TCONS_00066599 (transcript) - C. hemisphaerica

Overview
NameTCONS_00066599
Unique NameTCONS_00066599
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length226

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00066599 ID=TCONS_00066599|Name=TCONS_00066599|organism=Clytia hemisphaerica|type=transcript|length=226bp
agaTGAGAAAATGTTTACTGGTTTAAGCTATGAATggtctgaaacaacat
ttttgcaacaaaaactaattgGGTTGAATTTTCGAAGTAAAAagtgttga
ttgttgaagaattgatgctgaaaagGCAAAGACACAGTTTTGTGGAGGAT
TAGGAGAGACACAAGAGACTTTTTACACAAATCCCTCGTTTTACCTGGTT
TATGGTTTAATCAAAGACAAAGATAT
Run BLAST on NCBI

transcript from alignment at scaffold_456:194163..194388

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00066599 ID=TCONS_00066599|Name=TCONS_00066599|organism=Clytia hemisphaerica|type=transcript|length=226bp|location=Sequence derived from alignment at scaffold_456:194163..194388 (Clytia hemisphaerica)
ATATCTTTGTCTTTGATTAAACCATAAACCAGGTAAAACGAGGGATTTGT
GTAAAAAGTCTCTTGTGTCTCTCCTAATCCTCCACAAAACTGTGTCTTTG
CcttttcagcatcaattcttcaacaatcaacactTTTTACTTCGAAAATT
CAACCcaattagtttttgttgcaaaaatgttgtttcagaccATTCATAGC
TTAAACCAGTAAACATTTTCTCAtct
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_041648XLOC_041648Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00066599-exon-scaffold_456-1491911889:194163..194388TCONS_00066599-exon-scaffold_456-1491911889:194163..194388Clytia hemisphaericaexon
TCONS_00066599-exon-scaffold_456-1510915933:194163..194388TCONS_00066599-exon-scaffold_456-1510915933:194163..194388Clytia hemisphaericaexon
TCONS_00066599-exon-scaffold_456-1575043694:194163..194388TCONS_00066599-exon-scaffold_456-1575043694:194163..194388Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_456supercontigscaffold_456:194163..194388 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	1.09779	1.27464	0	4.55444	4.79864	4.34201	6.7749	5.69192	1.17506	7.98379	9.74672	3.74353	4.85841	3.19621	4.80203	5.07061	3.46481	2.39341	3.75679	4.35378	3.18543	0	0	10.8781	10.7871	1.54364	0	1.2495	1.27304
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00066599 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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