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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00066488 ID=TCONS_00066488|Name=TCONS_00066488|organism=Clytia hemisphaerica|type=transcript|length=1544bp
tgaaaatatcaaCGAAGAGATTCTTAACGTTGGAGTAATGTTCATTTGAC
ATTCCATACATAATCTTGTGTATTGTCTGTATAATAACCATATGATAtga
ggaaaaaaacaaaaacatcaatgaaaaatatataaaagttgaaacaaaat
tttgacaaagatCAGAACCGAAATGTCATTTGGATCAGACCTGTTTCAAT
ATAACACTTTAggcttttcaagtaaaaaagtATTCATTTTGTATTTCTAG
TCTGTTCAAATAAACTAGAAAAAGGAAGCCAACAGTAGAAATAAACGAGT
TCTCACATACAGAGGAGCTGACTAAGAAATGTCTCCAAACAACACCCAGA
ACACCTTTTCATCAGCAAGATTGCAGCAGCAGTCATTCCAAGACCAACAA
TTGAACATTACATCACCAACAACAATATCACTGCACGAAATTGAAATGAT
TGAGAATGTAACAGTCTGGATTCAACTCTTCTCAATCGTATTCTCATTCA
TTGGCAACTTTCTCATCATCTTTGGCACCTGTCAGATCCAACGTTTAACA
TTGAATAAAATGGTCATCAACTATTTAGCAATATGTGATCTCATGTATTC
ATTCCTACAGATTTTCATGGTCCACCGTAAATTTTACGGACATCGTTGGT
ATTTCGGCTCGTTTATATGTATACTGACAACATTATCACCTTGCGCCATC
AGCACTTCGTTTTTCATCATCACGTTTATCTCGTACGAGCGTTATCGGTC
TATAATGTATCCACTCCAGGTACGCTTAGGACGTTTGAAAAtcacatttt
tcattttcatcatctttGTTTGTTCTCTTACTCTTCATTTTCCATTCTTC
ATCCATATGGAAATATACAACGAAAATGGCTTCACAGATTGTGCTTTCAT
ATGGCATGCACCACTAAAGAAATACTGGATCGCTCTAGTTTTCGTTTTAA
CATATCCAGTCCCAATCCTAATCTTCTTGTATTGTTATGTTAATATCATC
ATTAAAGTCTCTGGACGTTCACATAAAAGTATGCCACTCCGACGAAATAT
TCATACCAAAAATAAGAAACTATGTATCACGTTAGCAACTATTGTGGTAG
TATTCGTTGTTACAACTTCTCCTAATCAGATACTGATTCTATGGGAGAAT
TTTGGTAACACCAACGCTGTTGATGCCAGGCAGACATACGTTATCCTCTA
TTCATTGTCATCATTGATTCATCTTCACGCTTTTGCGAATCCCATTATTT
ATAGTTTCACGGATGCCAAGTTTCGTCAAGTGTTgtgtttttttaaacaa
agtaaagaaaagttaagaaaaaccaTTATGATTTCAATGAGAAGGGTTGA
GAAACCAGACACTCATCATCAAGCTTTGATCATACTGGATGAGCCACATG
TGATCGAAGGACCATTGTTGATGAAAGATCTTTCATTGTAGTCCTTGTAA
ATATAGTGACTGCTACTTTAGATAcatgtacaaactttcgcgaaggTGGA
AAATTCACGAGATATGACTTTTGCAGGTTAAGcagagaaattat Run BLAST on NCBI protein sequence of TCONS_00066488-protein >TCONS_00066488-protein ID=TCONS_00066488-protein|Name=TCONS_00066488-protein|organism=Clytia hemisphaerica|type=polypeptide|length=370bp
MSPNNTQNTFSSARLQQQSFQDQQLNITSPTTISLHEIEMIENVTVWIQL
FSIVFSFIGNFLIIFGTCQIQRLTLNKMVINYLAICDLMYSFLQIFMVHR
KFYGHRWYFGSFICILTTLSPCAISTSFFIITFISYERYRSIMYPLQVRL
GRLKITFFIFIIFVCSLTLHFPFFIHMEIYNENGFTDCAFIWHAPLKKYW
IALVFVLTYPVPILIFLYCYVNIIIKVSGRSHKSMPLRRNIHTKNKKLCI
TLATIVVVFVVTTSPNQILILWENFGNTNAVDARQTYVILYSLSSLIHLH
AFANPIIYSFTDAKFRQVLCFFKQSKEKLRKTIMISMRRVEKPDTHHQAL
IILDEPHVIEGPLLMKDLSL Run BLAST on NCBI transcript from alignment at scaffold_455:541675..543218 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00066488 ID=TCONS_00066488|Name=TCONS_00066488|organism=Clytia hemisphaerica|type=transcript|length=1544bp|location=Sequence derived from alignment at scaffold_455:541675..543218 (Clytia hemisphaerica)
ataatttctctgCTTAACCTGCAAAAGTCATATCTCGTGAATTTTCCAcc
ttcgcgaaagtttgtacatgTATCTAAAGTAGCAGTCACTATATTTACAA
GGACTACAATGAAAGATCTTTCATCAACAATGGTCCTTCGATCACATGTG
GCTCATCCAGTATGATCAAAGCTTGATGATGAGTGTCTGGTTTCTCAACC
CTTCTCATTGAAATCATAAtggtttttcttaacttttctttactttgttt
aaaaaaacacAACACTTGACGAAACTTGGCATCCGTGAAACTATAAATAA
TGGGATTCGCAAAAGCGTGAAGATGAATCAATGATGACAATGAATAGAGG
ATAACGTATGTCTGCCTGGCATCAACAGCGTTGGTGTTACCAAAATTCTC
CCATAGAATCAGTATCTGATTAGGAGAAGTTGTAACAACGAATACTACCA
CAATAGTTGCTAACGTGATACATAGTTTCTTATTTTTGGTATGAATATTT
CGTCGGAGTGGCATACTTTTATGTGAACGTCCAGAGACTTTAATGATGAT
ATTAACATAACAATACAAGAAGATTAGGATTGGGACTGGATATGTTAAAA
CGAAAACTAGAGCGATCCAGTATTTCTTTAGTGGTGCATGCCATATGAAA
GCACAATCTGTGAAGCCATTTTCGTTGTATATTTCCATATGGATGAAGAA
TGGAAAATGAAGAGTAAGAGAACAAACaaagatgatgaaaatgaaaaatg
tgaTTTTCAAACGTCCTAAGCGTACCTGGAGTGGATACATTATAGACCGA
TAACGCTCGTACGAGATAAACGTGATGATGAAAAACGAAGTGCTGATGGC
GCAAGGTGATAATGTTGTCAGTATACATATAAACGAGCCGAAATACCAAC
GATGTCCGTAAAATTTACGGTGGACCATGAAAATCTGTAGGAATGAATAC
ATGAGATCACATATTGCTAAATAGTTGATGACCATTTTATTCAATGTTAA
ACGTTGGATCTGACAGGTGCCAAAGATGATGAGAAAGTTGCCAATGAATG
AGAATACGATTGAGAAGAGTTGAATCCAGACTGTTACATTCTCAATCATT
TCAATTTCGTGCAGTGATATTGTTGTTGGTGATGTAATGTTCAATTGTTG
GTCTTGGAATGACTGCTGCTGCAATCTTGCTGATGAAAAGGTGTTCTGGG
TGTTGTTTGGAGACATTTCTTAGTCAGCTCCTCTGTATGTGAGAACTCGT
TTATTTCTACTGTTGGCTTCCTTTTTCTAGTTTATTTGAACAGACTAGAA
ATACAAAATGAATacttttttacttgaaaagccTAAAGTGTTATATTGAA
ACAGGTCTGATCCAAATGACATTTCGGTTCTGatctttgtcaaaattttg
tttcaacttttatatatttttcattgatgtttttgtttttttcctcaTAT
CATATGGTTATTATACAGACAATACACAAGATTATGTATGGAATGTCAAA
TGAACATTACTCCAACGTTAAGAATCTCTTCGttgatattttca Coding sequence (CDS) from alignment at scaffold_455:541675..543218 >TCONS_00066488 ID=TCONS_00066488|Name=TCONS_00066488|organism=Clytia hemisphaerica|type=CDS|length=1113bp|location=Sequence derived from alignment at scaffold_455:541675..543218 (Clytia hemisphaerica)
CTACAATGAAAGATCTTTCATCAACAATGGTCCTTCGATCACATGTGGCT
CATCCAGTATGATCAAAGCTTGATGATGAGTGTCTGGTTTCTCAACCCTT
CTCATTGAAATCATAAtggtttttcttaacttttctttactttgtttaaa
aaaacacAACACTTGACGAAACTTGGCATCCGTGAAACTATAAATAATGG
GATTCGCAAAAGCGTGAAGATGAATCAATGATGACAATGAATAGAGGATA
ACGTATGTCTGCCTGGCATCAACAGCGTTGGTGTTACCAAAATTCTCCCA
TAGAATCAGTATCTGATTAGGAGAAGTTGTAACAACGAATACTACCACAA
TAGTTGCTAACGTGATACATAGTTTCTTATTTTTGGTATGAATATTTCGT
CGGAGTGGCATACTTTTATGTGAACGTCCAGAGACTTTAATGATGATATT
AACATAACAATACAAGAAGATTAGGATTGGGACTGGATATGTTAAAACGA
AAACTAGAGCGATCCAGTATTTCTTTAGTGGTGCATGCCATATGAAAGCA
CAATCTGTGAAGCCATTTTCGTTGTATATTTCCATATGGATGAAGAATGG
AAAATGAAGAGTAAGAGAACAAACaaagatgatgaaaatgaaaaatgtga
TTTTCAAACGTCCTAAGCGTACCTGGAGTGGATACATTATAGACCGATAA
CGCTCGTACGAGATAAACGTGATGATGAAAAACGAAGTGCTGATGGCGCA
AGGTGATAATGTTGTCAGTATACATATAAACGAGCCGAAATACCAACGAT
GTCCGTAAAATTTACGGTGGACCATGAAAATCTGTAGGAATGAATACATG
AGATCACATATTGCTAAATAGTTGATGACCATTTTATTCAATGTTAAACG
TTGGATCTGACAGGTGCCAAAGATGATGAGAAAGTTGCCAATGAATGAGA
ATACGATTGAGAAGAGTTGAATCCAGACTGTTACATTCTCAATCATTTCA
ATTTCGTGCAGTGATATTGTTGTTGGTGATGTAATGTTCAATTGTTGGTC
TTGGAATGACTGCTGCTGCAATCTTGCTGATGAAAAGGTGTTCTGGGTGT
TGTTTGGAGACAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00066488-exon-scaffold_455-1491911889:541675..543218 | TCONS_00066488-exon-scaffold_455-1491911889:541675..543218 | Clytia hemisphaerica | exon |
| TCONS_00066488-exon-scaffold_455-1510915933:541675..543218 | TCONS_00066488-exon-scaffold_455-1510915933:541675..543218 | Clytia hemisphaerica | exon |
| TCONS_00066488-exon-scaffold_455-1575043694:541675..543218 | TCONS_00066488-exon-scaffold_455-1575043694:541675..543218 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_455 | supercontig | scaffold_455:541675..543218 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0007186 | G-protein coupled receptor signaling pathway |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0004930 | G-protein coupled receptor activity |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016021 | integral component of membrane |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0007186 |
G-protein coupled receptor signaling pathway |
| cellular_component |
GO:0016021 |
integral component of membrane |
| molecular_function |
GO:0004930 |
G-protein coupled receptor activity |
Blast
The following BLAST results are available for this feature:
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