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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00066457 ID=TCONS_00066457|Name=TCONS_00066457|organism=Clytia hemisphaerica|type=transcript|length=529bp
taaaaattgAAGGATCGATACAGAAAAGGCGCAAAAAGGAATTTCCGGAT
GCTTAAATGCTTGGGAATGGatcaaaaacctgaaaaagaaaacaaaagtg
actgAAATGTAGAAAAGGGTATAACATTTAAATTCAAGATGCCATCAGCC
ATTCAAGAACCAAGCATTATTGATGTTTGGAATTACAACATTGATGaaga
atttgccaaaattagagATACACTGGAAAAATTTCCTTATGTTGCTATGG
ATACTGAATTCCCTGGAGTTGTTGCAAGACCTATTGGTGATTTCAAAAGC
TCTTCAGATTATCAATACCAATTATTAAGGTGTAATGTAGATTTACTGAA
AATCATTCAAATCGGATTCACATTTTATAACGATAAAGGGGAACAACCAA
CAAACGGATCCACCTGGCAGTTCAATTTCACTTTCAATCTTACGGAAGAT
ATGTATGCACAAGATTCAATTGATNATATGGTATTtatgacccagtttga
atttgtttacatttggtttgaactTGGTG Run BLAST on NCBI transcript from alignment at scaffold_455:333797..335515- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00066457 ID=TCONS_00066457|Name=TCONS_00066457|organism=Clytia hemisphaerica|type=transcript|length=1719bp|location=Sequence derived from alignment at scaffold_455:333797..335515- (Clytia hemisphaerica)
TAAAAATTGAAGGATCGATACAGAAAAGGCGCAAAAAGGAATTTCCGGAT
GCTTAAATGCTTGGGAATGGGTGAGTTCCGGTTCAAGCGTATTAGACTTT
TACTGAAATTCCTCTCAAAATTTAGATGTTCAGCTATCAGGTCTGGAAAG
TCGGAGAGATTTAACATTAATTTGCTCCTTTTAGATCAAAAACCTGAAAA
AGAAAACAAAAGTGACTGAAATGTAGAAAAGGGTATAACATTTAAATTCA
AGATGCCATCAGCCATTCAAGAACCAAGCATTATTGATGTTTGGAATTAC
AACATTGATGAAGAATTTGCCAAAATTAGAGATACACTGGAAAAATTTCC
TTATGTTGCTATGGTAAAAGTTTTACATGTTAACTGTTTCTTTTTGCTGC
AAGTGTGTATTTTCTATAATTAAGTTCATTTGTATCCCGTTTTTTTTTTA
CCTAAACCTTAAATGCTTTATTTCTTGTTCATATCAGTACACAAAATGTC
AAGTAATATAATTGAGTAGATTTTTAAAAGAATATACTTTATGTTACTTC
CTTATCATATCTTTCCTGTTATCTTTAGGATACTGAATTCCCTGGAGTTG
TTGCAAGACCTATTGGTGATTTCAAAAGCTCTTCAGATTATCAATACCAA
TTATTAAGGTGTAATGTAGATTTACTGAAAATCATTCAAATCGGATTCAC
ATTTTATAACGATAAAGGGGAACAACCAACAAACGGATCCACCTGGCAGT
TCAATTTCACTTTCAATCTTACGTAAGTACGCTCTTATTCTGTTGAAGCT
GGATTCACCATAGTCTGGAGATCCATACTCTCTAACCAAAACTTACACCA
TCCAAGCAAATATCCAATCAGAAACTACTCAGTGAGAATATGGTATTTAT
GACCCAGTTTGAATTTGTTTACATTTGGTTTGAACTTGGTGCCAAAAAAA
GCCGTTGATAAGGCTGCCAATCAGATTCACGCAGTTCCAATCAAAACAAT
AATATCACGCACGTGACTTCAACCATTGTTCAACAGCCAATAAAATTCTG
CGCCAGGATCCTGTCTTAATTTAATACAGGGTTCAGACAGACCCTGGAAA
ACCTGGAAATATGATAAATTTTCAGAAAAATCAGGGAAACTCAGGGAAAC
CCAGGGAANCCAGGATCCTGTCTTAATTTAATACTCGGCCTACTGCTGTC
TTTTTACTCTGTTTTTTCGTGTCAAGTCCGGTACACACGTCAAAGTTTTT
ATATCTAGACAGTGTAGGCCAAGCCTCTCAGCTAAATTCACCATAGTGCT
GATTGTAACATTTCAATCCAGAGAATATTTTTTCATGCCATAAAGAAAAT
ATTGAAAGTGTGTGGATACCCCCTGGAAAATGGTAAAATTTCCAAAAGTA
CCCTTGGAAAAGTTCTTTTCATACATTGAAGTGAGGGTGGACGAACTAAA
ATCAGGCTTTTTATCCCCTGGAAATTTTAGAAACTTTTACCCCTTTGGAA
AGATGAAAAACACCGCTTGAAAATTTTTCTCGGACTACCCACTGGAAATG
TTCGTCCATGGATGAGTTGCAATTGATGTAAGATTTATGACAATTCAATG
TTGAAAATAGTTTAACAAATTGTATGTTTTCAGGGAAGATATGTATGCAC
AAGATTCAATTGATNATATGGTATTTATGACCCAGTTTGAATTTGTTTAC
ATTTGGTTTGAACTTGGTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00066457-exon-scaffold_455-1575043694:335446..335515 | TCONS_00066457-exon-scaffold_455-1575043694:335446..335515 | Clytia hemisphaerica | exon |
| TCONS_00066457-exon-scaffold_455-1575043694:335153..335331 | TCONS_00066457-exon-scaffold_455-1575043694:335153..335331 | Clytia hemisphaerica | exon |
| TCONS_00066457-exon-scaffold_455-1575043694:334744..334937 | TCONS_00066457-exon-scaffold_455-1575043694:334744..334937 | Clytia hemisphaerica | exon |
| TCONS_00066457-exon-scaffold_455-1575043694:333797..333882 | TCONS_00066457-exon-scaffold_455-1575043694:333797..333882 | Clytia hemisphaerica | exon |
| TCONS_00066457-exon-scaffold_455-1510915933:335446..335515 | TCONS_00066457-exon-scaffold_455-1510915933:335446..335515 | Clytia hemisphaerica | exon |
| TCONS_00066457-exon-scaffold_455-1510915933:335153..335331 | TCONS_00066457-exon-scaffold_455-1510915933:335153..335331 | Clytia hemisphaerica | exon |
| TCONS_00066457-exon-scaffold_455-1510915933:334744..334937 | TCONS_00066457-exon-scaffold_455-1510915933:334744..334937 | Clytia hemisphaerica | exon |
| TCONS_00066457-exon-scaffold_455-1510915933:333797..333882 | TCONS_00066457-exon-scaffold_455-1510915933:333797..333882 | Clytia hemisphaerica | exon |
| TCONS_00066457-exon-scaffold_455-1491911889:335446..335515 | TCONS_00066457-exon-scaffold_455-1491911889:335446..335515 | Clytia hemisphaerica | exon |
| TCONS_00066457-exon-scaffold_455-1491911889:335153..335331 | TCONS_00066457-exon-scaffold_455-1491911889:335153..335331 | Clytia hemisphaerica | exon |
| TCONS_00066457-exon-scaffold_455-1491911889:334744..334937 | TCONS_00066457-exon-scaffold_455-1491911889:334744..334937 | Clytia hemisphaerica | exon |
| TCONS_00066457-exon-scaffold_455-1491911889:333797..333882 | TCONS_00066457-exon-scaffold_455-1491911889:333797..333882 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_455 | supercontig | scaffold_455:333797..335515 - |
Blast
BLAST of TCONS_00066457 vs. Swiss-Prot (Human)
Match: CNOT7 (CCR4-NOT transcription complex subunit 7 OS=Homo sapiens GN=CNOT7 PE=1 SV=3) HSP 1 Score: 169.859 bits (429), Expect = 1.361e-51 Identity = 79/117 (67.52%), Postives = 94/117 (80.34%), Query Frame = 1
Query: 139 MPSAIQEPS--IIDVWNYNIDEEFAKIRDTLEKFPYVAMDTEFPGVVARPIGDFKSSSDYQYQLLRCNVDLLKIIQIGFTFYNDKGEQPTNGSTWQFNFTFNLTEDMYAQDSIDXMV 483
MP+A + S I +VW N+DEE KIR + K+ YVAMDTEFPGVVARPIG+F+S++DYQYQLLRCNVDLLKIIQ+G TF N++GE P STWQFNF FNLTEDMYAQDSI+ +
Sbjct: 1 MPAATVDHSQRICEVWACNLDEEMKKIRQVIRKYNYVAMDTEFPGVVARPIGEFRSNADYQYQLLRCNVDLLKIIQLGLTFMNEQGEYPPGTSTWQFNFKFNLTEDMYAQDSIELLT 117
The following BLAST results are available for this feature:
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