TCONS_00066614 (transcript) - C. hemisphaerica

Overview
NameTCONS_00066614
Unique NameTCONS_00066614
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length781

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00066614 ID=TCONS_00066614|Name=TCONS_00066614|organism=Clytia hemisphaerica|type=transcript|length=781bp
aaggaaatttcagttggccggtaTTTTTTTGAGGGCAACGAAAATAATTT
GAGCAGGGGGTCTGGCAGAACACCATTAGAAAAGTCTGAAATGACCTTTA
CATTGGCTAAACACCTGtattaattcaaaatctattCTTCTTTTAATTGG
AAACGTTATTAAGTATTTATCTAAGCCTCTAGTCTTtaaattttaaccgg
acaaaatgaaagattgagcttcagaatggccggtagaaactacgaaatga
ccggtaattaccggtcagcggccgttatttgcagcactggcGAGATTTTT
AAACAAACGACTCAGCAGATATTATTAAACGATATGTCACGTAAAACGAG
GAATTCTGTGAAAGCTTAAATGCTACTAATAAATTGTGTGTATGTGTGCA
TATGTATATAATAATGTCTAttaaaaataaatctaaaattaattgaaaat
acGCTCACTCCTACAAAAATATCTGTGGCATCTCAGTAGTTTCCAAATAA
AAACTAAACTGAACAAAAgtaaaacaacagaaaaaatactctaaaaagaT
ATCATCTTTCGGGAGGAAAGAGCTCTCGCATCTCTCATACTAATAATGCA
AAATTAACAAAGATTTTCTTAAAACTTGTGCCTATCTGATATTAAATGAT
TGATGGTCGACCTTTGATGTGTCGCATCCCAAGTCGGGTTTAGCTACCCT
TGTGtgtaaacctaaaaatattCGGTAGGCCCGCCAATCTCCGAAAACGA
GGGCTTGGTTACCaggcctcccgctgcaaaa
Run BLAST on NCBI

transcript from alignment at scaffold_456:525854..526634

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00066614 ID=TCONS_00066614|Name=TCONS_00066614|organism=Clytia hemisphaerica|type=transcript|length=781bp|location=Sequence derived from alignment at scaffold_456:525854..526634 (Clytia hemisphaerica)
ttttgcagcgggaggcctGGTAACCAAGCCCTCGTTTTCGGAGATTGGCG
GGCCTACCGaatatttttaggtttacaCACAAGGGTAGCTAAACCCGACT
TGGGATGCGACACATCAAAGGTCGACCATCAATCATTTAATATCAGATAG
GCACAAGTTTTAAGAAAATCTTTGTTAATTTTGCATTATTAGTATGAGAG
ATGCGAGAGCTCTTTCCTCCCGAAAGATGATAtctttttagagtattttt
tctgttgttttacTTTTGTTCAGTTTAGTTTTTATTTGGAAACTACTGAG
ATGCCACAGATATTTTTGTAGGAGTGAGCgtattttcaattaattttaga
tttatttttaaTAGACATTATTATATACATATGCACACATACACACAATT
TATTAGTAGCATTTAAGCTTTCACAGAATTCCTCGTTTTACGTGACATAT
CGTTTAATAATATCTGCTGAGTCGTTTGTTTAAAAATCTCgccagtgctg
caaataacggccgctgaccggtaattaccggtcatttcgtagtttctacc
ggccattctgaagctcaatctttcattttgtccggttaaaatttaAAGAC
TAGAGGCTTAGATAAATACTTAATAACGTTTCCAATTAAAAGAAGaatag
attttgaattaataCAGGTGTTTAGCCAATGTAAAGGTCATTTCAGACTT
TTCTAATGGTGTTCTGCCAGACCCCCTGCTCAAATTATTTTCGTTGCCCT
CAAAAAAAtaccggccaactgaaatttcctt
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_041663XLOC_041663Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00066614-exon-scaffold_456-1491911889:525854..526634TCONS_00066614-exon-scaffold_456-1491911889:525854..526634Clytia hemisphaericaexon
TCONS_00066614-exon-scaffold_456-1510915933:525854..526634TCONS_00066614-exon-scaffold_456-1510915933:525854..526634Clytia hemisphaericaexon
TCONS_00066614-exon-scaffold_456-1575043694:525854..526634TCONS_00066614-exon-scaffold_456-1575043694:525854..526634Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_456supercontigscaffold_456:525854..526634 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.84448	1.15203	1.12733	1.84472	1.31466	0.757202	0.93094	1.98568	0.947187	1.00737	0.914626	1.27731	2.27876	0.960405	1.36029	1.5505	1.32082	1.10847	3.66288	1.80644	1.934	1.67809	1.60479	1.81032	0.766793	1.35901	1.72071	2.10537	0.894944	0.847372
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00066614 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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