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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00066523 ID=TCONS_00066523|Name=TCONS_00066523|organism=Clytia hemisphaerica|type=transcript|length=1185bp
AGATTCTACAGCTTATTCTTCAATAGATGGATAGCacatttcttatcctc
tttttccaaaattggtATAAATACACTGAAATTTAACTGGATTAATCAAT
CCAGACTTCACTCTAGATTGCTGAAGAAGTTGTTCTTTCACCAACTGAAA
GTCCATTGATAAGCAACCATGTTGAGAGTTTTGATAACCATTGCTTTACT
TGGCGTTGCTTCTGCAGCTGTTTCAACCAAGATCGCCAACTGGTGGACTA
CATTTGATCATGGTGGTTGGTCCAAATGTGCTGATGGCCATTTCCTGACT
GGTATGTGGAGAAGTGCTCGTCAGCTTGGAGATGAAAGAATCGGCAGAAT
CGAACAAGGAGATTGTAAAAGTGCTGACAGTGCATATACCGGAGATTGCA
AACAAATGGATTGCTACAAGCTGAATATCTGGtcaattttcgacaaaaaa
ggTTGGGCAACATGCAAACCTGGCTACTTTATCCAATCCATCTTTTCCAC
CAAAGGAAAAGGCCTTCACAACATCGAGGAATTCCAATGCTGTAAACCAA
GATCTAAGAAAGTCAAGCAAGGTCAATGCTACATCCAAAACGTTTGGAAA
TCCTTTGACAACAAAGGTTGGTCTAAATGCAAAGCTGGATATTACATGCA
AGGTATGTTCAGAAACAGCTGTGACAAATTGTATTGTCTTGAGGAATTCA
AATGCTGTAATATGGTCGCTACAGACTCGTCTGTCTCAACCAAGATTGCC
AACTGGTGGAGTACATTCGACCATGGTGGTTGGTCCAAATGTGCTGCTGG
ACATTTCCTGACTGGTATGTGGAGAAGTCCTCGTCAGATTGGAGATGAAA
GAATCGGCAGAATCGAACAAGGAGATTGTAAATCTGCACCAAAGAATCTT
GGATCTGGACAAGAATGCTACAAATTGAATATCTGGtcaattttcgacaa
aaaaggATGGGCAAATTGCAAACCTGGTTATTACATGCAGTCTATCTACT
CCACCAAAGGAAAGGGCCTCCACCATATTGAGGAATTCCAATGTTGCAGA
CCAAGCGGAGGGGTGACAGTTGATGGTCAATGCTACATCCAAAATGTCTG
GAAATCCTTTGACAACAAAGGTTGGTCTAAATGCAAAGCTGGATATTACA
TGCAAGGCGGCACACCCTTTAGCGTTCAATCCTTT Run BLAST on NCBI protein sequence of TCONS_00066523-protein >TCONS_00066523-protein ID=TCONS_00066523-protein|Name=TCONS_00066523-protein|organism=Clytia hemisphaerica|type=polypeptide|length=339bp
MLRVLITIALLGVASAAVSTKIANWWTTFDHGGWSKCADGHFLTGMWRSA
RQLGDERIGRIEQGDCKSADSAYTGDCKQMDCYKLNIWSIFDKKGWATCK
PGYFIQSIFSTKGKGLHNIEEFQCCKPRSKKVKQGQCYIQNVWKSFDNKG
WSKCKAGYYMQGMFRNSCDKLYCLEEFKCCNMVATDSSVSTKIANWWSTF
DHGGWSKCAAGHFLTGMWRSPRQIGDERIGRIEQGDCKSAPKNLGSGQEC
YKLNIWSIFDKKGWANCKPGYYMQSIYSTKGKGLHHIEEFQCCRPSGGVT
VDGQCYIQNVWKSFDNKGWSKCKAGYYMQGGTPFSVQSF Run BLAST on NCBI transcript from alignment at scaffold_456:755089..760510+ Legend: exonfive_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00066523 ID=TCONS_00066523|Name=TCONS_00066523|organism=Clytia hemisphaerica|type=transcript|length=5422bp|location=Sequence derived from alignment at scaffold_456:755089..760510+ (Clytia hemisphaerica)
AGATTCTACAGCTTATTCTTCAATAGATGGATAGCacatttcttatcctc
tttttccaaaattggtATAAATACACTGAAATTTAACTGGATTAATCAAT
CCAGACTTCACTCTAGATTGCTGAAGAAGTTGTTCTTTCACCAACTGAAA
GTCCATTGATAAGGTAAGACATTtcatttattaattttcttaGCAAATCT
TCCAATTTTCCAAGCCATAGGTAATCCATAGATGTCCATTCGTTTCGTTT
GATACTCCTAATTCTAGATatatattttacgtggatagcccagtaatcta
ggacttttagacagtctttcgattgttttcacggggtccacctCCAGCCG
Gcttggctatctatgaactgaacagagcattggaaggagcggggattcga
actaCGAATCCCTAgtttgagacgctgacgccttttaccacttggccatc
gctccatGGCCTACATAACAGAACTGTTGTACAAGTGACTTCAAATCTAA
AACAGTGCTCAATATAGTGGTTTGCATAGTGGTATCATAAATACATGGAA
TTCCCGTTAAAGTAAAAAGAAAGTCAGTCTTGTTGTTGAGATAATTGGGT
ATAGTACTTAATTCTTTGTGTAAATCGTAATCTCATAACATAACATAACT
ATAAAAGGATACCCACTTCTTTTTTCAGCAACCATGTTGAGAGTTTTGAT
AACCATTGCTTTACTTGGCGTTGCTTCTGCAGCTGTTTCAACCAAGATCG
CCAACTGGTGGACTACATTTGATCATGGTGGTTGGTCCAAATGTGCTGAT
GGCCATTTCCTGACTGGTATGTGGAGAAGTGCTCGTCAGCTTGGAGATGA
AAGAATCGGCAGAATCGAACAAGGAGATTGTAAAAGTGCTGACAGTGCAT
ATACCGGAGATTGCAAACAAATGGATTGCTACAAGCTGAATATCTGGtca
attttcgacaaaaaaggTTGGGCAACATGCAAACCTGGCTACTTTATCCA
ATCCATCTTTTCCACCAAAGGAAAAGGCCTTCACAACATCGAGGAATTCC
AATGCTGTAAACCAAGATCTAAGAAAGTCAAGCAAGGTCAATGCTACATC
CAAAACGTTTGGAAATCCTTTGACAACAAAGGTTGGTCTAAATGCAAAGC
TGGATATTACATGCAAGGTATGTTCAGAAACAGCTGTGACAAATTGTATT
GTCTTGAGGAATTCAAATGCTGTAATATGGTCGCTACAGACTCGTCTGTC
TCAACCAAGATTGCCAACTGGTGGAGTACATTCGACCATGGTGGTTGGTC
CAAATGTGCTGCTGGACATTTCCTGACTGGTATGTGGAGAAGTCCTCGTC
AGATTGGAGATGAAAGAATCGGCAGAATCGAACAAGGAGATTGTAAATCT
GCACCAAAGAATCTTGGATCTGGACAAGAATGCTACAAATTGAATATCTG
GtcaattttcgacaaaaaaggATGGGCAAATTGCAAACCTGGTTATTACA
TGCAGTCTATCTACTCCACCAAAGGAAAGGGCCTCCACCATATTGAGGAA
TTCCAATGTTGCAGACCAAGCGGAGGGGTGACAGTTGATGGTCAATGCTA
CATCCAAAATGTCTGGAAATCCTTTGACAACAAAGGTTGGTCTAAATGCA
AAGCTGGATATTACATGCAAGGTATGTTCAGAAACAGCTGTGACCAATTG
TATTGTCTCGAAGAATTCAGATGCTGTAGCATGAAACAAAAATGTTGAGA
GACCTAGAGACATTATGGAGAATatagtatttctttttcatcttcaatct
tATAAGGCGTTTAGGGGAATGAGTATTTAGAATTTCAATAGTCGATTTGT
AGATCATTTACCAAATATTTTATCACTTGTACTTCACTATGAGCTTTTTT
CTCACAATAGATTTACTGACTTGcattcaaaaaatacaaaaagtttcTTT
GATACTTTTCACATCCCCGTCAATACTCCaataaaaacacccccttctca
cagacccactgggaccccttcccacttggccaaaatatcgtccccttTGG
AGAactatcctccaatttttgttcccactaaaaataatcaaataatccaa
tcctcactgcaaaatatttactacttttcccatccccactgagttCTCTG
ACTTGACAACAATTGAATTTAAATCCCAATTCGTAACAAATATGACAATA
TCAATCCCCAGCAagtttcagtccattatttttatccccactggctgaaa
aagtcctaccgggtctgtgagaaggggtgtataaAAAATCTAAAGACATT
AATTGTGTTACAAATATGTTCGAACCATTGTTACATAAACTCTGTTGTTC
TGATGGTTAATCGGGACATCAAATGTCTGCTAAAAGCACCATCTCTTTCC
GTTCGTCTTTGTTTATAAATCTTTTTGAGTTCAATTCTCGGACAACTTGA
AAATATATAGAAATCATCGCAGGAAATAAAAAGGTGGAATTCAACCCCAA
AAAAATCTTGACTGAAAAGTGAACGATACGCCAGTTATTTAAGTTTTAAT
TTTGAACTCCAATTTCATGTCCCATCCGGTACAAAAGATTTCGCCTGATA
AAAAATATTAGTAGGCATGCTGAATGAAGATAAAAATGTTCAAACGAAAA
AGGAAAGATAACAGTATAGCATAGAGAAGGATAAGCTTGAAAACATGATG
AAACTTGTTTCACACTGGCTTGCCGATGTTTTAGAGCTAATAGGAGCATT
GAAATTAAGCCATGCCTAGTTCCTATAAAGATAACTTTATCTTTTTAAAG
GTAAAATCTTATGAAACAACTTCAACAAATCcgaaatttggcccaaattt
ttctaaacaatttcttttgaaaatctttaagtCTTAAATTTTAAGGATTA
CAGTATAAATCGAAAAACCTATCAAAAATTTGGTTTCgtcactttttggg
tactttcaTTCTGCATCactatgaaaaaaatcagaaaaaaaataataggc
caatcccgagaaaagctggtaacagacgaacgaacaaaaGAGCGGACGAA
CAAAGcttaaattaaaggacctccgagggaggtccaaaaagaaaattatc
tCCTAGAATGGGACAAATAGCGTaaaattttgcagtgaggataggtttat
ttgattattttcagtggggacaaaaaatggaggataattttccaccaggg
atgatattttggacaatttttccagtgggaaggggtctgtgagaaggggg
tgtcacaATAAAAAATCTGTTAACTTTCCATTTTGATCATAATATATTGT
TCTataagatgatgattttaaGATCTTTCAggatctttttttttgttcct
acctacaatcctggccaaaatatattgagaatttagcttatttcctcgtt
tttcaaaatttggaattcgggcgagaaagtcgtttttgggctaattgata
aatttattcNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNCTCTATTCgtctaacctaatttag
agcgcttccaaaatacttgtggttataagatttcgtgggaatttcccttt
tgtctcaaatattatggccaggattgtaggtatctctgaaaagaaaaaaa
ttaaaaatagccAACATTTATTTGACGATCTCACATATTTACTGAGAAAT
TTCAATGTTGACTCACAAAACTCACAAAAAAAGTATGGCATTCTAATTTT
TGCGAgttctgttgttgtttttttttccatggtGAATTTTAAAATATCTG
GCTGTAAATGACACTTTCGATATTTGGCGTGAAAGAAAGagttttatttt
agttttattcaattaaagtacatttcaaattatctggcagtaaattttca
attgcgtattacttttgatagatttcgaattagatagcgattttatactt
tttggaacggcaatccggagtggaatattatgcgtataaaatttttctaa
aattttcaaacacgaagatgaaaaactaaagaaaaaattcagcTTTTTAT
CTAGCAATGCTATAACTACCATTTTTGGGGTTGAGAAACTTCAATCTTTG
CCCATTCAgctatgaaaatctttttcgaaaaaaataattcagtcGAAAGA
TATTGGGCATGAAAGGAGGCTAGTTAAATCTTATTTTGGGACGAGGTTGC
ATAaggtttttatatattttcttttaaaacatgttgatttatgaaaatat
gaaaaaagcattttccaaaatttaatcCGAAAGCTTTGTTTTTCTCCCTT
TTTACATACACCCTTTACGATGCACTTcgaaaaacctgaaaaacgtAGAG
TATCCTTAACGACCGCGCCTAAGATatttggctttgaaaaatattaaaaa
taactttaaacTTAAAGTCTAGGATTTACAATCCTGTTGCATTGCTTTCA
ACCTTCATTCATGCTAATTCCAATAAGATTTGATATCATAAGAAATTTTT
CCCATGTGAGcgactttttggccttttttaaGAGCGTTTGTGgctaaatt
ttaataaaaattattaaaaatcataaaaaaaactaatgacaaTAAATTCG
AAAGAAAGATACTTCAGTGTATGGGTTGGTAATAAACAATATCGTCATCA
TAACATTCTCCTCTACAATAAGGACAGTTGACCAATTGTAAGGATTTGTT
GAGACAAACACTTGTACTCATCAATACATATCCATCAATACCCtaaacga
aaaaaagttaagaatgttGGGATTATAGTGTGGATTTGCATCACTAATAA
CCTTCTGaaaaatttggttgaaattcCGTCCCCGGCGTGGGAaagaatac
cctacaatttGAATTCGACTTCACCCCCTTTCGAAATTTCAATATAAAGA
TTGGCACACTTAAACTATCCCTACTGgaattttgagcttggaacaTTAGA
ATTTCTATCCATGTTGAATTTCTATAGAAAGGATATTCCACTGGGACAGT
GGGACAGGGGCGTATAAATCGACTTACTTTGACTCTTTTACAGGCGGCAC
ACCCTTTAGCGTTCAATCCTTT Coding sequence (CDS) from alignment at scaffold_456:755089..760510+ >TCONS_00066523 ID=TCONS_00066523|Name=TCONS_00066523|organism=Clytia hemisphaerica|type=CDS|length=2034bp|location=Sequence derived from alignment at scaffold_456:755089..760510+ (Clytia hemisphaerica)
ATGTTGAGAGTTTTGATAACCATTGCTTTACTTGGCGTTGCTTCTGCAGC
TGTTTCAACCAAGATCGCCAACTGGTGGACTACATTTGATCATGGTGGTT
GGTCCAAATGTGCTGATGGCCATTTCCTGACTGGTATGTGGAGAAGTGCT
CGTCAGCTTGGAGATGAAAGAATCGGCAGAATCGAACAAGGAGATTGTAA
AAGTGCTGACAGTGCATATACCGGAGATTGCAAACAAATGGATTGCTACA
AGCTGAATATCTGGtcaattttcgacaaaaaaggTTGGGCAACATGCAAA
CCTGGCTACTTTATCCAATCCATCTTTTCCACCAAAGGAAAAGGCCTTCA
CAACATCGAGGAATTCCAATGCTGTAAACCAAGATCTAAGAAAGTCAAGC
AAGGTCAATGCTACATCCAAAACGTTTGGAAATCCTTTGACAACAAAGGT
TGGTCTAAATGCAAAGCTGGATATTACATGCAAGGTATGTTCAGAAACAG
CTGTGACAAATTGTATTGTCTTGAGGAATTCAAATGCTGTAATATGGTCG
CTACAGACTCGTCTGTCTCAACCAAGATTGCCAACTGGTGGAGTACATTC
GACCATGGTGGTTGGTCCAAATGTGCTGCTGGACATTTCCTGACTGGTAT
GTGGAGAAGTCCTCGTCAGATTGGAGATGAAAGAATCGGCAGAATCGAAC
AAGGAGATTGTAAATCTGCACCAAAGAATCTTGGATCTGGACAAGAATGC
TACAAATTGAATATCTGGtcaattttcgacaaaaaaggATGGGCAAATTG
CAAACCTGGTTATTACATGCAGTCTATCTACTCCACCAAAGGAAAGGGCC
TCCACCATATTGAGGAATTCCAATGTTGCAGACCAAGCGGAGGGGTGACA
GTTGATGGTCAATGCTACATCCAAAATGTCTGGAAATCCTTTGACAACAA
AGGTTGGTCTAAATGCAAAGCTGGATATTACATGCAAGGCGGCACACCCT
TTAGCGTTCAATCCTTTATGTTGAGAGTTTTGATAACCATTGCTTTACTT
GGCGTTGCTTCTGCAGCTGTTTCAACCAAGATCGCCAACTGGTGGACTAC
ATTTGATCATGGTGGTTGGTCCAAATGTGCTGATGGCCATTTCCTGACTG
GTATGTGGAGAAGTGCTCGTCAGCTTGGAGATGAAAGAATCGGCAGAATC
GAACAAGGAGATTGTAAAAGTGCTGACAGTGCATATACCGGAGATTGCAA
ACAAATGGATTGCTACAAGCTGAATATCTGGtcaattttcgacaaaaaag
gTTGGGCAACATGCAAACCTGGCTACTTTATCCAATCCATCTTTTCCACC
AAAGGAAAAGGCCTTCACAACATCGAGGAATTCCAATGCTGTAAACCAAG
ATCTAAGAAAGTCAAGCAAGGTCAATGCTACATCCAAAACGTTTGGAAAT
CCTTTGACAACAAAGGTTGGTCTAAATGCAAAGCTGGATATTACATGCAA
GGTATGTTCAGAAACAGCTGTGACAAATTGTATTGTCTTGAGGAATTCAA
ATGCTGTAATATGGTCGCTACAGACTCGTCTGTCTCAACCAAGATTGCCA
ACTGGTGGAGTACATTCGACCATGGTGGTTGGTCCAAATGTGCTGCTGGA
CATTTCCTGACTGGTATGTGGAGAAGTCCTCGTCAGATTGGAGATGAAAG
AATCGGCAGAATCGAACAAGGAGATTGTAAATCTGCACCAAAGAATCTTG
GATCTGGACAAGAATGCTACAAATTGAATATCTGGtcaattttcgacaaa
aaaggATGGGCAAATTGCAAACCTGGTTATTACATGCAGTCTATCTACTC
CACCAAAGGAAAGGGCCTCCACCATATTGAGGAATTCCAATGTTGCAGAC
CAAGCGGAGGGGTGACAGTTGATGGTCAATGCTACATCCAAAATGTCTGG
AAATCCTTTGACAACAAAGGTTGGTCTAAATGCAAAGCTGGATATTACAT
GCAAGGCGGCACACCCTTTAGCGTTCAATCCTTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00066523-exon-scaffold_456-1491911889:755089..755251 | TCONS_00066523-exon-scaffold_456-1491911889:755089..755251 | Clytia hemisphaerica | exon |
| TCONS_00066523-exon-scaffold_456-1510915933:755089..755251 | TCONS_00066523-exon-scaffold_456-1510915933:755089..755251 | Clytia hemisphaerica | exon |
| TCONS_00066523-exon-scaffold_456-1575043694:755089..755251 | TCONS_00066523-exon-scaffold_456-1575043694:755089..755251 | Clytia hemisphaerica | exon |
| TCONS_00066523-exon-scaffold_456-1491911889:755767..756759 | TCONS_00066523-exon-scaffold_456-1491911889:755767..756759 | Clytia hemisphaerica | exon |
| TCONS_00066523-exon-scaffold_456-1510915933:755767..756759 | TCONS_00066523-exon-scaffold_456-1510915933:755767..756759 | Clytia hemisphaerica | exon |
| TCONS_00066523-exon-scaffold_456-1575043694:755767..756759 | TCONS_00066523-exon-scaffold_456-1575043694:755767..756759 | Clytia hemisphaerica | exon |
| TCONS_00066523-exon-scaffold_456-1491911889:760482..760510 | TCONS_00066523-exon-scaffold_456-1491911889:760482..760510 | Clytia hemisphaerica | exon |
| TCONS_00066523-exon-scaffold_456-1510915933:760482..760510 | TCONS_00066523-exon-scaffold_456-1510915933:760482..760510 | Clytia hemisphaerica | exon |
| TCONS_00066523-exon-scaffold_456-1575043694:760482..760510 | TCONS_00066523-exon-scaffold_456-1575043694:760482..760510 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_456 | supercontig | scaffold_456:755089..760510 + |
Blast
The following BLAST results are available for this feature:
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