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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00066509 ID=TCONS_00066509|Name=TCONS_00066509|organism=Clytia hemisphaerica|type=transcript|length=2272bp
NNAACAAAAATGACAATCGACAGGACGAGATTTTACAATACTTGAAGCGC
GTTGATGATAAACTAGATCTCATTATAAAACATTTCAATGTTCCATTCCA
TCCGTCTTCGCATGAGAATACAAACTACAATCTACGTAATGGGCGTTCCT
CTATCACTTCAAACGGGCGCCCCTCGATGGCTTCAACCTCACCAGTGGCC
AATCATTCTATACCATTCCCAAGAATCAATTTCCAAACAACTAAACCTTC
CAGTTCTTCACGAAGTAACTCGTCCTCTTTTTACACAACTTCTGATAATA
CAACCACCATACATGGTGAAAATGGACCGCAAGAAATTACTCAATATGTT
ATCTCAGATGAACTTTTAGAGTCAACTTTCTTATCGAGTCGGAATCGAGG
AAATTTTGCGAAAAAGCTTGTCTACGCTGCTTTCCCACTTGAAGAACGAC
TTGGTCGTAATTGTTATGGGCGTAAAGGTGGCTCTTTAAGCGGTCCCAAG
GAGCCGCTAGAAGTAGCCAAACTTGATGCAGTCCGGGAAGCTGTGTTCCG
AAAGTTTCCTGTTCCGGCGTCCGAGGAAGATGCTGTTTGGAAGAAAGATT
GTGTCATCGCTATTGATTCTGCGTTAAGAGCAGAAATACGACAGCGTCTT
CAACAAGATGCGAAATGTGACGACGGAGATGACAATTTcgttaaattttt
aaaacattgatATCCTATGATTCACTATTGTACTCGTGCGGTTTTTAATA
AGTTTGTTTGTCCCAGGGAATATGGATGGAAAAGGAGACGCGATTCATTT
ATTAATATTACTACAACTCACACTTAATATTTTTATTGGGTGACTGGTTG
ATGATTTATATCAGTGCagtaactccaaacaaaaataGAAACAGTTGTTA
TTTAGTATCCTTGATACATTTGACTTACTTACTTTAGGCGTGTAAACTCT
TATGAAGGGgtttttactttaaattatGTGCATCGTAAgagtttttcaac
tttttttataacttCTGCTCGTAAAGGTTTTCACGTCTaaagaaatgttt
taaatttaaaCTATCTTACTGTAAATATTCCTTTTTTACTCGCATATTCA
TATTCATgtttcttttgataaaatttcacCCAATCTTTTGAAATTGATTT
AATAATCTGTTATACTGGTACTGCTATTTTTTGAATTAGTAGATTAGTTC
GGGTTATATTAATTTAATATTAGAAATTTTCGCGACCAGAAACTTTCGAA
AGAAATCAATATGTATTGCTGATTATTATATTCtcgcaaagaaaaaaaat
ctcgcGAATGGCCCAACTCGCGAAATGTTCTGGCCGCGAAAATTTCTAAC
ATTAAATTAGCATATAAGTAAGTAAAAAGCGGGTGTGTAACGTTTTCTGA
AATTAACACGCTGGTTTTACAGTTTCTATCCAAcgttcttgaaaattttt
gttttctctcATAATAAGAAATCGGATTGACGtccataagaacatccaaa
tttgaagccttcggatgttcttgactttttgagttttaagcctaaaaatg
ttcttaacatgttcttatttacgccattttttttgagtatttttgtcgat
tttcttaagaaatcagttgttttagagtccacgcacgttcttaacatttt
ggccatggaagcctttatgttctcatatagtttgttcttttaaaaaaacg
tgtatttgcgatttattattttttcacctTTAGATATGAACTCATAATTT
AAACACGAGGTCCTCTTACTACACCGTAGTGTATCGCTTGTACATTGAGA
TCAAGAGTCACAAACCTTGGTTACTCAGATCAGAATCACCCACGCAAACT
CATCAAAGACTCAAGACTATTTTGATCCATGGAGaTAAAACTATAAATTC
TTGAGAAAACGACAATTAGAAATTACCGCTGGAGAAAATACTTATTGCAC
CCTTCATAATCGACACTAACATGCCTTCTGCTAAATGGATGAGAAAAAAA
CTTCGAGAGACGATCCCGTCCAGTGCTAAACAACAATCTTGTAAATGTTT
CGAATTATGGAGGACGTATTTCCTTCAGGGTACGGACAAAGATCGGTGGA
ATGATCAGAACGGAGCCATTGAAAAATACCAAATGTTGATTGAAGATTTG
AAATCTACGTTAGAAACAAGTTTTTCTTGTACTGGAGAAAATGTGCGctt
aaaacaaaatcaaaaggatACCGTAAAAAACATCATTCGTTGTTTAACAT
ATCGTATCGATGCCATAAGGGT Run BLAST on NCBI transcript from alignment at scaffold_456:415783..422496+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00066509 ID=TCONS_00066509|Name=TCONS_00066509|organism=Clytia hemisphaerica|type=transcript|length=6714bp|location=Sequence derived from alignment at scaffold_456:415783..422496+ (Clytia hemisphaerica)
NNAACAAAAATGACAATCGACAGGACGAGATTTTACAATACTTGAAGCGC
GTTGATGATAAACTAGATCTCATTATAAAACATTTCAATGTTCCATTCCA
TCCGTCTTCGCATGAGAATACAAACTACAATCTACGTAATGGGCGTTCCT
CTATCACTTCAAACGGGCGCCCCTCGATGGCTTCAACCTCACCAGTGGCC
AATCATTCTATACCATTCCCAAGAATCAATTTCCAAACAACTAAACCTTC
CAGTTCTTCACGAAGTAACTCGTCCTCTTTTTACACAACTTCTGATAATA
CAACCACCATACATGGTGAAAATGGACCGCAAGAAATTACTCAATATGTT
ATCTCAGATGAACTTTTAGAGTCAACTTTCTTATCGAGTCGGAATCGAGG
AAATTTTGCGAAAAAGCTTGTCTACGCTGCTTTCCCACTTGAAGAACGAC
TTGGTCGTAATTGTTATGGGCGTAAAGGTGGCTCTTTAAGCGGTCCCAAG
GAGCCGCTAGAAGTAGCCAAACTTGATGCAGTCCGGGAAGCTGTGTTCCG
AAAGTTTCCTGTTCCGGCGTCCGAGGAAGATGCTGTTTGGAAGAAAGATT
GTGTCATCGCTATTGATTCTGCGTTAAGAGCAGAAATACGACAGCGTCTT
CAACAAGATGCGAAATGTGACGACGGAGATGACAATTTcgttaaattttt
aaaacattgatATCCTATGATTCACTATTGTACTCGTGCGGTTTTTAATA
AGTTTGTTTGTCCCAGGGAATATGGATGGAAAAGGAGACGCGATTCATTT
ATTAATATTACTACAACTCACACTTAATATTTTTATTGGGTGACTGGTTG
ATGATTTATATCAGTGCagtaactccaaacaaaaataGAAACAGTTGTTA
TTTAGTATCCTTGATACATTTGACTTACTTACTTTAGGCGTGTAAACTCT
TATGAAGGGgtttttactttaaattatGTGCATCGTAAgagtttttcaac
tttttttataacttCTGCTCGTAAAGGTTTTCACGTCTaaagaaatgttt
taaatttaaaCTATCTTACTGTAAATATTCCTTTTTTACTCGCATATTCA
TATTCATgtttcttttgataaaatttcacCCAATCTTTTGAAATTGATTT
AATAATCTGTTATACTGGTACTGCTATTTTTTGAATTAGTAGATTAGTTC
GGGTTATATTAATTTAATATTAGAAATTTTCGCGACCAGAAACTTTCGAA
AGAAATCAATATGTATTGCTGATTATTATATTCtcgcaaagaaaaaaaat
ctcgcGAATGGCCCAACTCGCGAAATGTTCTGGCCGCGAAAATTTCTAAC
ATTAAATTAGCATATAAGTAAGTAAAAAGCGGGTGTGTAACGTTTTCTGA
AATTAACACGCTGGTTTTACAGTTTCTATCCAAcgttcttgaaaattttt
gttttctctcATAATAAGAAATCGGATTGACGtccataagaacatccaaa
tttgaagccttcggatgttcttgactttttgagttttaagcctaaaaatg
ttcttaacatgttcttatttacgccattttttttgagtatttttgtcgat
tttcttaagaaatcagttgttttagagtccacgcacgttcttaacatttt
ggccatggaagcctttatgttctcatatagtttgttcttttaaaaaaacg
tgtatttgcgatttattattttttcacctTTAGATATGAACTCATAATTT
AAACACGAGGTCCTCTTACTACACCGTAGTGTATCGCTTGTACATTGAGA
TCAAGGTAAGTCATTTAGTTTTAACCAGCGCTGCAAATCCTTTTATGAGT
ANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNttagcctgagcagttcct
taacaattccttattttttggaccattttcagcctcgagttccttataaa
cgtgttccttataaaaaaaaaaacgtgtattatgtACTATCGGGTACCTA
ATACCCgggggtttggaaaaaatctcaaaacttgataaaaataaaaatgt
cctggctggaaaatttttgaaaagaaggctaatacagcagaattaggaca
aaagagggaactttcaaaaacattttcccaaaaattaataagggttggaa
taagaatgtcctgggtggaaaattttcaaaaaattaattagcgggagaag
ggacggctattaagtacccgagagtaggccAGGCTTGGATAAGTAAGAAA
CTGTTGATAAACTGTCATATAAATCTTTATTGGTTAAGATTCCTGACATG
AAAATGTTCGTAAATTACTATtcctttgaaatgttttttttttcctatcA
TAATGTAAATAtaaactttacttttctttttactttaaaGAGTCACAAAC
CTTAGTTCTCAGATCAGAATNCCTATTATAATGTAAATAtaaactttact
tttctttttactttaaaGAGTCACAAACCTTGGTTACTCAGATCAGAATC
ACCCACGCAAACTCATCAAAGACTCAAGACTATTTTGATCCATGGAGGTA
CGGTACAAATAATGCTTCGACGCACAGTATGAAATCTTTTTTAAGAACCA
ATTTACTTTTGTTGAGGCCCAgctgttcttctttttttgacacTTTAAAC
CTCTATTTGTTCTTATCCTTTTTTCATTTCTTAGGTAAAATGGGGTTATT
TTTATAGGCTTTAAACTCGACAATCTTTGCTTTGGCCCTCAATTTACTTG
AAAGTCAGCAATTCTAGGATCAGTactattcttaaattgttctatttttt
gacgattttgagcCTCTATGAAATTACTAGCCGGCCCGGCGTCGTTCGAG
ACGACTCTTTACCATGATAATTAAGCTTGCTTCGCTCGCTGCTATTTTTG
AGACATTAAAGGGGGTCCGCATCGaatgtattttttacttttatgagAAA
TAGGTAACTGTTTCttgtattttctaaggaaaaggAACAAAAATACTTTC
TTTATTTAAAACATTCTaatgtatttcccaaggaaataAATGTAGAGAAA
ATTTCTTACATATTTGAGGGAAAATTaactaaaaacaaatttgttatatt
ttcaaGAAAGGAATCAAAGGAAAATcacccaaaataattttcttgaattt
ggcAAGGAAAAAATCCTAAAGCAAATTCTTGTACTTTCTAAGGAAAATCG
GCCAATACAATTAGacaatttttatataataattacTGAAGTAATTTTTT
CGCTACTTTTACCaagttgatttttcaagaaaaatcgcTCTCTGTCTCGA
AAAAAGATAAAGAATAACTATTTTGAAAGCTcattgaatagaccttttca
taaattacgtcacgaacatcacttacctcgttttgaagttattgccatgg
tgattaactcccagcggattctattaaaactactttctattcataaataa
atcatttaatgtctcatgggacataatcaccatggtaactgtttgaatac
gaggcaagtgatgttcgtgacgtaatttatgaaaaggcctatcgAAACTA
CCATTTTTAATCTATTTACAAGGAAAGAAATTTGATCGCAAACTAAGAAC
AAGCTCGGAACAATCTCAGTGTAACAGATGGCATAATTGCATTGTCTGTA
GATCCTTTAAGTAAATAAAGAATACGTATAACAACATGATAAGAACGTTG
GAAGTCTAAAAGTTTCAAttgcacgcttttttttataagaatggtgtaaa
tccatttcataaTAGAtagtcttaacttttttgggaaaataatcctaaaa
tattcttacaacattcttaggttaggatcctaattgacaatttataattt
aaaatggtctaaaaatggcTTTCTTAGCTTAAGTAGCAAAATTCtatatg
atggtgatattcttagcatattcttaattttttggccaatttcatcatgc
acattcttataaagtgtattcttataaataaaaaaagcgtgtaaaagtcg
acaagaaaccaaaatttaaaattgcatGGTTCTAACAAAAAAGCGTGTGT
TTGCATTGGAATTCACACTTGGAATTCATTTAGTAAAACGATATACAAAA
CCTACGCTTGGTTGACAGTTTATTACTACTGTTTCATTTCAATTCTTATT
GATAGAGAAAACGGTCACCATAGTTACTCAATacgaataaaaaaacaaca
cattttaaataaattatcatagtgaaataatttttattgaaTTCCCTAAT
GGGTCGAGAAAACCATTTTGAACTGTAGCGCTGTGTTTGAGGTTACCCCT
AGTAACCAATAAACATTATCACATATATTTATTTTCCTATGATTGTGATG
AGACCTTTCAAGGNGTAAATATTAtcacatttatttattttcctaTGATT
GTGATGAGACCTTTCAAGGAAAAAATCAGTATATAGAACATTGTCTATAA
CTAGTTTCAGGAGCGGCTGACGCAGACAgtaaaataaagagaaaaattca
tctTTGGCGCaaggtttttaatatttttcaaaaaaatactttcGCTACCC
ACTCCATTAGCTTTTCTCTTAGATTTTTGGAGAGTTTATTTTTGTGTGTG
GTGAATATCTCTAGATGAAATGTTACGTTTCAATAGGCTATATTGATGTG
ATTTATTCCGGTGGATGATTGGCTGAATGCCCTGTGGTTTTTTActgttt
gttttgatgaattttgTCGGTACTTTTACTTAggaataaaataatttata
aacaTTGTTTTTGGGACAACAAACTAATGTAAATTGGGATTTGCGAGTCG
GTTATTGGTTGAGTTTCTCTTCAGGTACGGTTGAGCAatcatgaaattaa
aatgataaACTTCATTATAGGAGGAGAAAATCGAAATATCTTTTCTGTTA
AGTTTTTCTATCGTGGCTTGAGTTTGCACACCGGATATGGTTTTATACTT
TGTATTATGCTTTCGGTGCGACACATTTTATGACGGTTTTATCCAAGGTT
GCTATGCTGTATGTATATTTGTTCGTTCGTGTTCTTTGATGAACTGTGCG
ACTTcctaaaacttttgttttgatttctcaTTTTGTTGTTGTAGCTTTTG
GCTGGTTATAAAGTGTCTGCTTACAGAGAAATCAAGATGGTACATGTTCA
TTTTGCGTTCCCAAAGTGCATCATTTTTCGTTTATGAATGTTAATCCAAT
TTGAGTGAGATGATTGTATTTTcaagtattatttttttattactttttag
aTAAAACTATAAATTCTTGAGAAAACGACAATTAGAAATTACCGCTGGAG
AAAATACTTATTGCACCCTTCATAATCGACACTAACATGCCTTCTGCTAA
ATGGATGAGAAAAAAACTTCGAGAGACGATCCCGTCCAGTGCTAAACAAC
AATCTTGTAAATGTTTCGAATTATGGAGGACGTATTTCCTTCAGGGTACG
GACAAAGATCGGTGGAATGATCAGAACGGAGCCATTGAAAAATACCAAAT
GTAAGCCATGCATATCTCTGTTTATTCTATTTCAATCTTTGCTACCTTCC
TACAGTAAgactttacacgtttttttattagagcaTCAAacgtttttgaa
gcctttcggatgttcttaacttttctagttttatgcctaaaaatgttttt
aacatgttcttattttcaccattttatgagtatttttatccattttccta
agaaatcgggtgtatgttttagagtccgcaaagccttaaaatgttctgaa
cttgttcttaatattttggccatcgaagccttagttcttatatagtttgt
tcttataaaaaaatgtgtaccccTTCAGAGCAGGGAACATTTGGACTCGC
AATTTTCTTTAACTAAATTGTAACTTTTAACTTTAGCTAATTATATTTTC
ATCAGGTTGATTGAAGATTTGAAATCTACGTTAGAAACAAGTTTTTCTTG
TACTGGAGAAAATGTGCGcttaaaacaaaatcaaaaggtaactttcttga
ttttttgaagaacGACAATTTTTATCGATTCGAGGCTCTCCGGCCCTCCC
CAGTCTTTTAGAATGCACAACgataattatttaaaaatcgTCTTCCAAAA
TATCCTaatcaatttttcagtttttaacaattgctgatttttttatttat
tttttcaggatACCGTAAAAAACATCATTCGTTGTTTAACATATCGTATC
GATGCCATAAGGGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00066509-exon-scaffold_456-1491911889:415783..417587 | TCONS_00066509-exon-scaffold_456-1491911889:415783..417587 | Clytia hemisphaerica | exon |
| TCONS_00066509-exon-scaffold_456-1510915933:415783..417587 | TCONS_00066509-exon-scaffold_456-1510915933:415783..417587 | Clytia hemisphaerica | exon |
| TCONS_00066509-exon-scaffold_456-1575043694:415783..417587 | TCONS_00066509-exon-scaffold_456-1575043694:415783..417587 | Clytia hemisphaerica | exon |
| TCONS_00066509-exon-scaffold_456-1491911889:418751..418829 | TCONS_00066509-exon-scaffold_456-1491911889:418751..418829 | Clytia hemisphaerica | exon |
| TCONS_00066509-exon-scaffold_456-1510915933:418751..418829 | TCONS_00066509-exon-scaffold_456-1510915933:418751..418829 | Clytia hemisphaerica | exon |
| TCONS_00066509-exon-scaffold_456-1575043694:418751..418829 | TCONS_00066509-exon-scaffold_456-1575043694:418751..418829 | Clytia hemisphaerica | exon |
| TCONS_00066509-exon-scaffold_456-1491911889:421533..421782 | TCONS_00066509-exon-scaffold_456-1491911889:421533..421782 | Clytia hemisphaerica | exon |
| TCONS_00066509-exon-scaffold_456-1510915933:421533..421782 | TCONS_00066509-exon-scaffold_456-1510915933:421533..421782 | Clytia hemisphaerica | exon |
| TCONS_00066509-exon-scaffold_456-1575043694:421533..421782 | TCONS_00066509-exon-scaffold_456-1575043694:421533..421782 | Clytia hemisphaerica | exon |
| TCONS_00066509-exon-scaffold_456-1491911889:422188..422269 | TCONS_00066509-exon-scaffold_456-1491911889:422188..422269 | Clytia hemisphaerica | exon |
| TCONS_00066509-exon-scaffold_456-1510915933:422188..422269 | TCONS_00066509-exon-scaffold_456-1510915933:422188..422269 | Clytia hemisphaerica | exon |
| TCONS_00066509-exon-scaffold_456-1575043694:422188..422269 | TCONS_00066509-exon-scaffold_456-1575043694:422188..422269 | Clytia hemisphaerica | exon |
| TCONS_00066509-exon-scaffold_456-1491911889:422441..422496 | TCONS_00066509-exon-scaffold_456-1491911889:422441..422496 | Clytia hemisphaerica | exon |
| TCONS_00066509-exon-scaffold_456-1510915933:422441..422496 | TCONS_00066509-exon-scaffold_456-1510915933:422441..422496 | Clytia hemisphaerica | exon |
| TCONS_00066509-exon-scaffold_456-1575043694:422441..422496 | TCONS_00066509-exon-scaffold_456-1575043694:422441..422496 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_456 | supercontig | scaffold_456:415783..422496 + |
Blast
The following BLAST results are available for this feature:
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