|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00066550 ID=TCONS_00066550|Name=TCONS_00066550|organism=Clytia hemisphaerica|type=transcript|length=3095bpRun BLAST on NCBI transcript from alignment at scaffold_456:229787..275803- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00066550 ID=TCONS_00066550|Name=TCONS_00066550|organism=Clytia hemisphaerica|type=transcript|length=46017bp|location=Sequence derived from alignment at scaffold_456:229787..275803- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00066550 vs. Swiss-Prot (Human)
Match: ATG2B (Autophagy-related protein 2 homolog B OS=Homo sapiens GN=ATG2B PE=1 SV=5) HSP 1 Score: 363.229 bits (931), Expect = 9.933e-105 Identity = 298/1042 (28.60%), Postives = 491/1042 (47.12%), Query Frame = 3
Query: 96 MPWYFPWSESIKKRACRYLLQHYLGDFLKEKLDLDQLSVDLYNGKGTIKEVPLDVWALNEMLSNSGVPIELVDGFIESISVLVPWKALLNDSCEIEIHGLQLTFAGRQK-SEGSLVESIHSWSSMSMTTSIQMAQECLKQDPTLADPQ-ESGQSFEGLEAFAQTIESVLARVRLSFVNTKIRLEHLPFAAKSGVGIDLTIDRIDYWDLSHEEIGRDNTPQHSVYEPVAVAIKNFQIIGANLFIDEFPKQNRTRLRSMYSDEDEDLSGSPLSPLKEDYTRYXXXXXXXXRSHQDEDIPPNLLPK--VKFLSSCGKQNIKLKLKQNDAIPGHKIDLEYSIAALNMFLTPREFHLLNDVVXXXXXXXXXXXXXXXXXRDNNIYYXXXXXXXXXXXXXXXXXXXRPKMREMRTEDFTKVEESLQQQFTSVDSHDWK-SAINSLNSTEGTSMNRASSEEEFFSMTDY-------PLPQLGQPTLLN-----TVKQCNLTGSEDISTGRFSPTSPRXXXXXXXXXXXXXXXXXXXXXXEKASTIFRGSTSGSPGQRTQHGFVSSPXXXXXXNLGLAGVGKLDDTGESTRVRMRASNIIIIVLHRDPLEGVDSVD--CSLEEISANFFNHVSQYSIQSLFGINADDVKDNLLSICTYDHLRILSSALNIEAEFNSNSQ----SIDLILGKLSIDENLFEDNGYRRKPYSQTQVVSFDQQDVSPLYPGSFGASLSPCVKLKISKTA-RSATGVHSRGSMAP-KSQITVELGTIILDVDLTLMDRIAALLSQEPLYKTISPAHPHYSDMYNSLATGKSANHETAYRQAMYD---SPMNSDYKTDLVCKCAKSQIFLRIPVPDLRSSSNLEKKPWWRRQVHKESLLIDLHGFELKTILASSNHPTSSSYDLGFREAKGTFIT----PTNKYHVFDIGPTTEEGESGSMGVDMPRILINLTPPSSRSVFE--------TSEG--LSKDDSSPDSIEDQYPWMKSEPSPFSTQPNMYNENEEMVTPGSVNEMNAFQEFVSSNTSMAVNCYFPSM 3095
MPW P+SESIKKRACRYLLQ YLG FL+EKL L+QLS+DLY G G++ +VPLD W LNE+L ++ P+E+ +GFI+SIS+ VPW +LL D+C +E+ GL++ F R + + GS E ++ WSS MT+S+Q+A+ECL Q L D Q E Q FEGLE FA+TIE+VL RV+++F++T +R+EH+P +K+G +++ I+R Y D + +E N V++P A A K Q+ G +LF DEF ++ + + + SP K Y + P + P V+ G+ + L LKQN+ +PG K+D++ I ++++ L+PR+ HLL D++ +++ +S + N R M+ ED +++ L + + DS S+ S TE + EE FFSM D LP LG P ++ T N +S PT + + ST +P Q+T S P+ + +D++ R+ I VLH DPL ++ L ++ FF + + + + C++DHLR + + + + E S S D+ +G++ E LF + + P+ T++++F ++ + G+ C++L + R G +R S P K+++ ++L + ++D++++DR+ +LL + L T+ H YN K + A+ + D SP N + + +R P+PDLR S+ E+ PW+++ + KE L + E KT + P +L FRE G+F P+ K+ F + + + S D PRI++ + PP+ S+ E ++G +++ S++D + PSPFS++ M+ ENE+MV PG EM FQ+ SN+ + P++
Sbjct: 1 MPW--PFSESIKKRACRYLLQRYLGHFLQEKLSLEQLSLDLYQGTGSLAQVPLDKWCLNEILESADAPLEVTEGFIQSISLSVPWGSLLQDNCALEVRGLEMVFRPRPRPATGS--EPMY-WSSF-MTSSMQLAKECLSQK--LTDEQGEGSQPFEGLEKFAETIETVLRRVKVTFIDTVLRIEHVPENSKTGTALEIRIERTVYCDETADESSGIN-----VHQPTAFAHKLLQLSGVSLFWDEFSASAKSSPVCSTAPVETEPKLSPSWNPKIIYEPHPQLTRNL----------PEIAPSDPVQIGRLIGRLELSLTLKQNEVLPGAKLDVDGQIDSIHLLLSPRQVHLLLDMLAAIAGPENSSKIGLANKDRKN--------------------------RPMQQEDEYRIQMELNRYYLRKDSLSVGVSSEQSFYETETARTPSSREEEVFFSMADMDMSHSLSSLPPLGDPPNMDLELSLTSTYTNTPAGSPLSATVLQPTWGEFLDHHKEQPV-------------RGSTFPSNLVHPTPLQKT-----SLPSRSV----------SVDESRPELIFRLAVGTFSISVLHIDPLSPPETSQNLNPLTPMAVAFFTCIEKIDPARFSTEDFKSFRAVFAEACSHDHLRFIGTGIKVSYEQRQRSASRYFSTDMSIGQMEFLECLFPTDFHSVPPH-YTELLTFHSKEET-------GSHSPVCLQLHYKHSENRGPQGNQARLSSVPHKAELQIKLNPVCCELDISIVDRLNSLLQPQKL-ATVEMMASHMYTSYN-----KHISLHKAFTEVFLDDSHSPANCRISVQVATPALN--LSVRFPIPDLR--SDQERGPWFKKSLQKEILYLAFTDLEFKTEFIGGSTPEQIKLELTFRELIGSFQEEKGDPSIKF--FHVSSGVDGDTTSSDDFDWPRIVLKINPPAMHSILERIAAEEEEENDGHYQEEEEGGAHSLKDVCDLRRPAPSPFSSRRVMF-ENEQMVMPGDPVEMTEFQDKAISNSHYVLELTLPNI 944 The following BLAST results are available for this feature:
BLAST of TCONS_00066550 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2024, MARIMBA.