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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00066576 ID=TCONS_00066576|Name=TCONS_00066576|organism=Clytia hemisphaerica|type=transcript|length=3573bpRun BLAST on NCBI protein sequence of TCONS_00066576-protein >TCONS_00066576-protein ID=TCONS_00066576-protein|Name=TCONS_00066576-protein|organism=Clytia hemisphaerica|type=polypeptide|length=738bp MRQLRMDDSHSSSKSRTRTGTSSGDDVYVGKYKLIKTIGKGNFAKVKLAKRun BLAST on NCBI transcript from alignment at scaffold_456:614269..643193- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00066576 ID=TCONS_00066576|Name=TCONS_00066576|organism=Clytia hemisphaerica|type=transcript|length=28925bp|location=Sequence derived from alignment at scaffold_456:614269..643193- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_456:614269..643193- >TCONS_00066576 ID=TCONS_00066576|Name=TCONS_00066576|organism=Clytia hemisphaerica|type=CDS|length=37689bp|location=Sequence derived from alignment at scaffold_456:614269..643193- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00066576 vs. Swiss-Prot (Human)
Match: MARK2 (Serine/threonine-protein kinase MARK2 OS=Homo sapiens GN=MARK2 PE=1 SV=2) HSP 1 Score: 700.279 bits (1806), Expect = 0.000e+0 Identity = 384/763 (50.33%), Postives = 487/763 (63.83%), Query Frame = 2
Query: 587 YVGKYKLIKTIGKGNFAKVKLAKHLPTGREVAIKIIDKTQLNQTSLQKLFREVRIMKFLDHPNIVKLYEVIETDKTLYLIMEYASGGEVFDYLVAHGRMKEKEARAKFRQIVSSVQYCHQKHVIHRDLKAENLLLDADMNIKIADFGFSNEFSPGNKLDTFCGSPPYAAPELFQGKKYDGPEVDVWSLGVILYTLVSGSLPFDGQNLKELRERVLRGKYRIPFYMSTDCEALLKKFLVLNPEKRASLETIMTDKWMNIGYENEELKPHIEPKPDLNDTKRIDVMVKMGFTMGEIQEALKSNKYDEVMATYLLLD-ETRLTSSDSIHIDATFIKNANNENSTSRSTR-----KSGKENKRYPESSRSERAPLINDKSSTTNGDRSS-------RSTGRTTDQTGKNPNVADIPDTETLDKTRNSSKGLQRQKSAPSGPQSRRHTYGQDRAPKNATSVPEKATGSAGQTNGERDSDLPQAS---------------KSKQKNMNDRLSPTRIS-LPPINKNERRHDHEFGRPTTAP----------------GTGPLDIGASRNNKLRSTYHGSTGQ-RKAKVPEERSVDTNSAVASGQ---RTPWLSKLKSRFSTRMSRENLLSKFRRRRQSNVXXXXXXXX---XXXXXXXXXXXXXXFDRIKPRSLRFTWSMKTTSNLDAESVIHEMKRVLDLNMCDYECRDKYLLYCGHRSTKNNNTLVQWEMEVCKLPRLHLNGVRMKRIQGPVIDFRNITSKISNEMNL 2719
++G Y+L+KTIGKGNFAKVKLA+H+ TG+EVA+KIIDKTQLN +SLQKLFREVRIMK L+HPNIVKL+EVIET+KTLYL+MEYASGGEVFDYLVAHGRMKEKEARAKFRQIVS+VQYCHQK ++HRDLKAENLLLDADMNIKIADFGFSNEF+ GNKLDTFCGSPPYAAPELFQGKKYDGPEVDVWSLGVILYTLVSGSLPFDGQNLKELRERVLRGKYRIPFYMSTDCE LLKKFL+LNP KR +LE IM D+WMN+G+E++ELKP++EP PD D +R ++MV MG+T EIQ++L +Y+EVMATYLLL ++ D+I + + N ++ S S + + + +R+ + + P N S T + + R +GR T K P + +P GL+R+K+ P+ + + +R+ +N+ + + G A NG+ +P + + QK+M+ + P + S LPP N E RP+TAP G P R RST+H GQ R+ + + A SG R + S+F+++ R NL +F RR + + D + + F KPRSLRFTWSMKTTS+++ ++ E+++VLD N C E +KY+L C H T + VQWEMEVCKLPRL LNGVR KRI G + F+NI SKI+NE+ L
Sbjct: 49 HIGNYRLLKTIGKGNFAKVKLARHILTGKEVAVKIIDKTQLNSSSLQKLFREVRIMKVLNHPNIVKLFEVIETEKTLYLVMEYASGGEVFDYLVAHGRMKEKEARAKFRQIVSAVQYCHQKFIVHRDLKAENLLLDADMNIKIADFGFSNEFTFGNKLDTFCGSPPYAAPELFQGKKYDGPEVDVWSLGVILYTLVSGSLPFDGQNLKELRERVLRGKYRIPFYMSTDCENLLKKFLILNPSKRGTLEQIMKDRWMNVGHEDDELKPYVEPLPDYKDPRRTELMVSMGYTREEIQDSLVGQRYNEVMATYLLLGYKSSELEGDTITLKPRPSADLTNSSAPSPSHKVQRSVSANPKQRRFSDQAAGPAIPTSNSYSKKTQSNNAENKRPEEDRESGRKASSTAKVP-ASPLP-------------GLERKKTTPTPSTNSVLSTSTNRS-RNSPLLERASLGQASIQNGKDSLTMPGSRASTASASAAVSAARPRQHQKSMSASVHPNKASGLPPTESN-----CEVPRPSTAPQRVPVASPSAHNISSSGGAPDRTNFPRGVSSRSTFHA--GQLRQVRDQQNLPYGVTPASPSGHSQGRRGASGSIFSKFTSKFVRRNLSFRFARRNLNEPESKDRVETLRPHVVGSGGNDKEKEEFREAKPRSLRFTWSMKTTSSMEPNEMMREIRKVLDANSCQSELHEKYMLLCMH-GTPGHEDFVQWEMEVCKLPRLSLNGVRFKRISGTSMAFKNIASKIANELKL 788 The following BLAST results are available for this feature:
BLAST of TCONS_00066576 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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