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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00066728 ID=TCONS_00066728|Name=TCONS_00066728|organism=Clytia hemisphaerica|type=transcript|length=286bp
GGAAGTTGCAAAAAGTCTACGAAACCAACAACCAGATTGATGACATCACT
TTACATCAAAGCACGTAATTGACATATTTGTTGAcaaatcaaaaacaatt
caTCACATTTCACGCCTTCATGTCCCAAAGtgTCGCGTTTCAGCTGGCTT
CTGGATAATTGTTCCATCAAAATTGGTCAACAAGTTCCTGCAATCACAAT
GAGATTTATATCAAATCCTCGAATTATATGCATATCTTCAGAGTCAATGT
TATATATTGTATCAATAAATTTGAAAGAGATTTAAT Run BLAST on NCBI transcript from alignment at scaffold_459:194958..196864+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00066728 ID=TCONS_00066728|Name=TCONS_00066728|organism=Clytia hemisphaerica|type=transcript|length=1907bp|location=Sequence derived from alignment at scaffold_459:194958..196864+ (Clytia hemisphaerica)
GGAAGTTGCAAAAAGTCTACGAAACCAACAACCAGGTAAATTTTCTTGTT
AATTTCTAATTGTGAAATAAAGGAAATTTTCTATTCTTTGAATTGACCAA
TTTGCTTTTTCAATTGAAAAGTCTTTTAAGTTATAATTTTAACTAGGAAA
TGTTCAAGACTGACAAAGTTTTCTCTATCTTAGCTCGCAGATTGTTTCTT
TGGACTTTCCTCGCCACTGAGAACGTATCAACTTCCAAAGCATACATCAA
CAACCAAATGGACAATAAATATAAGTATTTTCGCTAGCATATTTATTTTG
ATCGATAATTTCACTTTGAGTTAGTGTAATaaccagaaaaaagtttttta
ttagtACGTTTTAATCCAGTCATACATATTTAgcatcaacaaatttatac
aaGCACACTTGTTTGATTTGACGTTTTAAGACGGGCGAAATCTTCTAAAG
AACTACCCTTTTGGAGGGTCGGTTCGGTGCTAGTATTTTTCTGTCCTTTT
GAAAATGAGAGTTTTTTATTGGCAAGTTTTAATTCAGTCATACatatttt
gtattaaaaatttATGTAAGCACATTTGTTTGATTTGACGTTGTAAGACG
GGCGAAATCTTAAGTACTATACTACTCTTTAGGATATGAGACTTCTTCTA
TATATTTGAAAGTTCCGTTGCGTAGACTGAATTTATATCTGATTTTCTTT
CAGATTGATGACATCACTTTACATCAAAGCACGTAATTGACATATTTGTT
GAcaaatcaaaaacaattcaTCACATTTCACGCCTTCATGTCCCAAAGGT
AAAcaatataaaattaaatataaaaacCAAGTAATTGTTTTAATTGAATC
AAGTAATTgcgaaaaaaagaattatttaatatcatatttttttaaagttt
aattttcaCGTCTAAGTGAGAGTCGATCATCTACGCATAAATCTGTTTGC
TTAAAACAATACACAAATCCCTTAAAAATACAGGCGATTCATTTCAATTC
TTTATCAACATTTTGCCACGCAAACTTTCGGGTTGTTAAAATCTAATTTA
TAAAAGAAACTAAACAATCAAGTGACGTAACGcgggttcttttgttttga
tgattggtcTGAATAACTGCAATGTTTTTGCAAGCTCTAGCATTTTTGaa
gcagcgattcagacctcAATAACAATGAAataatgtcaatctggcttNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNAATACGTAAAGTGCAAGTAAACTTTTTCAGGTC
TTTACGAAAATTCGGTTtataattacacccctgtctcagtgactcgTTAA
GATTTTGTGACCGGTGGGGATGGAAAAGTAATAGCTGAATACCGATACAT
GGAGCGGAGAATCTCTTTGTTTTTAACGAATGGGGATTTAAAATTCTATT
TCTTACAGCTGAAAAATTCCACAAAAATATTACTGACTTTTCGAGTGAGC
ATAAGAGCCTAAGAGGGTAAGAGTAGTGGGAATAAAATTTCAGGGGATAT
TTCCCATCAGAGACGGATTTTCGGTCAATATTCCAAATGGATTTGGGATC
CCACCCAAATTGTGAGACGGAAgtgtaaaattgtttttatttttgtttta
gtgTCGCGTTTCAGCTGGCTTCTGGATAATTGTTCCATCAAAATTGGTCA
ACAAGTTCCTGCAATCACAATGAGATTTATATCAAATCCTCGAATTATAT
GCATATCTTCAGAGTCAATGTTATATATTGTATCAATAAATTTGAAAGAG
ATTTAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00066728-exon-scaffold_459-1491911889:194958..194992 | TCONS_00066728-exon-scaffold_459-1491911889:194958..194992 | Clytia hemisphaerica | exon |
| TCONS_00066728-exon-scaffold_459-1510915933:194958..194992 | TCONS_00066728-exon-scaffold_459-1510915933:194958..194992 | Clytia hemisphaerica | exon |
| TCONS_00066728-exon-scaffold_459-1575043694:194958..194992 | TCONS_00066728-exon-scaffold_459-1575043694:194958..194992 | Clytia hemisphaerica | exon |
| TCONS_00066728-exon-scaffold_459-1491911889:195661..195755 | TCONS_00066728-exon-scaffold_459-1491911889:195661..195755 | Clytia hemisphaerica | exon |
| TCONS_00066728-exon-scaffold_459-1510915933:195661..195755 | TCONS_00066728-exon-scaffold_459-1510915933:195661..195755 | Clytia hemisphaerica | exon |
| TCONS_00066728-exon-scaffold_459-1575043694:195661..195755 | TCONS_00066728-exon-scaffold_459-1575043694:195661..195755 | Clytia hemisphaerica | exon |
| TCONS_00066728-exon-scaffold_459-1491911889:196709..196864 | TCONS_00066728-exon-scaffold_459-1491911889:196709..196864 | Clytia hemisphaerica | exon |
| TCONS_00066728-exon-scaffold_459-1510915933:196709..196864 | TCONS_00066728-exon-scaffold_459-1510915933:196709..196864 | Clytia hemisphaerica | exon |
| TCONS_00066728-exon-scaffold_459-1575043694:196709..196864 | TCONS_00066728-exon-scaffold_459-1575043694:196709..196864 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_459 | supercontig | scaffold_459:194958..196864 + |
Blast
The following BLAST results are available for this feature:
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