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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00066581 ID=TCONS_00066581|Name=TCONS_00066581|organism=Clytia hemisphaerica|type=transcript|length=1169bp
AACAGTATCATAGGAATAAAGTAAATGAAGTTGGATCTTCGGAGCTTCCA
CTGTActgaacgtttttttttttgcaagtcTGATAAATTGGCAGCAAAAG
TTTTACTGGCTCCTTGAGATTCGAGCTTTATTGTGAAGTTCTTCTTATAA
GATATCGTTCGTTGGCTCACTATGGTTTGTTTTATGATTGTATCCGTCTC
TTGAAGATCACTTTATAGTCTGTAGCTGGTGAATACGGTCCTCCTGGTCC
TCGCTCGTCCAACCCCGGTAGCTTCTCTTCAAGATATGGACATATCTCGA
AAGTCCGAATCAATTTCGTCGTGATCAAAAACATTTGAACTTTAGCCATT
TTCTCACCAAGGCAGACTCGAGTTCCAGCTGAAAAAGGCAGATAGTGTGT
TGCTCTTTCCTTCTTTAGACTTCCATCAGCATTTAACCAGCGGTGGGGGT
TGAACTCGTGCGGTTTTTCCCAATGATTCTCGTCATAGTGAAGACTGTAT
AGGTTAAACAGTATTGGAGCTCCTTTTGGAATGTTGATTCCATTGATTGA
TGTATCCACCATGGCTTTATGTGCAACATTGATTCTAGCAATTGAAGATT
TTCGATTGGTTTCAAACAGCATTGCTTGGGTGAACGGCAAAGAGTCCAGA
TCTGAATAAGTTAGACGGTGTCTCAAACCAAATGTCTCCACAATTTCGTC
ATGCATTTTCTTTTGGTATTCTGGGTGGTGTAGGCAATACAGGAAAAACC
AACGAAGTGTTGTAAGAGAAGTTTCAATGCCggcaaaaaacaaaatattg
actGTATTTTCGAGATGGTCTTGAGAAACTTCTTCGAAGCCGGCATCTTT
CCATGCTTCTTTGTTTGAGGATAGAAAGAGAAGTTGATCAGTTACATCTC
GAAGGTTGTCTGGATTCAAGGTTGTCTTGTGTTCCTCGAACATTCGATGA
GTCATAACGCTTCTTTGATTCACTGCTGTGACCAGCATTTTGAATTGTGC
AGTCGAGGTGAAAGTTGGGAGATAAACAAGCCAAGGTAACATGGCCAACC
ACATATCCAGACCAACTCCTTTGCCAATATTTGCGGTGAATTCAAGAATA
TGTTGAAATTCAGGATCATCGATCTCATAGTTTGTGGAAAAACATCTTCG
ACAGATTGTATTGACCAAT Run BLAST on NCBI transcript from alignment at scaffold_456:687362..694105- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00066581 ID=TCONS_00066581|Name=TCONS_00066581|organism=Clytia hemisphaerica|type=transcript|length=6744bp|location=Sequence derived from alignment at scaffold_456:687362..694105- (Clytia hemisphaerica)
AACAGTATCATAGGAATAAAGTAAATGAAGTTGGATCTTCGGAGCTTCCA
CTGTACTGAACGTTTTTTTTTTTGCAAGTCTGATAAATTGGCAGCAAAAG
TTTTACTGGCTCCTTGAGATTCGAGCTTTATTGTGAAGTTCTTCTTATAA
GATATCGTTCGTTGGCTCACTATGGTTTGTTTTATGATTGTATCCGTCTC
TTGAAGATCACTTTATAGTCTGTAGCTGGTGAATACGGTCCTCCTGGTCC
TCGCTCGTCCAACCCCGGTAGCTTCTCTTCAAGATATGGACATATCTCGA
AAGTCCGAATCAATTTCGTCGTGATCAAAAACATTTGAACTTTAGCCATT
TTCTCACCAAGGCAGACTCGAGTTCCAGCTGAAAAAGGCAGATAGTGTGT
TGCCCTTTCCTTCTTTAAATTTCCATCAGCATTTAACCAGCGGTGAGGGT
TGAACTCGTGCGGTTTTACCCAATGATTTTCGTCATAGTGGAGACTGTAT
AGGTTAAACAGTATTGGAGCTCCTTTTGGAATGTTGATTCCATTGATTGA
TGTATCCACCATGGCTTTATGTGCAACATTGATTCTAGCAATTGAAGATT
TTCGATTGGTTTCAAACAGCATTGCCTGGGTGAACGGCAAAGAGTCCAGA
TCTGAATAAGTTAGACGGTGTCTCAAACCAAATGTATCCACAATTTCGTC
ATGCATTTTCTTTTGGTATTCTGGGTGGTGTAGGCAATACAGGAAAAACC
AACGAAGTGTTGTAAGAGAAGTTTCAATGCCGGCGAAAAACAAAATATTG
ACTGTATTTTCGAGATGGTCTTGAGAAACTTCTTCGAAGCCGGCATCTTT
CCACGCTTCTTTGTTTGAGGATAGAAAGAGAAGTTGATCAGTTACATCTC
GAAGCTTGTCTGGATTCAAAGTAGTCTTGTGTTCCTCGAACATTCGATGA
GTCATAACGCTTCTTTGATTCACTGCTGTGACCAGCATTTTGAATTGTGC
AGTCGAGGTGAAATGTGGGAGATAAACAAGCCAAGGCAACATGGCCAACC
ACATATCCAGACCAAGAGCTCCTTTGCCAATATTTGCGGTGAATTCAAGA
ATATGTCGAAATTCAGGATCATCGATCTCGTAGTTTGTGGAAAAACATCT
TCGGCAGATGGTGTTGATCAATGTGTTGCCTGAAACATTAAGTATTAGAA
GGAGAAGTAATCTTTGCTATATAATGTTTGCGACGACAGGAACCGCCTAG
TAGTAGTACATATGCAATTTGTTCCCATAAAACTGTGGTAGGCTCATCAA
CTGAAAATCCTTAAATCTTAAAGGTAAAACTCAACGAGAGACAATTTTCA
AGACGTTACCTAAATATGGTTGTATAGGAACAGGTTTGTCAAGTTCGCCA
GAGATAATGGAGCACAATTTATCTACGTCATCGGTCACAATATCTTCAAT
ATTCGTCATGCCGCTTCCATATAAATGTAAACTTTTGTACGCTAATTTTC
TGATGAAAGCCCATGACTTGGAATAATCCATTGCACCGAATGTTCTTCGT
CCTTTAGTTGCTACCAGTAGACTAAGTCTTGGTGAGCGTCCAGCCATCTC
ATGCCCTTTGGTGATAAGCCCCTCTTTGACGTTCTCGTAAGAATTAACGA
TGACGTATCTTTTCATACCTGTGTTTGAAAGGATAAATTGTAACTGGATT
TTAAGTAAACATGTTTGAGATATCCAGAGAAGGAGCTCTTTGGGAATTCT
TGAGTAGTCTTTCATAAGTTATGTGGCGCGTGAAATGGCTCGAAGAATGA
ACAACTCAAAAACAAAAAAACTGTCAGATTCATTCCGCGGTGGTACGCCC
TTGTGCTGTTCTTTTATTCCAAATTTCCCGGTGTCGCAGTAAAATATTAC
TCCCCAAAATTTATACTCTCCAGTCATTATTTACTGGGAAATAATTACTC
CCCAGTAATCTTTTCCAGGAAATTATTTCTTCCGGGAGTATAAATTTACG
CGAAAATAATGACTCCCTTCGGGAAATTTTTACTCCCCTGATAGTATACC
AAAAAACTGGCATAGATCACGATCAACATTCGGTTTCCTAATCTTTTTTT
TCCTGTTTATCATGAATAAATTACAAAAACTATATGGAAAAACTTTTACT
GTTATTTTGACATTTAAATTGAATTTAAACTTTTTTCTTGAGTGCGATTT
GCTTGGGTTAGAAAATTGAGAGATATTTAAAAAACCTGGCTACATCTTGA
CACTGCAACACTGTTTTCTTTATTTTGAAATAATTCTTGAAATTTAATTC
AAAAAATTCTTGTTCGTACAGCTTTTTCTTGGCCCAATAAAAATTCTAAT
AAAAAGGCATCTTTCTTCACTAGACTAATTTCGGGGAGTAAAGATTTACG
GTTACACCGGGCGCATGCATCCACGAGCAAATTTTCTGTCACCAAAAATA
AAACAAATGCTCTTACCTATGCTAATACTGAACACGTCACCATACGTTTT
TCCAATCTCCAAGAAATTCAAGTGTAAATCTTTACTCAGCAAATTCAGGT
TTCCAATCAGAGGAAGCGGGAATGGTCCTTTTGGATATTTCCTCGAACTG
ATTAAATGTTCCACATAAGTGATTAATACCCATAGTAAGAACAGACTTGG
TATTGCTAGTAAGATGTAAATAAACATTTTTTTACCTAAAATAGTAAGAA
AAAATATTTGCCTATTCATCTTTGCAAAATAACCCTTTCCAGATCATACC
AGCTCTATTTGTAGGCAAAATCAGGGTAAGTCTGGTAGTCCTATTTTTTT
CAAAAGAATTAAATCAAATACTGTAAACAAGTTAGACTTTAGACACCACT
ATTTCCACTATGCTCCTCTACTCCACTATGCATACACAACTTTTTGAAAC
TAATGTAATCTCAATTATACTTTTGCATCACAACAAAGGGCGCGTTTACA
CTGGAAGGTTTCCTTAATTAAATCCATCAAAGTTAAGATTTATGATGGAT
GAATACAATGGTTTATTACAGTTCTTTGTAGGTTGACGAGATCTATTATA
ACATGTTAATTGATTTTGCTTAAAGCCTCTCATTTATTGATTTTTTATTG
AGAGTTACAATTTCGCTTGTGATTAATTGATATTGATATCATTGATATCC
ATACATCCCTTGAAATCCGCAAAACTATTTGTTGTAATCGTTGTACTCAA
TAACTGCATTCGTCTTACATCATAGTCATTATAAAAAACCCCGGTCTATT
GTTTTAGCTTTTTGTTCAATTTTCTTTTGTTACAAACAAAAGACAAGTTA
CAATTTGAATACTTTTTTATCACGTTACCAAAATCTCCTCTTGGGATTGG
TCTATTTTCTAATCACATGATCAAAAAGTTTGCAAAATAAATCGATTTTG
GTACGTAAGCTCCATCTTTTAACAATAAAAAGAGACAAAAGCCTTCCAGA
CCAGTGTTTTTATAATGACTATGCTTACACATCAACAACACTGGTCGTGT
TCAGACATGAGAGTTTAAGTTTAAGGCGTAAGTAGTACTAAGTTGATATG
AGAATTAAGAAATACAACGACTTAATTGCTATTTCATCTTTTAGATGGAT
TACATAAGAGAGGAAAAAGGAATCCCCTTTTGAATGTTTGAGTGGGGCTT
CGTTTTTGATANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNCTTTGGTTTAACTTATGAGGAGTCTGCAGC
TAAATACAAAAGGAATATAAAAGAAACATGTAGACTTAATTACTTTAAAC
CTTGGTCTGAACACGACCACTGTTTGCACTGTTTCTATTTTTTCCTCAGT
TCATTCCTGTTTGAAATAGCAAAACTTTTTGTTAATTGCACGCATCCTTT
GTTTATGCTTCCTTAATAAAATATTTTGTTTTAAAGGCGGCTCCTACCAC
AGATATCTGTAAAGCCCGAAGGGCTAGATTTGCAGCTTTGTTCAAAAAGT
GAAGCTCATCTTTGGAAGGATTTCCTACCAGAGTCACGTGANNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNTCGGCACGAAATTTAAAAAGTCAAATTTT
TGCTTCACTTTTTTTTGCTGGAGAAAGCTTAAAGTTGCCTATCTAGCCCT
TCGGGCTTAGATATCTGTGGCTCCTACCCTACCTTTAAGACAATGGAGCC
TATGACTTTTGATTAAGGAAAATCAAATAAAAGTGACCATGCAATGCGGT
TAACCTTTTGTTGCGTGCACGCTTCTATTGTAAAAAATAAAAGAATTTAT
AACTACAGTTTTACTAAGGAAATCTTCCAGCGTGAACGCCCCCAATGTGT
TCTGTGTCTTTATGATACAAATAGATATCACAATAGTGAAGTTAAGTAAA
TCGGTAAAATCACGACTAACGAAGATTTAACAGGCTAGTGAGTTTCAACA
AATCAAATTTCATATTTTTACTAGCCTATTACGTTTTTCGTCCGTCGTCG
TGATTATCATGGTATCCTTAACCTCAGTAATATGTCAATTAAGCTATGAT
TCTTTTTACACTGCAAGATTGATTGCGTAACGTGAAATATGAGTTCACAC
AGAAACACAATCTTATTATTAGCCTGGATAAACTATTTCACAGTCTATTT
TTTGATATTTTATGTTCTGGTTTACAGCCTGGTCTCCTTAGAGCGATTTG
CATTCTCAGGCTAAAGCCGTAAGGGCCAATCTACATTGCGCGGAGAAATT
CTGCAACAAAAATAGGGTAACCCACCATCTGCTAGTGAACATACAGCTTT
CTGTTACATAAAAATGGCTTGACGTTTCATTTTTCCAAATTAATGTTTAA
TTAGCGTGTCGGTGGAGAAAGGCCCTTAATAACTTTGATATGCAAAATTG
ATATACCTTTTGCTGGATGCTGGCCTATTCAATGGTAAAAAAATAATCGT
CTAGCCGAATTTTGTAATGACTTGTTACATTACTCTTCGACTTTAAAGTA
CCTCGAAAAATTTCAACAAAGTTTTTGACATGCACTGTCTCTTTCTTTAC
AAGAACAATTTTATTAGAACGATGAGGCTCTAAATCGTCAAATGACAAGA
TTAAGCTAAGTACAGTGTTGATTTTGGAATTTCAAGTAGTTTAAGAGTCA
AAGTAGTGAAAGCGGATATAAAGCCTAACATAATTTTGCCTTAAAAAAAG
AAGAAATATTTACAGTGCCACCAAAATCATAAGGATGTTAAGTAAATGAG
GTTGGATCTTTGGAGCTTCTACTGCTCTAAATATGAAAACATTTTTTTAC
AAGTCTGATAAATTAGCAGCAAAAGTTTTACTGAATCCTTGAGATTCGAG
CTTTATTGTGAAGTTCAACTTATAAAACAGAGTTCGTTGGCTCGCTATGG
TTTGTTTTATGATTGTATTCGTCTCTTGAAGATCACTTTATAGTCTGTAG
CGGGTGAATACGGTCCTCCTGGTCCTCGTTCGTCCAACCCTGGTAGCTTC
TCTTCAAGATATGGACATATCTCGTAAGACCGAATCAATTTCGTCGTGAT
CAAAAACATTTGAACTTTAGCCATTTTCTCACCAAGGCAGACTCGAGTTC
CAGCTGAGAAAGGCAGATAGTGTGTTGCTCTTTCCTTCTTTAGACTTCCA
TCAGCATTTAACCAGCGGTGGGGGTTGAACTCGTGCGGTTTTTCCCAATG
ATTCTCGTCATAGTGAAGACTGTATAGGTTAAACAGTATTGGAGCTCCTT
TTGGAATGTTGATTCCATTGATTGATGTATCCACCATGGCTTTATGTGCA
ACATTGATTCTAGCAATTGAAGATTTTCGATTGGTTTCAAACAGCATTGC
TTGGGTGAACGGCAAAGAGTCCAGATCTGAATAAGTTAGACGGTGTCTCA
AACCAAATGTCTCCACAATTTCGTCATGCATTTTCTTTTGGTATTCTGGG
TGGTGTAGGCAATACAGGAAAAACCAACGAAGTGTTGTAAGAGAAGTTTC
AATGCCGGCAAAAAACAAAATATTGACTGTATTTTCGAGATGGTCTTGAG
AAACTTCTTCGAAGCCGGCATCTTTCCATGCTTCTTTGTTTGAGGATAGA
AAGAGAAGTTGATCAGTTACATCTCGAAGGTTGTCTGGATTCAAGGTTGT
CTTGTGTTCCTCGAACATTCGATGAGTCATAACGCTTCTTTGATTCACTG
CTGTGACCAGCATTTTGAATTGTGCAGTCGAGGTGAAAGTTGGGAGATAA
ACAAGCCAAGGTAACATGGCCAACCACATATCCAGACCAACTCCTTTGCC
AATATTTGCGGTGAATTCAAGAATATGTTGAAATTCAGGATCATCGATCT
CATAGTTTGTGGAAAAACATCTTCGACAGATTGTATTGACCAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00066581-exon-scaffold_456-1575043694:693719..694105 | TCONS_00066581-exon-scaffold_456-1575043694:693719..694105 | Clytia hemisphaerica | exon |
| TCONS_00066581-exon-scaffold_456-1575043694:687362..688143 | TCONS_00066581-exon-scaffold_456-1575043694:687362..688143 | Clytia hemisphaerica | exon |
| TCONS_00066581-exon-scaffold_456-1510915933:693719..694105 | TCONS_00066581-exon-scaffold_456-1510915933:693719..694105 | Clytia hemisphaerica | exon |
| TCONS_00066581-exon-scaffold_456-1510915933:687362..688143 | TCONS_00066581-exon-scaffold_456-1510915933:687362..688143 | Clytia hemisphaerica | exon |
| TCONS_00066581-exon-scaffold_456-1491911889:693719..694105 | TCONS_00066581-exon-scaffold_456-1491911889:693719..694105 | Clytia hemisphaerica | exon |
| TCONS_00066581-exon-scaffold_456-1491911889:687362..688143 | TCONS_00066581-exon-scaffold_456-1491911889:687362..688143 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_456 | supercontig | scaffold_456:687362..694105 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0005506 | iron ion binding |
| GO:0020037 | heme binding |
| GO:0016705 | oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0055114 | oxidation-reduction process |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0055114 |
oxidation-reduction process |
| molecular_function |
GO:0020037 |
heme binding |
| molecular_function |
GO:0005506 |
iron ion binding |
| molecular_function |
GO:0016705 |
oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen |
Blast
BLAST of TCONS_00066581 vs. Swiss-Prot (Human)
Match: CP17A (Steroid 17-alpha-hydroxylase/17,20 lyase OS=Homo sapiens GN=CYP17A1 PE=1 SV=1) HSP 1 Score: 178.718 bits (452), Expect = 3.268e-50 Identity = 96/307 (31.27%), Postives = 167/307 (54.40%), Query Frame = -2
Query: 257 LVNTICRRCFSTNYEIDDPEFQHILEFTANIGKGVGLDMWLAMLPWLVYLPTFTSTAQFKMLVTAVNQRSVMTHRMFEEHKTTLNPDNLRDVTDQLL---FLSSNKEAWKDAGFEEVSQDHLENTVNILFFAGIETSLTTLRWFFLYCLHHPEYQKKMHDEIVETFGLRHRLTYSDLDSLPFTQAMLFETNRKSSIARINVAHKAMVDTSINGINIPKGAPILFNLYSLHYDENHWEKPHEFNPHRWLNADGSLKKERATHYLPFSAGTRVCLGEKMAKVQMFLITTKLIRTFEICPYLEEKLPGLD 1168
+ N I CF+T+Y+ DPE I + I + D + ++PWL P T + L + V R+ + +++ E +K D++ ++ D L+ S N A D E +S +H+ T+ +F AG+ET+ + ++W + LH+P+ +KK+++EI + G T SD + L +A + E R +A + + HKA VD+SI + KG ++ NL++LH++E W +P +F P R+LN G+ + YLPF AG R C+GE +A+ ++FLI L++ F++ + +LP L+
Sbjct: 175 VTNVISLICFNTSYKNGDPELNVIQNYNEGIIDNLSKDSLVDLVPWLKIFPNKT----LEKLKSHVKIRNDLLNKILENYKEKFRSDSITNMLDTLMQAKMNSDNGNAGPDQDSELLSDNHILTTIGDIFGAGVETTTSVVKWTLAFLLHNPQVKKKLYEEIDQNVGFSRTPTISDRNRLLLLEATIREVLRLRPVAPMLIPHKANVDSSIGEFAVDKGTEVIINLWALHHNEKEWHQPDQFMPERFLNPAGTQLISPSVSYLPFGAGPRSCIGEILARQELFLIMAWLLQRFDLEVPDDGQLPSLE 477
The following BLAST results are available for this feature:
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