.9669 bits (219), Expect = 1.443e-20 Identity = 50/152 (32.89%), Postives = 85/152 (55.92%), Query Frame = 3
Query: 522 FKEGNLRKAIKKYHIALMYIKDLEK--PSPFDKLAGIEPKKVTDSELHGIKSLRSVCYNNLSACLLKSE--EYQKVIEYTTKALEYDQSNIKSLYRRGQAHFHTKDFDKSEKDFLHIKSIDPKETCYNPFMKKIEANKKVRTVNEKEMYRKM 965
++EG R A+ +YH AL+ ++ L+ PSP L G + +T + + + + ++ CYNNL+ACLL+ E Y++V EY+ K LE N K+LYR G A FH +D+D++ L + PK+ +++ ++ EK++Y M
Sbjct: 19 YREGKYRDAVSRYHRALLQLRGLDPSLPSPLPNL-GPQGPALTPEQENILHTTQTDCYNNLAACLLQMEPVNYERVREYSQKVLERQPDNAKALYRAGVAFFHLQDYDQARHYLLAAVNRQPKDANVRRYLQLTQSELSSYHRKEKQLYLGM 169
The following BLAST results are available for this feature:
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