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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00066440 ID=TCONS_00066440|Name=TCONS_00066440|organism=Clytia hemisphaerica|type=transcript|length=2009bpRun BLAST on NCBI protein sequence of TCONS_00066440-protein >TCONS_00066440-protein ID=TCONS_00066440-protein|Name=TCONS_00066440-protein|organism=Clytia hemisphaerica|type=polypeptide|length=493bp MGTGSSVPLDNGKESRNKKQSNIRSQFKKEFGTIKKDDLVEDDFNNNDNLRun BLAST on NCBI transcript from alignment at scaffold_455:502251..541397+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00066440 ID=TCONS_00066440|Name=TCONS_00066440|organism=Clytia hemisphaerica|type=transcript|length=39147bp|location=Sequence derived from alignment at scaffold_455:502251..541397+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_455:502251..541397+ >TCONS_00066440 ID=TCONS_00066440|Name=TCONS_00066440|organism=Clytia hemisphaerica|type=CDS|length=13338bp|location=Sequence derived from alignment at scaffold_455:502251..541397+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00066440 vs. Swiss-Prot (Human)
Match: SYT7 (Synaptotagmin-7 OS=Homo sapiens GN=SYT7 PE=1 SV=3) HSP 1 Score: 100.138 bits (248), Expect = 1.992e-22 Identity = 73/233 (31.33%), Postives = 119/233 (51.07%), Query Frame = 2
Query: 545 RSIVGEAEVAIKYNVSERCLLVKIGRAKGLHADDLRFPS-PFIIVDLYQRSTPNEKLTQQTRTKNSTCNPIFQEILIFP-MGEESIANSHLKISIWDKISGRDNDFLGETVVDLCKLNLNSGNLLWYKLKPQTDVTIT-GDLDVTLTFDPSINNLKVLLHSANNVKVADNNGATSFPYVRVYVTGIPAKQESK---VMKETLNPEWEELFEFDVHAEEFSRRIVILTVLSENQ 1225
R +G + ++ YN E L VKI +A+ L A D S PF+ + L P++K +T+ K NP + E +F E + L + + D ND +GE + L K++L W LKP +D + + G+L ++L ++PS N++ V + A N+K D G TS PYV+V++ + E K MK LNP + E F FD+ E+ +I+TV+ +++
Sbjct: 133 RENLGRIQFSVGYNFQESTLTVKIMKAQELPAKDFSGTSDPFVKIYLL----PDKKHKLETKVKRKNLNPHWNETFLFEGFPYEKVVQRILYLQVLDYDRFSRNDPIGEVSIPLNKVDLTQMQTFWKDLKPCSDGSGSRGELLLSLCYNPSANSIIVNIIKARNLKAMDI-GGTSDPYVKVWLMYKDKRVEKKKTVTMKRNLNPIFNESFAFDIPTEKLRETTIIITVMDKDK 360 The following BLAST results are available for this feature:
BLAST of TCONS_00066440 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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