TCONS_00066471 (transcript) - C. hemisphaerica

Overview
NameTCONS_00066471
Unique NameTCONS_00066471
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length772

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00066471 ID=TCONS_00066471|Name=TCONS_00066471|organism=Clytia hemisphaerica|type=transcript|length=772bp
GATTTATGCTAAGgcataaataagcaaaaaagattGTAACCAAATCAATA
CCAAGCTACAGTTTATTCATATACCAAAGACATGAAGTTAGATAACTTAT
GATGAGAAATAATTTGAGaatgtttgtctttgtttttctcttcatctgtc
tgtctgtctgtaactTCAAAGATGTTcggtttttttgggtgaaaccTGGG
GTAGTTTTTGTTTTAACTAATAGGTTTACAGTTTCTCAGGCTTtgtcatt
tcaaaattccagaatcaTTCCAAAATTGCACTcctaaaaagtactttagg
cATGTGATGAGGAGTGCTATGAATAACTTTAGAAGTAAAATCTAAATTTA
TGGCCTTTGTCTGATCGCACTCCTCAAgaattttaggtgtgtgtgaaTCG
TTAATTCAAACAACTACGACccaagtttttctttatacatACCATAGATA
CAACAGAACAtaaatttatctttaaaaagctctaaacactaaaataaaat
cctccaaAAGCCAAAACAAGGTTGGAAACACAAAAATCCTTCCTCTCGCT
AAGGCCGTCATCTtggtttgaaaatgtttaaatcaaaatgtctcatgGAT
TTCAGCGAATGGCAACATTTAGTGGGAAAGAGGATTTGCTGACTTTTAAg
cagcctctataagaaactttttctttaaacgatgagcagaagcctagaga
CTTCCAAAGACTTAAAGGGGagtcttttattttcaatttcctaAAGGGGG
TTACCACTTAACAGGGGGGATT
Run BLAST on NCBI

transcript from alignment at scaffold_455:49394..50165

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00066471 ID=TCONS_00066471|Name=TCONS_00066471|organism=Clytia hemisphaerica|type=transcript|length=772bp|location=Sequence derived from alignment at scaffold_455:49394..50165 (Clytia hemisphaerica)
AATCCCCCCTGTTAAGTGGTAACCCCCTTtaggaaattgaaaataaaaga
ctCCCCTTTAAGTCTTTGGAAGtctctaggcttctgctcatcgtttaaag
aaaaagtttcttatagaggctgcTTAAAAGTCAGCAAATCCTCTTTCCCA
CTAAATGTTGCCATTCGCTGAAATCcatgagacattttgatttaaacatt
ttcaaaccaAGATGACGGCCTTAGCGAGAGGAAGGATTTTTGTGTTTCCA
ACCTTGTTTTGGCTTttggaggattttattttagtgtttagagcttttta
aagataaatttaTGTTCTGTTGTATCTATGGTatgtataaagaaaaactt
ggGTCGTAGTTGTTTGAATTAACGAttcacacacacctaaaattcTTGAG
GAGTGCGATCAGACAAAGGCCATAAATTTAGATTTTACTTCTAAAGTTAT
TCATAGCACTCCTCATCACATgcctaaagtactttttaggAGTGCAATTT
TGGAAtgattctggaattttgaaatgacaAAGCCTGAGAAACTGTAAACC
TATTAGTTAAAACAAAAACTACCCCAggtttcacccaaaaaaaccgAACA
TCTTTGAagttacagacagacagacagatgaagagaaaaacaaagacaaa
cattCTCAAATTATTTCTCATCATAAGTTATCTAACTTCATGTCTTTGGT
ATATGAATAAACTGTAGCTTGGTATTGATTTGGTTACaatcttttttgct
tatttatgcCTTAGCATAAATC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_041584XLOC_041584Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00066471-exon-scaffold_455-1491911889:49394..50165TCONS_00066471-exon-scaffold_455-1491911889:49394..50165Clytia hemisphaericaexon
TCONS_00066471-exon-scaffold_455-1510915933:49394..50165TCONS_00066471-exon-scaffold_455-1510915933:49394..50165Clytia hemisphaericaexon
TCONS_00066471-exon-scaffold_455-1575043694:49394..50165TCONS_00066471-exon-scaffold_455-1575043694:49394..50165Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_455supercontigscaffold_455:49394..50165 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.0414	0.836999	0.863577	0.632746	1.42523	0.995082	1.41523	2.18901	0.694995	0.886108	1.93813	0.939206	1.19402	1.92882	1.40486	1.18352	1.51401	1.91827	1.36845	0.464407	1.2312	1.07733	1.07926	1.65424	1.62382	1.70058	0.994008	0.8648	1.24581	0.590483
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00066471 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top