TCONS_00066601 (transcript) - C. hemisphaerica

Overview
NameTCONS_00066601
Unique NameTCONS_00066601
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length398

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00066601 ID=TCONS_00066601|Name=TCONS_00066601|organism=Clytia hemisphaerica|type=transcript|length=398bp
TAGCGTGTCACACCCAATCCTATTAAAGAAAATGAGTGCTTCTGGAATAT
CTGGAGATTTTCTCTCATACCTAACGAGCTACCTTAGTAACAGAAAGCAA
TTCACATCACTAAATGGAATCGAATCCAACCTTGAAAGAGTCGAATATGG
TGTTCCGCAAGGATCTCTAATTGGACCACCAAGTTTTTCTATCAACGTGA
ACGATATGAGTGATTGTATTGAAAGTGATTTAGACCAGCTTGCAGATGAT
TCAACAACCTATACTACTGGACCAACTGCTGATGATGTTCTTGACAGCCT
ACAAAACAGTGCTTGTCAATTAGAGAGTTATGCCAAACGAAACTCCTTAA
CGATTCACCCTGATAAATGCAAAATCTTGGTCATGTCAAGAAATCGTT
Run BLAST on NCBI

protein sequence of TCONS_00066601-protein

>TCONS_00066601-protein ID=TCONS_00066601-protein|Name=TCONS_00066601-protein|organism=Clytia hemisphaerica|type=polypeptide|length=132bp
SVSHPILLKKMSASGISGDFLSYLTSYLSNRKQFTSLNGIESNLERVEYG
VPQGSLIGPPSFSINVNDMSDCIESDLDQLADDSTTYTTGPTADDVLDSL
QNSACQLESYAKRNSLTIHPDKCKILVMSRNR
Run BLAST on NCBI

transcript from alignment at scaffold_456:279218..279615

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00066601 ID=TCONS_00066601|Name=TCONS_00066601|organism=Clytia hemisphaerica|type=transcript|length=398bp|location=Sequence derived from alignment at scaffold_456:279218..279615 (Clytia hemisphaerica)
AACGATTTCTTGACATGACCAAGATTTTGCATTTATCAGGGTGAATCGTT
AAGGAGTTTCGTTTGGCATAACTCTCTAATTGACAAGCACTGTTTTGTAG
GCTGTCAAGAACATCATCAGCAGTTGGTCCAGTAGTATAGGTTGTTGAAT
CATCTGCAAGCTGGTCTAAATCACTTTCAATACAATCACTCATATCGTTC
ACGTTGATAGAAAAACTTGGTGGTCCAATTAGAGATCCTTGCGGAACACC
ATATTCGACTCTTTCAAGGTTGGATTCGATTCCATTTAGTGATGTGAATT
GCTTTCTGTTACTAAGGTAGCTCGTTAGGTATGAGAGAAAATCTCCAGAT
ATTCCAGAAGCACTCATTTTCTTTAATAGGATTGGGTGTGACACGCTA

Coding sequence (CDS) from alignment at scaffold_456:279218..279615

>TCONS_00066601 ID=TCONS_00066601|Name=TCONS_00066601|organism=Clytia hemisphaerica|type=CDS|length=396bp|location=Sequence derived from alignment at scaffold_456:279218..279615 (Clytia hemisphaerica)
ACGATTTCTTGACATGACCAAGATTTTGCATTTATCAGGGTGAATCGTTA
AGGAGTTTCGTTTGGCATAACTCTCTAATTGACAAGCACTGTTTTGTAGG
CTGTCAAGAACATCATCAGCAGTTGGTCCAGTAGTATAGGTTGTTGAATC
ATCTGCAAGCTGGTCTAAATCACTTTCAATACAATCACTCATATCGTTCA
CGTTGATAGAAAAACTTGGTGGTCCAATTAGAGATCCTTGCGGAACACCA
TATTCGACTCTTTCAAGGTTGGATTCGATTCCATTTAGTGATGTGAATTG
CTTTCTGTTACTAAGGTAGCTCGTTAGGTATGAGAGAAAATCTCCAGATA
TTCCAGAAGCACTCATTTTCTTTAATAGGATTGGGTGTGACACGCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_041650XLOC_041650Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00066601-proteinTCONS_00066601-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00066601-exon-scaffold_456-1491911889:279218..279615TCONS_00066601-exon-scaffold_456-1491911889:279218..279615Clytia hemisphaericaexon
TCONS_00066601-exon-scaffold_456-1510915933:279218..279615TCONS_00066601-exon-scaffold_456-1510915933:279218..279615Clytia hemisphaericaexon
TCONS_00066601-exon-scaffold_456-1575043694:279218..279615TCONS_00066601-exon-scaffold_456-1575043694:279218..279615Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_456supercontigscaffold_456:279218..279615 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.02037	2.39697	4.8758	1.94796	1.06496	0.430028	0.241335	1.12967	1.26546	2.35918	5.19606	4.37128	2.30174	1.78001	2.73899	2.96744	2.19125	2.37047	2.24693	3.66908	4.06813	8.02668	2.17209	2.89354	0.876107	1.07921	3.86632	2.08792	1.60052	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000477RT_dom
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00066601 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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