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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00066537 ID=TCONS_00066537|Name=TCONS_00066537|organism=Clytia hemisphaerica|type=transcript|length=1321bp
CTTCTATGAAAAAAATGCAATAAGCTcatgaaagaaataaaaaacaactt
tttaccATATGAATCCGATTAAAATGGGTGTGTaacaaagaaatggaaaa
aaaatgttCATTATCAAAGGCATACTTTTAAATTAatctaaattttcttt
tgttatgcTTGAAGTGATAAAATAGAATTTCTAAATTGTGGGATCGTCAG
TTCATATTTTGAGCATCAACAAGCAGTGATTCAACCTTTCACATTGGTTT
TGTTGTAATTTAAGCTTGATTCAGatttttgtcaATATGGTGGATGTGAA
AAAAATTGGAGTAGTAGCTGCATGTGCATTCGTCTTTATCCTTCTTTCTG
CGTCAACTGGTGGCGTGGGATGGGTCACATCTGAAAattttgGCATTGAA
AGTAGTAGTGGCTTGTTTAGAAAATGTAGAAAAAGTGGCGGTGCGAGCAA
TTGTGCAGATTTAGCAAGTGACCAGCTTTCTGACAAGGATAAAGCGGTTC
AAGCATTCATGATCTTGTCTGTGTTAACATCCATTGCAGCTGTTGTTTTT
GCTATCTTACATATGGTCACTGACAAAATCCCTGTTAAGCTGATCTCTTT
GCTCATGGTCGTTATTTTCGTTCTGGCATTGATTGGTCTGGCAATCTTCA
CTGCAAATAAAGAGGACCTGGCCTCTAGTGCTGATTACGGATGGGCTTAT
GGATTGGGATGGTTTGGCGCCCTAGCCGCCCTTATTGTTGGTGTATTAGT
CTTTGTACTGTTTCGTTCGTCGTGATTTAACGGTGATTCAAACTTAAAAT
CCAAAGAAATCTTGAACAATTATATACTGTAAGCTTCATGTTATCCCAGA
ATCGAAATTTTCGATCAAAATATCTAATATTTATCATTCTAGGTATTTCT
AACATTATAATTAGCACATATTTTATCCCCTGTTGATAAACTGTTTAACT
TTGTTTCCGCGTTAAGTCCGCCCTAACGCTTTGGGCGTGGTGGCCGTTAA
AATGGACAATGTTTTAGATGTTTGTAACATCTGGGTGGCAATATCCGAAA
CCATATGAATCGATTTTATCTGTAGTATTTATAGAGCACTTTTCTAATAT
TTTCTTGTGTTAgttatttttcaagaaattcacTTTTAAATATTCTTGAC
CGTTCACaacacaaaattttttatttctttaacgCTCTCCATCCCGTGGG
GTGTGTCGCCCCCTGCTAGAAtcttttcaagtttttgaaCCATTCACCAA
AACCTTCTAAAACCAAAggcaaaaaaatattctcaGCTTATATCATTTAG
TTTTTAATATCTCTTTGACAG Run BLAST on NCBI protein sequence of TCONS_00066537-protein >TCONS_00066537-protein ID=TCONS_00066537-protein|Name=TCONS_00066537-protein|organism=Clytia hemisphaerica|type=polypeptide|length=162bp
MVDVKKIGVVAACAFVFILLSASTGGVGWVTSENFGIESSSGLFRKCRKS
GGASNCADLASDQLSDKDKAVQAFMILSVLTSIAAVVFAILHMVTDKIPV
KLISLLMVVIFVLALIGLAIFTANKEDLASSADYGWAYGLGWFGALAALI
VGVLVFVLFRSS Run BLAST on NCBI transcript from alignment at scaffold_456:164064..168805- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00066537 ID=TCONS_00066537|Name=TCONS_00066537|organism=Clytia hemisphaerica|type=transcript|length=4742bp|location=Sequence derived from alignment at scaffold_456:164064..168805- (Clytia hemisphaerica)
CTTCTATGAAAAAAATGCAATAAGCTCATGAAAGAAATAAAAAACAACTT
TTTACCATATGAATCCGATTAAAATGGGTGTGTAACAAAGAAATGGAAAA
AAAATGTTCATTATCAAAGGCATACTTTTAAATTAATCTAAATTTTCTTT
TGTTATGCTTGAAGTGATAAAATAGAATTTCTAAATTGTGGGATCGTCAG
TTCATATTTTGAGCATCAACAAGCAGTGATTCAACCTTTCACATTGGTTT
TGTTGTAATTTAAGCTTGATTCAGGTAAGTTTTTTTTCAGCTATTTTCCT
TATGTTTATTTGAATTTAAATACCACCCGTCAGCTCAAAACCCTTCTTCC
CCCGAGAGATTCATTTTATTTTACTTGAGAAAGTTTGAAGATTCCTTTCT
AGCTCTTCGCGGGCAATAAACTCAATGAATAATTTTTTTTTCAAATCATT
TGAGACAGTAAAGACGAAAACGTTAACATCTTTAACGACATTAACGCCTT
CTGAGTAGCCGTATCCTATGGCAAATTTTACATTATTAATGTTGTTTTGA
AGTACGTTGTCTTTGTCTTTTCTTTGTTGTTTCACGTAGCGGACTTGCTC
GCCAGAAAAATATTCATGCTCAGCAGATTCATGTTGTTTCTTCCGATTCT
GAGCGGGCCGCCGCGGTTAAAAATGTTTGCGCGCACCTAATATTATATCT
CTTTTGTTGCTACTTGGTACTTTATAGGAATCAAATCAATAACTCTTGAT
TGAAGGCCATATACCTTTCGGTAATTAGTTCTTAGAAAGTAAACAAAGGA
TGGCGAAAAAAATGAGCATATTTATTTTTATTATAAGCATCTACTTTATA
AGAATCAAATCAATATCTCTTGATTGAAGGTAATATGCCTTTCGGTAATA
AGTTCTTACAAAGTAAACAAAGGATGGCGAAAAAGATGAGCATGTTTATT
TTTATTATAAGCATCTACTTTATAAGAATCAAATCAATATCTCTTGATTG
AAGGCAATATATCTTTCGGTAATTAGTTATTAGAAAGTAAACAAAGGATG
GTCAAAAAGATGAGCATATTTATTTTTATTATAAGCATCTACTTTATAAG
AATCAAATCAATAACTCTTGATTGAAGCCAACATGCCTTTCGGTAATTAG
TTATTAGAAAGTAAACAAAGGATGGCCAAAAAGATGAGCATATTCTTTTA
TTATAAGCATCTACTTTATAAGAATCAAATCAATAACTCTTGATTGAGGG
CAATATGCCTTTCGGTAATTAGTTATTAGAAAGTAAAGAAAGGATGTGCT
CATCTTTTTAAGTGTCTACTTTATAAGCATCAAATCAATTTTCAGAATTT
TTGGCGTTTCCACTGTGATAACATATGAGCGATACCTTCTCTTTTTGAGA
TGTGAACGACCGTCCATCGCATGTCATCTCAAAAGTAAAGTTGAAACCAA
GCTTTCTTCCTCCGACTTAAATTTTATCGATAAAACGAATTTAAAATCTA
CACATGCGTTATGTTGCTTACTTAGGGATATTTCGAAAGGAAGCTCTGCG
GGGCATTCTTAGTGACAGCTACTTGCTAGTTTTAATTTAAACTGCCTTGA
AGATTTGCAATATTTAATATCGTTTTGAAAATGATTCAGTAAGGTCATCG
AAAATCGACATCTATTTTACATGACATTGATTTGAATGCTCAAATTTCAA
ATTTAAAGATACACCTATTCAGAATTTGTTATGAACTTTATATGCTAAAT
ATATTAACTGGATAAGGACTATAACTAGAAATATTAAAGGGATTTAATAA
AAAACTTGCATAAGCCAACTTTGATTTGATTTGATTTAATGCTGTTTTTT
TTTCAGATTTTTGTCAATATGGTGGATGTGAAAAAAATTGGAGTAGTAGC
TGCATGTGCATTCGTCTTTATCCTTCTTTCTGCGTCAACTGGTGGCGTGG
GATGGGTCACATCTGAAAGTAAGTTAAAAATAAAATTCTTTCTTTACATT
GAAATTGAAAATATATTAATAATTTTTGTTTTTTATAAGCTCGGGTAAGT
TTATGGCATGTCTTAAAATTACCATAATTTTTAGATCACATTAGTCGACA
GAAAATGACCAAACAAATGACTGAACATGAAGGGTAGTATGATGTAGTTT
CTAGCCTGATGTGTAACCTAATTGTTTTTTCTCTGATTTTCGCGAAAAAC
CGCAAAAACTGATTATTACGTAGTAATCGATGACGTCATCAAAACTAAAA
ATTGAATTTCTCAAGAATGGTTTATCCAATCGTCTTCAAACTTTCACCAA
AGATGTATCGTACTAAAGTCGATCATTTAATAAAATGATTTTTTCAAAAT
TTTGATGACGTCAGCAGAAAATAGGATTTTTCGTTTTTCACTAATTTCTG
CTGACGTCATCAAAATTTCGAAATAGTTTTTTTTTCAAATGATCGACTTT
AGTAAGATACATCTTTGGTGAAAGTTTGAAGACAATTGAATTAACCATTC
TTGAGAAATTCAATTTTTAGTTTTGATGACGTCATCGATTATTACGTAAT
AATCAGTTTTTGCGGTTTTTCGCGAAAATCAGCGAAAAAACAATTAGGTT
ACACATCAGGTTAGAAACTACATCATAATACCCTTCATGTTCAGTCAATC
GTATGGTCATTTTCTGTCGACTAATGCGATCTAAAAATTATGGTAATTTT
CAGTTTTTGAGACATGCCATAACTTACCCGAGATGAACAAAATTTTTAAG
ACCATAAGGCTTCGATAGTCAAAATGTTAAGAACAAGTTAAGAACATTTT
AAGGCTTTGGGGACTCTGAAACACCCGATTTCTTAGGAAAACAGACAAAA
ATACCCACGAAGTGGTGAAAATAAGAACATGTTAAGAATATTTTTAGGCT
TAAATCTCAAAAAGTTAAGAAAATTCAAAGGCTTCAAAAATTTTGGATTT
TCTTATGAAAAAAACGTGTAATATTTTAGAATTTTAAGTTTTGGGCAAGA
ATGGCGATTCCAGCACTTCAAATTTTTTTTCATTGGACATTTCGAATTCT
GAGGGATTCAGTGGCTGATAGGTCATATTCTCAGCTTTATTGAAAAAAAA
ATTAAGATTTTGAATCCTAAGATACTAAGGTTTTTAAAATGTACAGGGAA
CTCGCGGTACAGAACCCATTATAAAATTCGATCATAATATTTGATAAAAA
GGCGAGATTGACTAGGCTGCACACATCCCCTCTGATAAGTTTTGATATAT
CAAAACTAATTTAGGGATGCATGCAGCCTAGAGATTGACATGCCCAATAT
GGATCTGTAAGCCTATCTGTAAGAATGAGAATATCATATTTCACGTATTT
TTTTATAAGAACAAACTATATAAGAACATGAGGCTTAGATGACCAAAATA
TTGAGACTAAGTCAAAAACATTTTAAGGCTTTGCAGACTCTAAAATACCG
AATTTCTTAGAAAAATAGACAAAAATACTCAAAAAATATTTTTAGGCTTA
AAAGTTAAAAAAGTTAGTTAAGAACATCCAAAGTCTTGGATATTCTTATA
AAAAACGTGTATTCTGATAATCTATCGATTAAAGTAACATTACAGATTGA
AAGTTAGATAATTACTTTTAGACGGTTGGAGTTCTTTTACTCATCANAAA
AAAGTTAGTTAAGAACATCCAAAGTCTTGGATATTCTTATAAAAAACGTG
TATTCTGATAATCTATCGATTAAAGTAACATTACAGATTCAAAGTTAGAT
AATTACTTTTAGACGGTTGGAGTTCTTTTACTCATCCTGCTTCTTTTTTT
GTTTTAGATTTTGGCATTGAAAGTAGTAGTGGCTTGTTTAGAAAATGTAG
AAAAAGTGGCGGTGCGAGCAATTGTGCAGATTTAGCAAGTGACCAGCTTT
CTGACAAGGATAAAGCGGTTCAAGCATTCATGATCTTGTCTGTGTTAACA
TCCATTGCAGCTGTTGTTTTTGCTATCTTACATATGGTCACTGACAAAAT
CCCTGTTAAGCTGATCTCTTTGCTCATGGTCGTTATTTTCGTTCTGGCAT
TGATTGGTCTGGCAATCTTCACTGCAAATAAAGAGGACCTGGCCTCTAGT
GCTGATTACGGATGGGCTTATGGATTGGGATGGTTTGGCGCCCTAGCCGC
CCTTATTGTTGGTGTATTAGTCTTTGTACTGTTTCGTTCGTCGTGATTTA
ACGGTGATTCAAACTTAAAATCCAAAGAAATCTTGAACAATTATATACTG
TAAGCTTCATGTTATCCCAGAATCGAAATTTTCGATCAAAATATCTAATA
TTTATCATTCTAGGTATTTCTAACATTATAATTAGCACATATTTTATCCC
CTGTTGATAAACTGTTTAACTTTGTTTCCGCGTTAAGTCCGCCCTAACGC
TTTGGGCGTGGTGGCCGTTAAAATGGACAATGTTTTAGATGTTTGTAACA
TCTGGGTGGCAATATCCGAAACCATATGAATCGATTTTATCTGTAGTATT
TATAGAGCACTTTTCTAATATTTTCTTGTGTTAGTTATTTTTCAAGAAAT
TCACTTTTAAATATTCTTGACCGTTCACAACACAAAATTTTTTATTTCTT
TAACGCTCTCCATCCCGTGGGGTGTGTCGCCCCCTGCTAGAATCTTTTCA
AGTTTTTGAACCATTCACCAAAACCTTCTAAAACCAAAGGCAAAAAAATA
TTCTCAGCTTATATCATTTAGTTTTTAATATCTCTTTGACAG Coding sequence (CDS) from alignment at scaffold_456:164064..168805- >TCONS_00066537 ID=TCONS_00066537|Name=TCONS_00066537|organism=Clytia hemisphaerica|type=CDS|length=978bp|location=Sequence derived from alignment at scaffold_456:164064..168805- (Clytia hemisphaerica)
ATTTTGGCATTGAAAGTAGTAGTGGCTTGTTTAGAAAATGTAGAAAAAGT
GGCGGTGCGAGCAATTGTGCAGATTTAGCAAGTGACCAGCTTTCTGACAA
GGATAAAGCGGTTCAAGCATTCATGATCTTGTCTGTGTTAACATCCATTG
CAGCTGTTGTTTTTGCTATCTTACATATGGTCACTGACAAAATCCCTGTT
AAGCTGATCTCTTTGCTCATGGTCGTTATTTTCGTTCTGGCATTGATTGG
TCTGGCAATCTTCACTGCAAATAAAGAGGACCTGGCCTCTAGTGCTGATT
ACGGATGGGCTTATGGATTGGGATGGTTTGGCGCCCTAGCCGCCCTTATT
GTTGGTGTATTAGTCTTTGTACTGTTTCGTTCGTCGTGAATGGTGGATGT
GAAAAAAATTGGAGTAGTAGCTGCATGTGCATTCGTCTTTATCCTTCTTT
CTGCGTCAACTGGTGGCGTGGGATGGGTCACATCTGAAAATTTTGGCATT
GAAAGTAGTAGTGGCTTGTTTAGAAAATGTAGAAAAAGTGGCGGTGCGAG
CAATTGTGCAGATTTAGCAAGTGACCAGCTTTCTGACAAGGATAAAGCGG
TTCAAGCATTCATGATCTTGTCTGTGTTAACATCCATTGCAGCTGTTGTT
TTTGCTATCTTACATATGGTCACTGACAAAATCCCTGTTAAGCTGATCTC
TTTGCTCATGGTCGTTATTTTCGTTCTGGCATTGATTGGTCTGGCAATCT
TCACTGCAAATAAAGAGGACCTGGCCTCTAGTGCTGATTACGGATGGGCT
TATGGATTGGGATGGTTTGGCGCCCTAGCCGCCCTTATTGTTGGTGTATT
AGTCTTTGTACTGTTTCGTTCGTCGTGAATGGTGGATGTGAAAAAAATTG
GAGTAGTAGCTGCATGTGCATTCGTCTTTATCCTTCTTTCTGCGTCAACT
GGTGGCGTGGGATGGGTCACATCTGAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00066537-exon-scaffold_456-1575043694:168532..168805 | TCONS_00066537-exon-scaffold_456-1575043694:168532..168805 | Clytia hemisphaerica | exon |
| TCONS_00066537-exon-scaffold_456-1575043694:166838..166949 | TCONS_00066537-exon-scaffold_456-1575043694:166838..166949 | Clytia hemisphaerica | exon |
| TCONS_00066537-exon-scaffold_456-1575043694:164064..164998 | TCONS_00066537-exon-scaffold_456-1575043694:164064..164998 | Clytia hemisphaerica | exon |
| TCONS_00066537-exon-scaffold_456-1510915933:168532..168805 | TCONS_00066537-exon-scaffold_456-1510915933:168532..168805 | Clytia hemisphaerica | exon |
| TCONS_00066537-exon-scaffold_456-1510915933:166838..166949 | TCONS_00066537-exon-scaffold_456-1510915933:166838..166949 | Clytia hemisphaerica | exon |
| TCONS_00066537-exon-scaffold_456-1510915933:164064..164998 | TCONS_00066537-exon-scaffold_456-1510915933:164064..164998 | Clytia hemisphaerica | exon |
| TCONS_00066537-exon-scaffold_456-1491911889:168532..168805 | TCONS_00066537-exon-scaffold_456-1491911889:168532..168805 | Clytia hemisphaerica | exon |
| TCONS_00066537-exon-scaffold_456-1491911889:166838..166949 | TCONS_00066537-exon-scaffold_456-1491911889:166838..166949 | Clytia hemisphaerica | exon |
| TCONS_00066537-exon-scaffold_456-1491911889:164064..164998 | TCONS_00066537-exon-scaffold_456-1491911889:164064..164998 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_456 | supercontig | scaffold_456:164064..168805 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR004031 | PMP22/EMP/MP20/Claudin |
| IPR004032 | PMP22_EMP_MP20 |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016021 | integral component of membrane |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| cellular_component |
GO:0016021 |
integral component of membrane |
Blast
The following BLAST results are available for this feature:
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