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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00066711 ID=TCONS_00066711|Name=TCONS_00066711|organism=Clytia hemisphaerica|type=transcript|length=2741bp
aaaattgtagtttcttgtcatttttttccaaactgaggctgggcatgttc
ttaagatgttcttaatttttcgacgaatttcagcctatatgttcttataa
actaggttctaataaaaaaaaaaacgtgtagctcaAAATATTTTAGACTT
ATTTGGGTAAATAAGTCAATCGATAGAGTTATTTTCACACTGTAGATATG
TCATCATCTATAAACATCCTAGTTTACATTGAAAATAGTGTTCAGTCAAT
TTTGAGGGTTACCGTGTACTAATTTGGGAAGTTAGAAATAGAGCAAATAG
AAGCAATATGAAATTCTGTGGTGAAgctattgtttgtttttttcgttCAC
TTATTTGTACACTGTTGTTATCCTTTGCAATGTGTTAAAATCGGTGAATG
TAAGAAGTAGCGTCACAATTCGGTCTCCTGGCTCGCTATCAATCTCCTTT
CAAGTTTTGATTATTGATATTGCGTGAATTGCAAAAGTAATGCCAGTTAA
TACCAAAAGAAGGAATTAGGCTGTGGTCCATTTTGTCACACATGGTTTGC
TTCACTTTCTCGAACTCAAAGATAATGCTAATGATCtgattgattttgtt
ttgaactgTCAAAGAAGGTAATCGATCGGAGTACTTTGTACTAAGTACTT
CGAATGCACTTCTATACAAGCCACTCAAGATATGTTTCTATTTTTGTACC
AAAACCTCTGTGGTAGATGAGCTCATTTTCTATCTTGAAAAGGCACCGAA
TGCAATAACAATAGTACTCCACAGTAGACGCTATCTTGACATAAGTGGCC
CCTAATGACTCATCATTAGTCTCAATTTGGTGGTTTTGTGATATATGAGG
GTCATTAGTAGATAACGCCTCTTTAATCAGCCACTTCAACTTCGAGAAAT
TGATCCCCTCATCAGTTCTGTAAGTTGGAGATATTGCCCAATTCCACAGC
AGATATGGTATCATTGATTTGTATGTGGGGGTTGTGCTTTGATGTTCTCA
AATTACCAATATTTTATCGAAACTTGTGTCTCATTAACTGTAGTATTGTG
TATCAGTATTTCTAGGTTTAAGGGATCTGTGCACTCAAATTGGCAATCTT
ACGTTCAAATGATGATTGTGGCTAAGAATTTCATCAATACAAGAATGGCA
TAGCTCAGAATGTTAGATTGAATTTTCAATGTTTACTTTTTGAGATGGTT
ATATGGATTAAAGCATTTCTCTAACTCTGTCATACTgtgaaaaatatcaa
taaggagGCAGTTCTTGTGATGGTACAGTTAATCAATGAATTTGTTAACT
GTCGATAAATGGAATTCCATAACCTGTCTGTTGCCAGTCAGCTGGAAAGA
GAGCGAGTCATTTTTCACATCTCAAAATTTGTTAATTAGATGATGGTTAG
ATACGAGCCATTAACAATCTTTTTAACGAATTCTTTCATAACCATTGGCC
TGAGTTCTCTTATTAAAAATTGAAGCTTGTCGTATGTCTGTGTGAATGAA
CGTTGTTTTTgctttaatgacttttttacgACTTTTTGTTCTGTGTAAGG
CCGTTAAAAACTCATTAGCAAACATTTGCGTGTTGGTGCGCCATTATGAC
GTAATTTAACGATGTATTTGAATGGTGATTGGCTCGTAGGCTTGGGAATG
GATATAATGCCTAGATACTGAATAGTAATGTTGATGTAATACATAATGAG
ATATCGTCGAAAATGGTAGGCGCGACGGAAGCTTTTTTAATCTGGTACGG
CGATTGTTgaattttaagctattttacCGACGAAAAGAGGAGTTTTAGGG
TTTTACCCGGTGCGTCGTGCCTGAAATGGTTTGCTTCATTTTCTACGTAC
TAAGGTTCGATTGAAAGATTGAACTACCATGAGGTGATTGATTTatagag
tttttttttgaaatggttGATTCTTCTTTCATGGTATGACCAAAAAAAGT
TCCGTTATGATTGTCACGTGATACACTCTTTTTAAGAACtattttatgag
aacaattaATTTGCAGGATATCAGGTTATCCACGGATGAAAGTAGTAAAA
TTCGGTTTAAAACTCATAATACAACAATTTTGACATAAAGTTAAGAGCAG
GGTAAGAATAACTTGAACCTCTAAATACGTGTTAATAGCTTTGAAccaat
tttcttgaatttttcttcACGCTGCTTGTAATAGTGatacgtttttttca
aaatttttgaagctttcagattttcttaactttttaagttttaagcttaa
aaatgttcttaacatgttcttatttgcaacattttttgagcattttagtc
cattttcctaagaaaaagggtgtttttgagtccgcaaagccttaaaatgt
tcttaacttgttcttaacagtttgtccatcgaagccttatgttcttatac
agtttgttcttataaaaaaacgtgtagtgatTCTCTAAGAATACCCACTT
TGAAAACGAGGTGTATACATTTTTATTGGCTTACGTGATATGATATGACT
ATTTCATACTTTCTAAAATGTCcttgagaaaaagaaaacaaatactACTG
TTAGCTAACCGACGTTTATTCTTAACAGCTATTTACACTTTGGTAGGTAA
AGAAAATTTTGGTCACATACTCTCTTCTCTCTCTCGCTTCCCTCATATGA
CTTGTGCTTGTGGTGCTTCAGTAAAGAAAGTTTGATTCTGCTTCTTTGGA
ATGGCTTTGAATGCTAAATGATATGGGCTTTTTTCAAACAT Run BLAST on NCBI transcript from alignment at scaffold_458:90637..93377 Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00066711 ID=TCONS_00066711|Name=TCONS_00066711|organism=Clytia hemisphaerica|type=transcript|length=2741bp|location=Sequence derived from alignment at scaffold_458:90637..93377 (Clytia hemisphaerica)
ATGTTTGAAAAAAGCCCATATCATTTAGCATTCAAAGCCATTCCAAAGAA
GCAGAATCAAACTTTCTTTACTGAAGCACCACAAGCACAAGTCATATGAG
GGAAGCGAGAGAGAGAAGAGAGTATGTGACCAAAATTTTCTTTACCTACC
AAAGTGTAAATAGCTGTTAAGAATAAACGTCGGTTAGCTAACAGTagtat
ttgttttctttttctcaagGACATTTTAGAAAGTATGAAATAGTCATATC
ATATCACGTAAGCCAATAAAAATGTATACACCTCGTTTTCAAAGTGGGTA
TTCTTAGAGAatcactacacgtttttttataagaacaaactgtataagaa
cataaggcttcgatggacaaactgttaagaacaagttaagaacattttaa
ggctttgcggactcaaaaacaccctttttcttaggaaaatggactaaaat
gctcaaaaaatgttgcaaataagaacatgttaagaacatttttaagctta
aaacttaaaaagttaagaaaatctgaaagcttcaaaaattttgaaaaaaa
cgtatCACTATTACAAGCAGCGTgaagaaaaattcaagaaaattggTTCA
AAGCTATTAACACGTATTTAGAGGTTCAAGTTATTCTTACCCTGCTCTTA
ACTTTATGTCAAAATTGTTGTATTATGAGTTTTAAACCGAATTTTACTAC
TTTCATCCGTGGATAACCTGATATCCTGCAAATtaattgttctcataaaa
taGTTCTTAAAAAGAGTGTATCACGTGACAATCATAACGGAACTTTTTTT
GGTCATACCATGAAAGAAGAATCaaccatttcaaaaaaaaactctatAAA
TCAATCACCTCATGGTAGTTCAATCTTTCAATCGAACCTTAGTACGTAGA
AAATGAAGCAAACCATTTCAGGCACGACGCACCGGGTAAAACCCTAAAAC
TCCTCTTTTCGTCGgtaaaatagcttaaaattcAACAATCGCCGTACCAG
ATTAAAAAAGCTTCCGTCGCGCCTACCATTTTCGACGATATCTCATTATG
TATTACATCAACATTACTATTCAGTATCTAGGCATTATATCCATTCCCAA
GCCTACGAGCCAATCACCATTCAAATACATCGTTAAATTACGTCATAATG
GCGCACCAACACGCAAATGTTTGCTAATGAGTTTTTAACGGCCTTACACA
GAACAAAAAGTcgtaaaaaagtcattaaagcAAAAACAACGTTCATTCAC
ACAGACATACGACAAGCTTCAATTTTTAATAAGAGAACTCAGGCCAATGG
TTATGAAAGAATTCGTTAAAAAGATTGTTAATGGCTCGTATCTAACCATC
ATCTAATTAACAAATTTTGAGATGTGAAAAATGACTCGCTCTCTTTCCAG
CTGACTGGCAACAGACAGGTTATGGAATTCCATTTATCGACAGTTAACAA
ATTCATTGATTAACTGTACCATCACAAGAACTGCctccttattgatattt
ttcacAGTATGACAGAGTTAGAGAAATGCTTTAATCCATATAACCATCTC
AAAAAGTAAACATTGAAAATTCAATCTAACATTCTGAGCTATGCCATTCT
TGTATTGATGAAATTCTTAGCCACAATCATCATTTGAACGTAAGATTGCC
AATTTGAGTGCACAGATCCCTTAAACCTAGAAATACTGATACACAATACT
ACAGTTAATGAGACACAAGTTTCGATAAAATATTGGTAATTTGAGAACAT
CAAAGCACAACCCCCACATACAAATCAATGATACCATATCTGCTGTGGAA
TTGGGCAATATCTCCAACTTACAGAACTGATGAGGGGATCAATTTCTCGA
AGTTGAAGTGGCTGATTAAAGAGGCGTTATCTACTAATGACCCTCATATA
TCACAAAACCACCAAATTGAGACTAATGATGAGTCATTAGGGGCCACTTA
TGTCAAGATAGCGTCTACTGTGGAGTACTATTGTTATTGCATTCGGTGCC
TTTTCAAGATAGAAAATGAGCTCATCTACCACAGAGGTTTTGGTACAAAA
ATAGAAACATATCTTGAGTGGCTTGTATAGAAGTGCATTCGAAGTACTTA
GTACAAAGTACTCCGATCGATTACCTTCTTTGAcagttcaaaacaaaatc
aatcaGATCATTAGCATTATCTTTGAGTTCGAGAAAGTGAAGCAAACCAT
GTGTGACAAAATGGACCACAGCCTAATTCCTTCTTTTGGTATTAACTGGC
ATTACTTTTGCAATTCACGCAATATCAATAATCAAAACTTGAAAGGAGAT
TGATAGCGAGCCAGGAGACCGAATTGTGACGCTACTTCTTACATTCACCG
ATTTTAACACATTGCAAAGGATAACAACAGTGTACAAATAAGTGaacgaa
aaaaacaaacaatagcTTCACCACAGAATTTCATATTGCTTCTATTTGCT
CTATTTCTAACTTCCCAAATTAGTACACGGTAACCCTCAAAATTGACTGA
ACACTATTTTCAATGTAAACTAGGATGTTTATAGATGATGACATATCTAC
AGTGTGAAAATAACTCTATCGATTGACTTATTTACCCAAATAAGTCTAAA
ATATTTtgagctacacgtttttttttttattagaacctagtttataagaa
catataggctgaaattcgtcgaaaaattaagaacatcttaagaacatgcc
cagcctcagtttggaaaaaaatgacaagaaactacaatttt
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00066711-exon-scaffold_458-1491911889:90637..93377 | TCONS_00066711-exon-scaffold_458-1491911889:90637..93377 | Clytia hemisphaerica | exon |
| TCONS_00066711-exon-scaffold_458-1510915933:90637..93377 | TCONS_00066711-exon-scaffold_458-1510915933:90637..93377 | Clytia hemisphaerica | exon |
| TCONS_00066711-exon-scaffold_458-1575043694:90637..93377 | TCONS_00066711-exon-scaffold_458-1575043694:90637..93377 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_458 | supercontig | scaffold_458:90637..93377 . |
Blast
The following BLAST results are available for this feature:
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