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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00066604 ID=TCONS_00066604|Name=TCONS_00066604|organism=Clytia hemisphaerica|type=transcript|length=2012bp
ATAATCTAGGGTGAAAAGTGACAAAAACTGGCAATTATGataattgttat
tatttttccaCGTTGTTAAAAATGGTCTCTCCTTATCTCCTTCAATCCTA
AATCTAAGCATATTATTGTAACTCAACAAATGATACTTTGTTCACTTGCT
GATTTGCTGTCTCCCTAGACCATTGATCAAATTACAATCATATGACAAAG
CTTATTTCATGATTATACAAAACAAACATCTTGAAAGAAAGAAGTGTGTA
CAAATGCGTTAGAATGTAAAGTCAAAAGTGATAGATTCAAAATGCTGATC
TGTTAATTGAAACAAAGTATGAAAAAAGTGTGATTACTGTTGATTAATAA
TATTGACAATTAAAGATGCATTAACAACAATGTCTAAAACGACATTACAC
AAGTAAAACAAATCAACTAAAGATTATGAGCACATCAAACTCATattaaa
aaaagagaatttcttttataaacatGTCACAAGTGAAATCATCTGAATTG
AAATCAGAAAGTAACAATTTCAATAAACTGCAGCATAAATAGATTTACCA
GGATCAACAAGACGAGAACATCCACTAGCAAAGAAAATTTGATCAGTGCA
CAGATGAGAAACATGTTAAATGACAAATTATTTCAAAGCACTTGTTTTTA
TTACTCCATTTATTGTACAATCCAAGTAAAAGTTTAAGCTAAAACAAAAT
TAGCTTCACTTTGAGCAATTTAAACAAAGCAAACTTTGATTACCCTCATC
ATTACCTGGCATATAATATGTGCTGATGATGGAGACCAAAAAACTATGGA
ATCTTGACTGTAAACATGTGTATTTCACGATAATCCTTGACATTTTGACT
AATTTCAATTTAGTAGGTACTGCCATTCCTGAGGAAGGAATACGTTACAT
CGCGTTCATTATAGAATATGTACTCATTTAATTCATATTATACACCATAC
AACCATAAGAAACATTTCATGTTCACTTGATCAAATAACATTTTAAATCT
TGAAAGCTATTAAAATGGCACACTCAAATACAGTAATACAGAATTGACAT
CGTTTTACCAAGATGACATTAAAGTCTCAAACTCATATATAGTGCAGTCC
TTTTACACCAGTCCATGAATTCCCTACTAGCTCTGATTTTTAAGCGCAAG
GTAACAAGAAGTtttaaagtagctttaaaagaATAGATAACTaataattt
agttttttttcctttttatggTCATGCAACAATATTTTCCAGTAAAGTTT
GATTGTGTTCCATAGGCAATTTTTCACTGGCGAAAATCAAAGATTGATGC
TGCGAAAACACTTTAATATTTACTTGATTTGGAAGCAAAGAATTCACCGC
AAAACTTCTGGAAGTAACAGGAATCAAAGCCTAAAATCAAAACGCTATCT
TGGTCATTAAATAACAAATTCTAAATTGTTTGATTATCTTGCTGCTGCAC
GTTAGTAATCAATAATcagtcatttttaattttcttctccATTTTCGAGG
AGGGCAAGTTGGGGGAAGGTTGAAAATGGCGCCAAGATGTAGCTCATGAA
AGCTGCCATTTGATTGTTATTTGCAAACTTTGAAAGCCCTAGAGTAAGCT
GGTCTAATGCCAACATCAACTTCTAATTCCAACAGCCTTCTTTAGAGATA
ATAGGAAGATCAGAATCAATGATAACCAGACTCTACCACTCAATGCAACC
AATAACGTTTTCCTTGATTGGATATCGATTGATTCTGATAATCAATGGAC
ATTTGATAATCAGGATTTTAAGTGAGGTTGGTGTCTTCTcccctgtagat
ctttttcttgggacgGCCCTGCTGACATACCAACTTTACGAATACCGGAC
ACGCAAAGACTGGTGTTGGATGAGGATACTTTTTAACACTGGACAATCTC
AACGTCCGGTGCGCATTATTTTTGTCCAGAAGTTCGAAAAATTAGCACCG
GAACTAACActggacaaaaggtttccaGTGTGGCTGAGGGATAGTTCTTG
GCACCAGACAAA Run BLAST on NCBI transcript from alignment at scaffold_456:303115..305126 Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00066604 ID=TCONS_00066604|Name=TCONS_00066604|organism=Clytia hemisphaerica|type=transcript|length=2012bp|location=Sequence derived from alignment at scaffold_456:303115..305126 (Clytia hemisphaerica)
TTTGTCTGGTGCCAAGAACTATCCCTCAGCCACACtggaaaccttttgtc
cagTGTTAGTTCCGGTGCTAATTTTTCGAACTTCTGGACAAAAATAATGC
GCACCGGACGTTGAGATTGTCCAGTGTTAAAAAGTATCCTCATCCAACAC
CAGTCTTTGCGTGTCCGGTATTCGTAAAGTTGGTATGTCAGCAGGGCcgt
cccaagaaaaagatctacaggggAGAAGACACCAACCTCACTTAAAATCC
TGATTATCAAATGTCCATTGATTATCAGAATCAATCGATATCCAATCAAG
GAAAACGTTATTGGTTGCATTGAGTGGTAGAGTCTGGTTATCATTGATTC
TGATCTTCCTATTATCTCTAAAGAAGGCTGTTGGAATTAGAAGTTGATGT
TGGCATTAGACCAGCTTACTCTAGGGCTTTCAAAGTTTGCAAATAACAAT
CAAATGGCAGCTTTCATGAGCTACATCTTGGCGCCATTTTCAACCTTCCC
CCAACTTGCCCTCCTCGAAAATggagaagaaaattaaaaatgactgATTA
TTGATTACTAACGTGCAGCAGCAAGATAATCAAACAATTTAGAATTTGTT
ATTTAATGACCAAGATAGCGTTTTGATTTTAGGCTTTGATTCCTGTTACT
TCCAGAAGTTTTGCGGTGAATTCTTTGCTTCCAAATCAAGTAAATATTAA
AGTGTTTTCGCAGCATCAATCTTTGATTTTCGCCAGTGAAAAATTGCCTA
TGGAACACAATCAAACTTTACTGGAAAATATTGTTGCATGAccataaaaa
ggaaaaaaaactaaattattAGTTATCTATtcttttaaagctactttaaa
ACTTCTTGTTACCTTGCGCTTAAAAATCAGAGCTAGTAGGGAATTCATGG
ACTGGTGTAAAAGGACTGCACTATATATGAGTTTGAGACTTTAATGTCAT
CTTGGTAAAACGATGTCAATTCTGTATTACTGTATTTGAGTGTGCCATTT
TAATAGCTTTCAAGATTTAAAATGTTATTTGATCAAGTGAACATGAAATG
TTTCTTATGGTTGTATGGTGTATAATATGAATTAAATGAGTACATATTCT
ATAATGAACGCGATGTAACGTATTCCTTCCTCAGGAATGGCAGTACCTAC
TAAATTGAAATTAGTCAAAATGTCAAGGATTATCGTGAAATACACATGTT
TACAGTCAAGATTCCATAGTTTTTTGGTCTCCATCATCAGCACATATTAT
ATGCCAGGTAATGATGAGGGTAATCAAAGTTTGCTTTGTTTAAATTGCTC
AAAGTGAAGCTAATTTTGTTTTAGCTTAAACTTTTACTTGGATTGTACAA
TAAATGGAGTAATAAAAACAAGTGCTTTGAAATAATTTGTCATTTAACAT
GTTTCTCATCTGTGCACTGATCAAATTTTCTTTGCTAGTGGATGTTCTCG
TCTTGTTGATCCTGGTAAATCTATTTATGCTGCAGTTTATTGAAATTGTT
ACTTTCTGATTTCAATTCAGATGATTTCACTTGTGACatgtttataaaag
aaattctctttttttaatATGAGTTTGATGTGCTCATAATCTTTAGTTGA
TTTGTTTTACTTGTGTAATGTCGTTTTAGACATTGTTGTTAATGCATCTT
TAATTGTCAATATTATTAATCAACAGTAATCACACTTTTTTCATACTTTG
TTTCAATTAACAGATCAGCATTTTGAATCTATCACTTTTGACTTTACATT
CTAACGCATTTGTACACACTTCTTTCTTTCAAGATGTTTGTTTTGTATAA
TCATGAAATAAGCTTTGTCATATGATTGTAATTTGATCAATGGTCTAGGG
AGACAGCAAATCAGCAAGTGAACAAAGTATCATTTGTTGAGTTACAATAA
TATGCTTAGATTTAGGATTGAAGGAGATAAGGAGAGACCATTTTTAACAA
CGtggaaaaataataacaattatCATAATTGCCAGTTTTTGTCACTTTTC
ACCCTAGATTAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00066604-exon-scaffold_456-1491911889:303115..305126 | TCONS_00066604-exon-scaffold_456-1491911889:303115..305126 | Clytia hemisphaerica | exon |
| TCONS_00066604-exon-scaffold_456-1510915933:303115..305126 | TCONS_00066604-exon-scaffold_456-1510915933:303115..305126 | Clytia hemisphaerica | exon |
| TCONS_00066604-exon-scaffold_456-1575043694:303115..305126 | TCONS_00066604-exon-scaffold_456-1575043694:303115..305126 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_456 | supercontig | scaffold_456:303115..305126 . |
Blast
The following BLAST results are available for this feature:
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