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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00066617 ID=TCONS_00066617|Name=TCONS_00066617|organism=Clytia hemisphaerica|type=transcript|length=997bp
gaaataaattaaataacaaattttatgaGATGGCAATAACTCTCGAAGAT
GTGGTTGGTATCGTTGAAAAAGCAAAGCAAAAGCTCGATGTTTTGTTCGT
CTCTGTACAAATGCCTGAATCTCATGGTTTAACTCATTGTCTCATTGTAC
TGGGAAATATGAACAACGCTATCAGTCGTGCTCCAAAAGACCTTTGCCAT
CTCCTAACCCCGGAGAAAATTTTGACGTTGAGGCTTGCTGCCTTACTTCA
CGAAGCTGATGACCACAAGTTTTTCAAAGCAAGTGTCGATTTTGAAAATG
CGCAACAGATTTGTGAAGAAGTTATCCCTGtgaatgttgaaaataagaaa
aaaatcattacgGATGTAGTTAAGATGATCTCCTATGTTTCTGCATCAGT
TAATGGGAACAGTGTACCGGGAGATGCCAAAGCTGACCCCACCTTTCTAT
GGCCACGTTATTGCGACAGGCTAGAATCTATTGGTGTGATAGGAGCTGTT
AGGTGTTATCAATATAACACAGAGGTAGGGGCACCCCTGATGGTAGCATC
TACTCCTCGTCCAGCTACAGTGTCAGAACTATGGGACCAAGTCAAAGAAG
AAAGATGGAAGCAGTACCAAAATGGAGGGAATAGTCAAAGTATGATGGAT
CATTATTATGATAAACTTCTTCATATTGCTAAACTGGATCCAGAAGTTGT
GAGAAATGATTTTCTAGTAGAGGAAGCTAATGAAAGAGTCCAACCTTTGA
TTGATATTTGCTTGGAATCAGGAAGGACTGGCAAAGCACCTGTAGAATCT
CTAATGAAACTTGAAAAATCGTTGACTTGAGAAAATGAAGACGACTCAgg
aaaatagtatttttagatttatgttatacgtttttgttatttttaggtTA
TTATATGACAATGAAAAgatatgcaaaaatatttgtGCCGAggtcaaata
ttttgtctatttttatttttcgttatCATGGAGATGTTTTATCTTTG Run BLAST on NCBI protein sequence of TCONS_00066617-protein >TCONS_00066617-protein ID=TCONS_00066617-protein|Name=TCONS_00066617-protein|organism=Clytia hemisphaerica|type=polypeptide|length=275bp
NKLNNKFYEMAITLEDVVGIVEKAKQKLDVLFVSVQMPESHGLTHCLIVL
GNMNNAISRAPKDLCHLLTPEKILTLRLAALLHEADDHKFFKASVDFENA
QQICEEVIPVNVENKKKIITDVVKMISYVSASVNGNSVPGDAKADPTFLW
PRYCDRLESIGVIGAVRCYQYNTEVGAPLMVASTPRPATVSELWDQVKEE
RWKQYQNGGNSQSMMDHYYDKLLHIAKLDPEVVRNDFLVEEANERVQPLI
DICLESGRTGKAPVESLMKLEKSLT Run BLAST on NCBI transcript from alignment at scaffold_456:544911..545907 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00066617 ID=TCONS_00066617|Name=TCONS_00066617|organism=Clytia hemisphaerica|type=transcript|length=997bp|location=Sequence derived from alignment at scaffold_456:544911..545907 (Clytia hemisphaerica)
CAAAGATAAAACATCTCCATGataacgaaaaataaaaatagacaaaatat
ttgaccTCGGCacaaatatttttgcatatcTTTTCATTGTCATATAATAa
cctaaaaataacaaaaacgtataacataaatctaaaaatactattttccT
GAGTCGTCTTCATTTTCTCAAGTCAACGATTTTTCAAGTTTCATTAGAGA
TTCTACAGGTGCTTTGCCAGTCCTTCCTGATTCCAAGCAAATATCAATCA
AAGGTTGGACTCTTTCATTAGCTTCCTCTACTAGAAAATCATTTCTCACA
ACTTCTGGATCCAGTTTAGCAATATGAAGAAGTTTATCATAATAATGATC
CATCATACTTTGACTATTCCCTCCATTTTGGTACTGCTTCCATCTTTCTT
CTTTGACTTGGTCCCATAGTTCTGACACTGTAGCTGGACGAGGAGTAGAT
GCTACCATCAGGGGTGCCCCTACCTCTGTGTTATATTGATAACACCTAAC
AGCTCCTATCACACCAATAGATTCTAGCCTGTCGCAATAACGTGGCCATA
GAAAGGTGGGGTCAGCTTTGGCATCTCCCGGTACACTGTTCCCATTAACT
GATGCAGAAACATAGGAGATCATCTTAACTACATCcgtaatgattttttt
cttattttcaacattcaCAGGGATAACTTCTTCACAAATCTGTTGCGCAT
TTTCAAAATCGACACTTGCTTTGAAAAACTTGTGGTCATCAGCTTCGTGA
AGTAAGGCAGCAAGCCTCAACGTCAAAATTTTCTCCGGGGTTAGGAGATG
GCAAAGGTCTTTTGGAGCACGACTGATAGCGTTGTTCATATTTCCCAGTA
CAATGAGACAATGAGTTAAACCATGAGATTCAGGCATTTGTACAGAGACG
AACAAAACATCGAGCTTTTGCTTTGCTTTTTCAACGATACCAACCACATC
TTCGAGAGTTATTGCCATCtcataaaatttgttatttaatttatttc Coding sequence (CDS) from alignment at scaffold_456:544911..545907 >TCONS_00066617 ID=TCONS_00066617|Name=TCONS_00066617|organism=Clytia hemisphaerica|type=CDS|length=828bp|location=Sequence derived from alignment at scaffold_456:544911..545907 (Clytia hemisphaerica)
TCAAGTCAACGATTTTTCAAGTTTCATTAGAGATTCTACAGGTGCTTTGC
CAGTCCTTCCTGATTCCAAGCAAATATCAATCAAAGGTTGGACTCTTTCA
TTAGCTTCCTCTACTAGAAAATCATTTCTCACAACTTCTGGATCCAGTTT
AGCAATATGAAGAAGTTTATCATAATAATGATCCATCATACTTTGACTAT
TCCCTCCATTTTGGTACTGCTTCCATCTTTCTTCTTTGACTTGGTCCCAT
AGTTCTGACACTGTAGCTGGACGAGGAGTAGATGCTACCATCAGGGGTGC
CCCTACCTCTGTGTTATATTGATAACACCTAACAGCTCCTATCACACCAA
TAGATTCTAGCCTGTCGCAATAACGTGGCCATAGAAAGGTGGGGTCAGCT
TTGGCATCTCCCGGTACACTGTTCCCATTAACTGATGCAGAAACATAGGA
GATCATCTTAACTACATCcgtaatgatttttttcttattttcaacattca
CAGGGATAACTTCTTCACAAATCTGTTGCGCATTTTCAAAATCGACACTT
GCTTTGAAAAACTTGTGGTCATCAGCTTCGTGAAGTAAGGCAGCAAGCCT
CAACGTCAAAATTTTCTCCGGGGTTAGGAGATGGCAAAGGTCTTTTGGAG
CACGACTGATAGCGTTGTTCATATTTCCCAGTACAATGAGACAATGAGTT
AAACCATGAGATTCAGGCATTTGTACAGAGACGAACAAAACATCGAGCTT
TTGCTTTGCTTTTTCAACGATACCAACCACATCTTCGAGAGTTATTGCCA
TCtcataaaatttgttatttaatttatt
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00066617-exon-scaffold_456-1491911889:544911..545907 | TCONS_00066617-exon-scaffold_456-1491911889:544911..545907 | Clytia hemisphaerica | exon |
| TCONS_00066617-exon-scaffold_456-1510915933:544911..545907 | TCONS_00066617-exon-scaffold_456-1510915933:544911..545907 | Clytia hemisphaerica | exon |
| TCONS_00066617-exon-scaffold_456-1575043694:544911..545907 | TCONS_00066617-exon-scaffold_456-1575043694:544911..545907 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_456 | supercontig | scaffold_456:544911..545907 . |
Blast
The following BLAST results are available for this feature:
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