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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00066592 ID=TCONS_00066592|Name=TCONS_00066592|organism=Clytia hemisphaerica|type=transcript|length=856bpRun BLAST on NCBI protein sequence of TCONS_00066592-protein >TCONS_00066592-protein ID=TCONS_00066592-protein|Name=TCONS_00066592-protein|organism=Clytia hemisphaerica|type=polypeptide|length=228bp MSSEEYENCLDEFRTYYDQLKSVVKNKLPKLTGEIRKRELRNADRLLEDARun BLAST on NCBI transcript from alignment at scaffold_456:881096..889429- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00066592 ID=TCONS_00066592|Name=TCONS_00066592|organism=Clytia hemisphaerica|type=transcript|length=8334bp|location=Sequence derived from alignment at scaffold_456:881096..889429- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_456:881096..889429- >TCONS_00066592 ID=TCONS_00066592|Name=TCONS_00066592|organism=Clytia hemisphaerica|type=CDS|length=5496bp|location=Sequence derived from alignment at scaffold_456:881096..889429- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00066592 vs. Swiss-Prot (Human)
Match: VTI1B (Vesicle transport through interaction with t-SNAREs homolog 1B OS=Homo sapiens GN=VTI1B PE=1 SV=3) HSP 1 Score: 102.834 bits (255), Expect = 1.417e-25 Identity = 78/230 (33.91%), Postives = 135/230 (58.70%), Query Frame = 3
Query: 54 SGIMSSEEYENCLDEFRTYYDQLKSVVKNKLPKLTGEIRKRELRNADRLLEDAEAQLTQMFEEAQSAPGAYRTSLLSQTRGHKSDLEKLKRELITAKXXXXXXXXXXXRDDLLGYGGTSATSNFESQQRGMMQEGLDIMNRTSDSVARSQRIAAETDEYGVQILADLDDQKESLIRVRDKVKQTDSDLTKSRRIIQSIGVRMITNKXXXXXXXXXXXXXXXXXXYIKYFK 743
S SSE +E + FR ++ L+ V + L E +K+ +R+ D ++A L +M EE + AP ++R ++S+ R ++ DL KL RE+ + T+ + + Y + N QR M+ +G + +NR + S+ RS RIA ETD+ G +I+ +L +Q++ L R + ++ T +L+KSR+I++S+ ++ TNKLLL +II+LE+ ILG +VY K+F+
Sbjct: 3 SSAASSEHFEKLHEIFRGLHEDLQGVPERLLGTAGTEEKKKLIRDFDEKQQEANETLAEMEEELRYAPLSFRNPMMSKLRNYRKDLAKLHREVRSTPLTATPGGRGDMKYGI--YAVENEHMNRLQSQRAMLLQGTESLNRATQSIERSHRIATETDQIGSEIIEELGEQRDQLERTKSRLVNTSENLSKSRKILRSMSRKVTTNKLLLSIIILLELAILGGLVYYKFFR 230 The following BLAST results are available for this feature:
BLAST of TCONS_00066592 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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