TCONS_00066706 (transcript) - C. hemisphaerica

Overview
NameTCONS_00066706
Unique NameTCONS_00066706
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length833

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00066706 ID=TCONS_00066706|Name=TCONS_00066706|organism=Clytia hemisphaerica|type=transcript|length=833bp
AATATGGCTACTGATGATTTAGACCTAGGaaaagaaataagaaataaaat
ttggGAGCTTTATGCTGATGAGGATGCAGAGACCTGGGCACGAATTACTT
ATTACCTGGATGAAGAAGAGAGAGTTTACAGTGGAGAAAATTCTCCTGTT
TGGAAAACATTGAAACAAGCTTTAAAGTCCGacaaaatattcaaagtttA
TGTCAATCGGCTGGCAGAAGATACTAAAAGAGCAGAGAAAGATGAAGAGT
TCCGAAAAGTCATGCAGAAGATGTATCAAATGTTGGCCGAACCGAGTGAA
AACGGAGAGCCTTGTAAATTGCAATTGGTTCCATCGGAAACGCGGGTCGG
TGCTGTATTTCCGGGTCTAGCTGCAATGATTGCTGTAAATGGTAAGAAAG
TGTTACCAGTTATCGTCAAAGCCGTCAAGGCGATTGGTGAGAGAAATATG
ATGGCGGTGGTAGATGATGCTGCCGGTGTTTTTTCCAAACATGGTGGCGC
CTTGGTAACTGTGGTCTTGTCTGGCGTGTATCTTTCTTTTGTTGCTTTGA
GAAATATTTACAAATGGTGGAGAGGAGAAATTTCAGGAAAACGTTGCGCT
AAATCGATCATTGATACTGCTGGCTCTGTAACTGGCGCAGTTACCTTTGG
TATGTGTGGAACGGCGATCGGTGCTGCTGCTGGTGGACCAATAGGGGCAT
TAGTAGGTGGAATACTGGGATCACTCCTTGGAAACTATCTTGCAGGTCAA
CTAACTGAACAAATAACAGAAACAATATTTGACCTACCGTACGACGTAGC
TTTGGAAAAATCTTATGATTATTTAGGTAAGAA
Run BLAST on NCBI

protein sequence of TCONS_00066706-protein

>TCONS_00066706-protein ID=TCONS_00066706-protein|Name=TCONS_00066706-protein|organism=Clytia hemisphaerica|type=polypeptide|length=277bp
NMATDDLDLGKEIRNKIWELYADEDAETWARITYYLDEEERVYSGENSPV
WKTLKQALKSDKIFKVYVNRLAEDTKRAEKDEEFRKVMQKMYQMLAEPSE
NGEPCKLQLVPSETRVGAVFPGLAAMIAVNGKKVLPVIVKAVKAIGERNM
MAVVDDAAGVFSKHGGALVTVVLSGVYLSFVALRNIYKWWRGEISGKRCA
KSIIDTAGSVTGAVTFGMCGTAIGAAAGGPIGALVGGILGSLLGNYLAGQ
LTEQITETIFDLPYDVALEKSYDYLGK
Run BLAST on NCBI

transcript from alignment at scaffold_458:190929..192008-

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00066706 ID=TCONS_00066706|Name=TCONS_00066706|organism=Clytia hemisphaerica|type=transcript|length=1080bp|location=Sequence derived from alignment at scaffold_458:190929..192008- (Clytia hemisphaerica)
AATATGGCTACTGATGATTTAGACCTAGGAAAAGAAATAAGAAATAAAAT
TTGGGAGCTTTATGCTGATGAGGATGCAGAGACCTGGGCACGAATTACTT
ATTACCTGGATGAAGAAGAGAGAGTTTACAGTGGAGAAAATTCTCCTGTT
TGGAAAACATTGAAACAAGCTTTAAAGTCCGACAAAATATTCAAAGTTTA
TGTCAATCGGCTGGCAGAAGATACTAAAAGAGCAGAGAAAGATGAAGAGT
TCCGAAAAGTCATGCAGAAGATGTATCAAATGTTGGCCGAACCGAGTGAA
AACGGAGAGCCTTGTAAATTGCAATTGGTTCCATCGGAAACGCGGGTCGG
TGCTGTATTTCCGGGTCTAGCTGCAATGATTGCTGTAAATGGTAAGAAAG
TGTTACCAGTTATCGTCAAAGCCGTCAAGGCGATTGGTGAGAGAAATATG
ATGGCGGTGGTAGATGATGCTGCCGGTGTTTTTTCCAAACATGGTGGCGC
CTTGGTAACTGTGGTCTTGTCTGGCGTGTATCTTTCTTTTGTTGCTTTGA
GAAATATTTACAAATGGTGGAGAGGAGAAATTTCAGGAAAACGTTGCGCT
AAATCGATCATTGATACTGCTGGCTCTGTAACTGGCGCAGTTACCTTTGG
TATGTGTGGAACGGCGATCGGTGCTGCTGCTGGTGGACCAATAGGGGCAT
TAGTAGGTGAGTAGCCCAGTATGCTTTTCATTTAAGTATTTAAGTCTTTA
GCTATAGAAAATTAAGAATTTAAAGAATTACAAGAACATCAAAAGATCAT
ATTTTTAGCTACATCGGATCCAAATTTGACCAGAATCTTCGATAGCCATA
CTTGACGCTAAATAGAGATAAGATTTGTTCTTCCTAAAACAGTTATAAGC
GAGCTGATTTTCTCTAAAATTACAAAGGTGGTATTTCTAATTTATCGTTA
TAGGTGGAATACTGGGATCACTCCTTGGAAACTATCTTGCAGGTCAACTA
ACTGAACAAATAACAGAAACAATATTTGACCTACCGTACGACGTAGCTTT
GGAAAAATCTTATGATTATTTAGGTAAGAA

Coding sequence (CDS) from alignment at scaffold_458:190929..192008-

>TCONS_00066706 ID=TCONS_00066706|Name=TCONS_00066706|organism=Clytia hemisphaerica|type=CDS|length=1662bp|location=Sequence derived from alignment at scaffold_458:190929..192008- (Clytia hemisphaerica)
GTGGAATACTGGGATCACTCCTTGGAAACTATCTTGCAGGTCAACTAACT
GAACAAATAACAGAAACAATATTTGACCTACCGTACGACGTAGCTTTGGA
AAAATCTTATGATTATTTAGGTAAGAATATGGCTACTGATGATTTAGACC
TAGGAAAAGAAATAAGAAATAAAATTTGGGAGCTTTATGCTGATGAGGAT
GCAGAGACCTGGGCACGAATTACTTATTACCTGGATGAAGAAGAGAGAGT
TTACAGTGGAGAAAATTCTCCTGTTTGGAAAACATTGAAACAAGCTTTAA
AGTCCGACAAAATATTCAAAGTTTATGTCAATCGGCTGGCAGAAGATACT
AAAAGAGCAGAGAAAGATGAAGAGTTCCGAAAAGTCATGCAGAAGATGTA
TCAAATGTTGGCCGAACCGAGTGAAAACGGAGAGCCTTGTAAATTGCAAT
TGGTTCCATCGGAAACGCGGGTCGGTGCTGTATTTCCGGGTCTAGCTGCA
ATGATTGCTGTAAATGGTAAGAAAGTGTTACCAGTTATCGTCAAAGCCGT
CAAGGCGATTGGTGAGAGAAATATGATGGCGGTGGTAGATGATGCTGCCG
GTGTTTTTTCCAAACATGGTGGCGCCTTGGTAACTGTGGTCTTGTCTGGC
GTGTATCTTTCTTTTGTTGCTTTGAGAAATATTTACAAATGGTGGAGAGG
AGAAATTTCAGGAAAACGTTGCGCTAAATCGATCATTGATACTGCTGGCT
CTGTAACTGGCGCAGTTACCTTTGGTATGTGTGGAACGGCGATCGGTGCT
GCTGCTGGTGGACCAATAGGGGCATTAGTAGGTGGAATACTGGGATCACT
CCTTGGAAACTATCTTGCAGGTCAACTAACTGAACAAATAACAGAAACAA
TATTTGACCTACCGTACGACGTAGCTTTGGAAAAATCTTATGATTATTTA
GGTAAGAATATGGCTACTGATGATTTAGACCTAGGAAAAGAAATAAGAAA
TAAAATTTGGGAGCTTTATGCTGATGAGGATGCAGAGACCTGGGCACGAA
TTACTTATTACCTGGATGAAGAAGAGAGAGTTTACAGTGGAGAAAATTCT
CCTGTTTGGAAAACATTGAAACAAGCTTTAAAGTCCGACAAAATATTCAA
AGTTTATGTCAATCGGCTGGCAGAAGATACTAAAAGAGCAGAGAAAGATG
AAGAGTTCCGAAAAGTCATGCAGAAGATGTATCAAATGTTGGCCGAACCG
AGTGAAAACGGAGAGCCTTGTAAATTGCAATTGGTTCCATCGGAAACGCG
GGTCGGTGCTGTATTTCCGGGTCTAGCTGCAATGATTGCTGTAAATGGTA
AGAAAGTGTTACCAGTTATCGTCAAAGCCGTCAAGGCGATTGGTGAGAGA
AATATGATGGCGGTGGTAGATGATGCTGCCGGTGTTTTTTCCAAACATGG
TGGCGCCTTGGTAACTGTGGTCTTGTCTGGCGTGTATCTTTCTTTTGTTG
CTTTGAGAAATATTTACAAATGGTGGAGAGGAGAAATTTCAGGAAAACGT
TGCGCTAAATCGATCATTGATACTGCTGGCTCTGTAACTGGCGCAGTTAC
CTTTGGTATGTGTGGAACGGCGATCGGTGCTGCTGCTGGTGGACCAATAG
GGGCATTAGTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_041712XLOC_041712Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00066706-proteinTCONS_00066706-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00066706-exon-scaffold_458-1575043694:191303..192008TCONS_00066706-exon-scaffold_458-1575043694:191303..192008Clytia hemisphaericaexon
TCONS_00066706-exon-scaffold_458-1575043694:190929..191055TCONS_00066706-exon-scaffold_458-1575043694:190929..191055Clytia hemisphaericaexon
TCONS_00066706-exon-scaffold_458-1510915933:191303..192008TCONS_00066706-exon-scaffold_458-1510915933:191303..192008Clytia hemisphaericaexon
TCONS_00066706-exon-scaffold_458-1510915933:190929..191055TCONS_00066706-exon-scaffold_458-1510915933:190929..191055Clytia hemisphaericaexon
TCONS_00066706-exon-scaffold_458-1491911889:191303..192008TCONS_00066706-exon-scaffold_458-1491911889:191303..192008Clytia hemisphaericaexon
TCONS_00066706-exon-scaffold_458-1491911889:190929..191055TCONS_00066706-exon-scaffold_458-1491911889:190929..191055Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_458supercontigscaffold_458:190929..192008 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0568554	0.166329	0.0643745	0.188941	0.996744	0.181763	6.3594	6.22732	9.67801	24.391	5.93302	5.37688	19.587	16.3359	82.3574	56.3691	20.8284	20.8235	23.5106	30.2941	1.09942	1.20658	5.93222	7.05271	11.5982	14.2736	48.0233	40.5189	10.9803	9.83699
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00066706 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top