Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00066650 ID=TCONS_00066650|Name=TCONS_00066650|organism=Clytia hemisphaerica|type=transcript|length=865bpRun BLAST on NCBI protein sequence of TCONS_00066650-protein >TCONS_00066650-protein ID=TCONS_00066650-protein|Name=TCONS_00066650-protein|organism=Clytia hemisphaerica|type=polypeptide|length=209bp MGNGMNKIMPGLYLGNFRDAKDQKQLDENKITHIVAIHDQPKPILDNIQYRun BLAST on NCBI transcript from alignment at scaffold_457:166811..185412- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00066650 ID=TCONS_00066650|Name=TCONS_00066650|organism=Clytia hemisphaerica|type=transcript|length=18602bp|location=Sequence derived from alignment at scaffold_457:166811..185412- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_457:166811..185412- >TCONS_00066650 ID=TCONS_00066650|Name=TCONS_00066650|organism=Clytia hemisphaerica|type=CDS|length=5040bp|location=Sequence derived from alignment at scaffold_457:166811..185412- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2 Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00066650 vs. Swiss-Prot (Human)
Match: DUS22 (Dual specificity protein phosphatase 22 OS=Homo sapiens GN=DUSP22 PE=1 SV=1) HSP 1 Score: 179.489 bits (454), Expect = 5.780e-55 Identity = 86/170 (50.59%), Postives = 118/170 (69.41%), Query Frame = 3 Query: 150 MGNGMNKIMPGLYLGNFRDAKDQKQLDENKITHIVAIHDQPKPILDNIQYKNIDAADSANEKLNIYFEDCAQFIHRARLEGGNVLVHCIAGISRSTTICCAYIMIISGVHWSDAILACRKARSQVNPNYGFQRQLQEFEA-KITKVRQDLIQTVG--PLN--EEDKKFLT 644 MGNGMNKI+PGLY+GNF+DA+D +QL +NK+THI+++HD +P+L+ ++Y I AADS ++ L +F++ +FIH RL G + LVHC+AG+SRS T+ AYIM ++ W DA+ R RS NPN GFQRQLQEFE ++ + RQ L + G PL EE K L Sbjct: 1 MGNGMNKILPGLYIGNFKDARDAEQLSKNKVTHILSVHDSARPMLEGVKYLCIPAADSPSQNLTRHFKESIKFIHECRLRGESCLVHCLAGVSRSVTLVIAYIMTVTDFGWEDALHTVRAGRSCANPNVGFQRQLQEFEKHEVHQYRQWLKEEYGESPLQDAEEAKNILA 170 The following BLAST results are available for this feature:
BLAST of TCONS_00066650 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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