TCONS_00066707 (transcript) - C. hemisphaerica

Overview
NameTCONS_00066707
Unique NameTCONS_00066707
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1812

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00066707 ID=TCONS_00066707|Name=TCONS_00066707|organism=Clytia hemisphaerica|type=transcript|length=1812bp
GTGCGGGTTACTACGTAAACCCCATCTAGTTCTATTACATCAGATCAGAT
AGGCTCAGTTCCACGTCACGGCTCCGGCTCTCGTTGCGGTCTTCACAACC
GTCCGCGGTTATAGGCTTTAAGTAGATTTATCTCTCGATGCATCCCCAAA
TGTCACGCCAAAACAAACACACTTTCTTACGTTTCATTTTATAGTCAAGA
TATCTCATTTCACAATTATACATTTGTCTCCTATTCATTGTTTCCCCTTG
TTTATGTTTAGGGTATCTTATCACTATTTTCGGGTATTTCGACCATAACA
TAATAAACTGAGGCTCTTacaaatatattcttttatctctaaaaaagaaa
atgtcgCTTAGTTAGAGTTTGTGTCTCTTCTTTATAAAAATGTCTGGTTG
TGATTGGAAAAGTGAAATTAGAGAAAAAGTTCATCAAATTTTTGTAAGTG
AGCCTGAAACTTTCGCACGGATTCTTTTTTACTtggatgaagaagaaaaa
gcatACGACGACACAGATAAATCTCCTGTTTGGAAAACATTACGAGTTGC
TGCAAAGGCTGTTACCACGTTTGAAGCTTACGCGCGTCGATTAGCAGATG
ATACTAAGCGAGCAGAAAAAGATGAAAGTTTTCGATTAGTAATGCAAAAA
ATGTATGCATTATTTTCTGAACCCAGTGAAAACGGGCAATCTGTTAGTAT
GGAATTAGTGCCATCAGAAAACCGAATTGCCGCTATCTTTCCTGGTATGG
CTATTGTATGGGATATGGTTGGTCCCGAAGGGCAGAAAAAGCTTTTACCT
GTAATTTTAAAAGTCTGTGGAAAGTTTGGGGGCCGAGAACTGGTAGCAGT
TACTGATGAGCTTGCAAGTCTTATTACAAAAAATGGCGGCGCTCTGGTGG
CTGTCGCCCTAGCAGCTGTTTATCTTACTATTGATGCTATCCTTAATATT
CGAAAATGGTGGTTAGGAGAGATTTCAGGAAAAAGATGTGCCAAATCGAT
CATTGATACTGCAGGGGCGGTTACTGGTGCCATAGGTGGAGGAGCTGGTG
GAGCCGCCCTTGGTTCTTTTGCTGGTCCTATAGGGGCATTTGCAGGTAGC
TTAATTGGATCATTACTTGGGAATTTTGTTGCATTATCTTTGATTGAGAA
ATTGACAGAATTTCTATTTGATTTACCACGTGATGTTGCTGTCGAAAAAT
CGTACGATTATTTAGGCGTTACCAGATCCTCCAGTAACAATGATGTCAAC
AGGGCGTTCAGAAATCTTTGTTTGAAGCACCACCCTGATAAAGGGGGCGA
TGTGTCAGAGTTCATCACTCTTCAATCACATATGGCTATCATTAAACAAG
CAAGAGGAGAATTATAAACTTATTATTAAGGCTTTTAAtgattacacccc
cttctcacagactcggtaggttttttcagccagttgaggtaaaaataacg
gacggCTCTTCAgcggggattgatattcccatattatTTATGGCTggctt
taaattcttttgttttcaattcagaAACTCCAGTGGGATGGGAAGAATAG
Cattatattttgcagtgaggattggtttatttgactatttttagtgggaa
caaaaaaattagaatataattttccactggggacggtattttggccaatt
tttccagtgggaaggggatGTATGATTTGTTGAAACTCTATTTAGTAGAG
CTTGGAGTTTTTCTTTAAGTAGCATTAATCTATAGACATTGTCATTTCAG
TTTTCTTTATTATTAGGACATTGACTATCactagtaaaatatttttttgt
tgaaaattaaag
Run BLAST on NCBI

protein sequence of TCONS_00066707-protein

>TCONS_00066707-protein ID=TCONS_00066707-protein|Name=TCONS_00066707-protein|organism=Clytia hemisphaerica|type=polypeptide|length=325bp
MSGCDWKSEIREKVHQIFVSEPETFARILFYLDEEEKAYDDTDKSPVWKT
LRVAAKAVTTFEAYARRLADDTKRAEKDESFRLVMQKMYALFSEPSENGQ
SVSMELVPSENRIAAIFPGMAIVWDMVGPEGQKKLLPVILKVCGKFGGRE
LVAVTDELASLITKNGGALVAVALAAVYLTIDAILNIRKWWLGEISGKRC
AKSIIDTAGAVTGAIGGGAGGAALGSFAGPIGAFAGSLIGSLLGNFVALS
LIEKLTEFLFDLPRDVAVEKSYDYLGVTRSSSNNDVNRAFRNLCLKHHPD
KGGDVSEFITLQSHMAIIKQARGEL
Run BLAST on NCBI

transcript from alignment at scaffold_458:192824..195324-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00066707 ID=TCONS_00066707|Name=TCONS_00066707|organism=Clytia hemisphaerica|type=transcript|length=2501bp|location=Sequence derived from alignment at scaffold_458:192824..195324- (Clytia hemisphaerica)
GTGCGGGTTACTACGTAAACCCCATCTAGTTCTATTACATCAGATCAGAT
AGGCTCAGTTCCACGTCACGGCTCCGGCTCTCGTTGCGGTCTTCACAACC
GTCCGCGGTTATAGGCTTTAAGTAGATTTATCTCTCGATGCATCCCCAAA
TGTCACGCCAAAACAAACACACTTTCTTACGTTTCATTTTATAGTCAAGA
TATCTCATTTCACAATTATACATTTGTCTCCTATTCATTGTTTCCCCTTG
TTTATGTTTAGGGTATCTTATCACTATTTTCGGGTATTTCGACCATAACA
TAATAAACTGAGGCTCTTACAAATATATTCTTTTATCTCTAAAAAAGAAA
ATGTCGCTTAGTTAGAGTTTGTGTCTCTTCTTTATAAAAATGTCTGGTTG
TGATTGGAAAAGTGAAATTAGAGAAAAAGTTCATCAAATTTTTGTAAGTG
AGCCTGAAACTTTCGCACGGATTCTTTTTTACTTGGATGAAGAAGAAAAA
GCATACGACGACACAGATAAATCTCCTGTTTGGAAAACATTACGAGTTGC
TGCAAAGGCTGTTACCACGTTTGAAGCTTACGCGCGTCGATTAGCAGATG
ATACTAAGCGAGCAGAAAAAGATGAAAGTTTTCGATTAGTAATGCAAAAA
ATGTATGCATTATTTTCTGAACCCAGTGAAAACGGGCAATCTGTTAGTAT
GGAATTAGTGCCATCAGAAAACCGAATTGCCGCTATCTTTCCTGGTATGG
CTATTGTATGGGATATGGTTGGTCCCGAAGGGCAGAAAAAGCTTTTACCT
GTAATTTTAAAAGTCTGTGGAAAGTTTGGGGGCCGAGAACTGGTAGCAGT
TACTGATGAGCTTGCAAGTCTTATTACAAAAAATGGCGGCGCTCTGGTGG
CTGTCGCCCTAGCAGCTGTTTATCTTACTATTGATGCTATCCTTAATATT
CGAAAATGGTGGTTAGGAGAGATTTCAGGAAAAAGATGTGCCAAATCGAT
CATTGATACTGCAGGGGCGGTTACTGGTGCCATAGGTGGAGGAGCTGGTG
GAGCCGCCCTTGGTTCTTTTGCTGGTCCTATAGGGGCATTTGCAGGTATG
CAACAATATTGATTTTATTTGTTTCAGTATTATGAGGTGAAAATACTTTT
TTTATCTTAAAAGAAGGGTTTTTTCAAAAAGAAATTTGATTATGCTAGAT
CAGAGAAAAAACATTACACTACAGTACACCACGTTATGCGTAAGTTAATG
GTTGTTTGAAAATTCCCTTTTCTCTAGATTTGTGATGCTAATGCTATTTT
CAGAGTAAATTTTAAATGAAAACAAACTTATTGTTATTCCACTTAATAGT
TTTACAGATGTTGACTCTAATAACAACGTCACTGAATGAACTTTAATTAA
TCCTCTGAAATGCAATATATTGTCAGCGTGATTTGCAATTTTCCAACAAC
ATAGGGGGGAATGTTTTGACTCTTGACTTTTGAAGATCCACCCCTAGATT
TGGTTAAAACTGCTTAAACTTAAAAAGAGGAAAAAATTGTAGTTTCTTGT
CATTTTTTTCCAAACTGAGGCTGGGCATGTTCTTAAGATGTTCTTAATTT
TTCGACGAATTTCAGCCTATATGTTCTTATAAACTAGGTTCTAATAAAAA
AAAAACGTGTAAAGCATCTGTTATTTACTTTTTACATTACAGTCTGAAAA
CGATATTGTTAAATATTGTTTGTCAATTTATATTGTGTAGTCTAAGTAGC
TCTTATAATAAAAAATTTTAATACATTTTTTAAGGTAGCTTAATTGGATC
ATTACTTGGGAATTTTGTTGCATTATCTTTGATTGAGAAATTGACAGAAT
TTCTATTTGATTTACCACGTGATGTTGCTGTCGAAAAATCGTACGATTAT
TTAGGCGTTACCAGATCCTCCAGTAACAATGATGTCAACAGGGCGTTCAG
AAATCTTTGTTTGAAGCACCACCCTGATAAAGGGGGCGATGTGTCAGAGT
TCATCACTCTTCAATCACATATGGCTATCATTAAACAAGCAAGAGGAGAA
TTATAAACTTATTATTAAGGCTTTTAATGATTACACCCCCTTCTCACAGA
CTCGGTAGGTTTTTTCAGCCAGTTGAGGTAAAAATAACGGACGGCTCTTC
AGCGGGGATTGATATTCCCATATTATTTATGGCTGGCTTTAAATTCTTTT
GTTTTCAATTCAGAAACTCCAGTGGGATGGGAAGAATAGCATTATATTTT
GCAGTGAGGATTGGTTTATTTGACTATTTTTAGTGGGAACAAAAAAATTA
GAATATAATTTTCCACTGGGGACGGTATTTTGGCCAATTTTTCCAGTGGG
AAGGGGATGTATGATTTGTTGAAACTCTATTTAGTAGAGCTTGGAGTTTT
TCTTTAAGTAGCATTAATCTATAGACATTGTCATTTCAGTTTTCTTTATT
ATTAGGACATTGACTATCACTAGTAAAATATTTTTTTGTTGAAAATTAAA
G

Coding sequence (CDS) from alignment at scaffold_458:192824..195324-

>TCONS_00066707 ID=TCONS_00066707|Name=TCONS_00066707|organism=Clytia hemisphaerica|type=CDS|length=1956bp|location=Sequence derived from alignment at scaffold_458:192824..195324- (Clytia hemisphaerica)
GTAGCTTAATTGGATCATTACTTGGGAATTTTGTTGCATTATCTTTGATT
GAGAAATTGACAGAATTTCTATTTGATTTACCACGTGATGTTGCTGTCGA
AAAATCGTACGATTATTTAGGCGTTACCAGATCCTCCAGTAACAATGATG
TCAACAGGGCGTTCAGAAATCTTTGTTTGAAGCACCACCCTGATAAAGGG
GGCGATGTGTCAGAGTTCATCACTCTTCAATCACATATGGCTATCATTAA
ACAAGCAAGAGGAGAATTATAAATGTCTGGTTGTGATTGGAAAAGTGAAA
TTAGAGAAAAAGTTCATCAAATTTTTGTAAGTGAGCCTGAAACTTTCGCA
CGGATTCTTTTTTACTTGGATGAAGAAGAAAAAGCATACGACGACACAGA
TAAATCTCCTGTTTGGAAAACATTACGAGTTGCTGCAAAGGCTGTTACCA
CGTTTGAAGCTTACGCGCGTCGATTAGCAGATGATACTAAGCGAGCAGAA
AAAGATGAAAGTTTTCGATTAGTAATGCAAAAAATGTATGCATTATTTTC
TGAACCCAGTGAAAACGGGCAATCTGTTAGTATGGAATTAGTGCCATCAG
AAAACCGAATTGCCGCTATCTTTCCTGGTATGGCTATTGTATGGGATATG
GTTGGTCCCGAAGGGCAGAAAAAGCTTTTACCTGTAATTTTAAAAGTCTG
TGGAAAGTTTGGGGGCCGAGAACTGGTAGCAGTTACTGATGAGCTTGCAA
GTCTTATTACAAAAAATGGCGGCGCTCTGGTGGCTGTCGCCCTAGCAGCT
GTTTATCTTACTATTGATGCTATCCTTAATATTCGAAAATGGTGGTTAGG
AGAGATTTCAGGAAAAAGATGTGCCAAATCGATCATTGATACTGCAGGGG
CGGTTACTGGTGCCATAGGTGGAGGAGCTGGTGGAGCCGCCCTTGGTTCT
TTTGCTGGTCCTATAGGGGCATTTGCAGGTAGCTTAATTGGATCATTACT
TGGGAATTTTGTTGCATTATCTTTGATTGAGAAATTGACAGAATTTCTAT
TTGATTTACCACGTGATGTTGCTGTCGAAAAATCGTACGATTATTTAGGC
GTTACCAGATCCTCCAGTAACAATGATGTCAACAGGGCGTTCAGAAATCT
TTGTTTGAAGCACCACCCTGATAAAGGGGGCGATGTGTCAGAGTTCATCA
CTCTTCAATCACATATGGCTATCATTAAACAAGCAAGAGGAGAATTATAA
ATGTCTGGTTGTGATTGGAAAAGTGAAATTAGAGAAAAAGTTCATCAAAT
TTTTGTAAGTGAGCCTGAAACTTTCGCACGGATTCTTTTTTACTTGGATG
AAGAAGAAAAAGCATACGACGACACAGATAAATCTCCTGTTTGGAAAACA
TTACGAGTTGCTGCAAAGGCTGTTACCACGTTTGAAGCTTACGCGCGTCG
ATTAGCAGATGATACTAAGCGAGCAGAAAAAGATGAAAGTTTTCGATTAG
TAATGCAAAAAATGTATGCATTATTTTCTGAACCCAGTGAAAACGGGCAA
TCTGTTAGTATGGAATTAGTGCCATCAGAAAACCGAATTGCCGCTATCTT
TCCTGGTATGGCTATTGTATGGGATATGGTTGGTCCCGAAGGGCAGAAAA
AGCTTTTACCTGTAATTTTAAAAGTCTGTGGAAAGTTTGGGGGCCGAGAA
CTGGTAGCAGTTACTGATGAGCTTGCAAGTCTTATTACAAAAAATGGCGG
CGCTCTGGTGGCTGTCGCCCTAGCAGCTGTTTATCTTACTATTGATGCTA
TCCTTAATATTCGAAAATGGTGGTTAGGAGAGATTTCAGGAAAAAGATGT
GCCAAATCGATCATTGATACTGCAGGGGCGGTTACTGGTGCCATAGGTGG
AGGAGCTGGTGGAGCCGCCCTTGGTTCTTTTGCTGGTCCTATAGGGGCAT
TTGCAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_041713XLOC_041713Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00066707-proteinTCONS_00066707-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00066707-exon-scaffold_458-1575043694:194230..195324TCONS_00066707-exon-scaffold_458-1575043694:194230..195324Clytia hemisphaericaexon
TCONS_00066707-exon-scaffold_458-1575043694:192824..193540TCONS_00066707-exon-scaffold_458-1575043694:192824..193540Clytia hemisphaericaexon
TCONS_00066707-exon-scaffold_458-1510915933:194230..195324TCONS_00066707-exon-scaffold_458-1510915933:194230..195324Clytia hemisphaericaexon
TCONS_00066707-exon-scaffold_458-1510915933:192824..193540TCONS_00066707-exon-scaffold_458-1510915933:192824..193540Clytia hemisphaericaexon
TCONS_00066707-exon-scaffold_458-1491911889:194230..195324TCONS_00066707-exon-scaffold_458-1491911889:194230..195324Clytia hemisphaericaexon
TCONS_00066707-exon-scaffold_458-1491911889:192824..193540TCONS_00066707-exon-scaffold_458-1491911889:192824..193540Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_458supercontigscaffold_458:192824..195324 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.532223	0.342923	0.0541115	0.174407	0.150147	0.353775	2.05267	2.249	2.54714	9.85619	1.83105	1.76635	7.71658	5.77192	35.3878	26.5202	8.38664	9.8455	11.9047	17.0444	1.13503	1.23988	8.97966	7.60821	8.96194	10.0946	36.0988	40.492	10.7579	9.44856
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001623DnaJ_domain
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00066707 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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