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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00066567 ID=TCONS_00066567|Name=TCONS_00066567|organism=Clytia hemisphaerica|type=transcript|length=6039bpRun BLAST on NCBI transcript from alignment at scaffold_456:609864..631804- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00066567 ID=TCONS_00066567|Name=TCONS_00066567|organism=Clytia hemisphaerica|type=transcript|length=21941bp|location=Sequence derived from alignment at scaffold_456:609864..631804- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00066567 vs. Swiss-Prot (Human)
Match: MARK3 (MAP/microtubule affinity-regulating kinase 3 OS=Homo sapiens GN=MARK3 PE=1 SV=4) HSP 1 Score: 735.717 bits (1898), Expect = 0.000e+0 Identity = 406/752 (53.99%), Postives = 484/752 (64.36%), Query Frame = 2
Query: 653 YVGKYKLIKTIGKGNFAKVKLAKHLPTGREVAIKIIDKTQLNQTSLQKLFREVRIMKFLDHPNIVKLYEVIETDKTLYLIMEYASGGEVFDYLVAHGRMKEKEARAKFRQIVSSVQYCHQKHVIHRDLKAENLLLDADMNIKIADFGFSNEFSPGNKLDTFCGSPPYAAPELFQGKKYDGPEVDVWSLGVILYTLVSGSLPFDGQNLKELRERVLRGKYRIPFYMSTDCEALLKKFLVLNPEKRASLETIMTDKWMNIGYENEELKPHIEPKPDLNDTKRIDVMVKMGFTMGEIQEALKSNKYDEVMATYLLLDETRLTSSDSIHIDATFI--------KNANNENSTS------RSTRKSGKENK-------------RYPESSRSERAPLINDKSSTTNGDRSSRSTGRTTDQTG-----------KNPNVADIPDTETLDKTRNSSKGLQRKSAPSGPQSRRHTY-GQDRAPKNATSVPEKATGSAGQTNGERDSDLP--QASKSKQKNMNDRLSPTRISLPPINKNERRHDHEFGRPTTAPGTGPLDIGASRNNKLRSTYHGSTGQRKAKV----PEERSVDTNSAVASGQR----TPWLSKLKSRFS------------------------TSRSLGEEAQ---PTGKPRSLRFTWSMKTTSSMDPADMMAEIKRVLDLNGCDYQQREKFLLFCIHGDPYESSLVHWEMEVCKLPRLSLNGVRFKRISGSSIAFKNIASKIANELQL 2680
++G Y+L+KTIGKGNFAKVKLA+H+ TGREVAIKIIDKTQLN TSLQKLFREVRIMK L+HPNIVKL+EVIET+KTLYLIMEYASGGEVFDYLVAHGRMKEKEAR+KFRQIVS+VQYCHQK ++HRDLKAENLLLDADMNIKIADFGFSNEF+ G KLDTFCGSPPYAAPELFQGKKYDGPEVDVWSLGVILYTLVSGSLPFDGQNLKELRERVLRGKYRIPFYMSTDCE LLK+FLVLNP KR +LE IM D+W+N G+E +ELKP +EP+ D++D KRID+MV MG++ EIQE+L KYDE+ ATYLLL S ++ + + NN S RS S K+ + YP+ S++ A D +G S +S+G G NPN ADIP+ R S + + SG +RR+TY +R + SV + NG+ +S +P + + +++ +P RI P R RST+HG +R+ P S+ + S R T SKL S+ + +SR++ E + KPRSLRFTWSMKTTSSMDP DMM EI++VLD N CDY+QRE+FLLFC+HGD + +LV WEMEVCKLPRLSLNGVRFKRISG+SIAFKNIASKIANEL+L
Sbjct: 52 HIGNYRLLKTIGKGNFAKVKLARHILTGREVAIKIIDKTQLNPTSLQKLFREVRIMKILNHPNIVKLFEVIETEKTLYLIMEYASGGEVFDYLVAHGRMKEKEARSKFRQIVSAVQYCHQKRIVHRDLKAENLLLDADMNIKIADFGFSNEFTVGGKLDTFCGSPPYAAPELFQGKKYDGPEVDVWSLGVILYTLVSGSLPFDGQNLKELRERVLRGKYRIPFYMSTDCENLLKRFLVLNPIKRGTLEQIMKDRWINAGHEEDELKPFVEPELDISDQKRIDIMVGMGYSQEEIQESLSKMKYDEITATYLLLGRKSSELDASDSSSSSNLSLAKVRPSSDLNNSTGQSPHHKVQRSVFSSQKQRRYSDHAGPAIPSVVAYPKRSQTSTA----DSDLKEDGISSRKSSGSAVGGKGIAPASPMLGNASNPNKADIPE-------RKKSSTVPSSNTASGGMTRRNTYVCSERTTADRHSVIQ---------NGKENSTIPDQRTPVASTHSISSAATPDRIRFP------------------------------RGTASRSTFHGQPRERRTATYNGPPASPSLSHEATPLSQTRSRGSTNLFSKLTSKLTRRNMSFRFIKRLPTEYERNGRYEGSSRNVSAEQKDENKEAKPRSLRFTWSMKTTSSMDPGDMMREIRKVLDANNCDYEQRERFLLFCVHGDGHAENLVQWEMEVCKLPRLSLNGVRFKRISGTSIAFKNIASKIANELKL 753 The following BLAST results are available for this feature:
BLAST of TCONS_00066567 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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