TCONS_00066438 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00066438
Unique Name	TCONS_00066438
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	2809

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at scaffold_455:429177..446218+

transcript sequence

>TCONS_00066438 ID=TCONS_00066438|Name=TCONS_00066438|organism=Clytia hemisphaerica|type=transcript|length=2809bp
ATTTTAGTGAAGATAAAACGAAATCAATTATGGAACCAAAAACGGATTAT
TGTAATCCCTGGAAAGTATTTGGCTACATGTCATTACTTTATTTCTTCTA
TTCAATATTTGGAATCTTGTTGTCGTTTTTATTGGTGGGCAGTCTTGTTT
ATTTCACTGATGGTTTGAAAGATTTGGCTTTCGCTAAACGAATTATCATC
AGAGACTGTTTTTGGTTCTGGAAGTTTGCTACCGTGTTTATACCCAAGAC
GATCAAGAACATCAAGAAGACACCAAACCAGATGGTTTCTGAGACAGTCC
AACGACACCCAAGCAAGAAAGCCCTTATAGATGCCGAGACTGGACGATCT
TTAACTTTCAACGATATCCAAGTCTTCATCAATAAGATTGCTAATCTTTT
TAAAAGCTCTGGATATAAACCTGGAGATAAGGTCGCCCTACTGATCGATA
ATGAGTTAGAATATGTTCCCTTATGGTTAGGATTGAACAAAGTTGGTATC
CAAGTTGGTTTAATCAACTATAACCTTCATGGCAAGAGTTTGGAACATTG
TTTAACTGTGGTTGACTTTAAAGGTATTATCTGTAGTTCCTCTTTAGAAG
AGATTCTAAAGGACATTGGATTTCTTAACAAACCAGAATATGAGATATTC
ATTTTTGATGATGGTAAGACCTCGATAGATTCTTCTAGCCAAAATCTACA
ATCCTTAATGGAAAATGCGTCGATTGAAGCCCCGGAGGAATATTTGTTCG
GACTTAGAGAAACTTGTATTCTTATGTATACATCTGGTAGCACTGGACGG
CCAAAAGCAGCAAAAATGACGAAGGATAAAATCATGCGTTTTTTCATCTT
GTTTCCCTTGCTATCAAACCTTCAATCTGATGATATTGCATACAATACCT
TACCACTTTATCATGGTAGTGGTGGCTTGGTGTTTGCGTCGCAATGGTGT
TTTATTGGTTGTACCACAATTATCAGGAAGAAGTTCAGCGCTTCTCGATT
CTTTACTGATTGCATCAAATATGATGTCAGTTACGTTGGTTATATCGGTG
AACTGTGGAAATATCTTCTTTCACAACCAGTAAGAGATACTGATAGGCAA
CACAAGGTTCAAAAGGCTCTCGGAAATGGACTACGATCTAGCATGGTTCC
ACAGGTCAAAGAAAGGTTCGGGATTgataagatttttgaattttacggCG
CAACTGAGGGCAATTGTGGACTGGTAAATATTGATAATGTTTCTGGATCT
GttggtttctatttcatttTGTTTCCCTTTTTTAACACTTCGTGTTTGGT
GAAAGCGGACGTCGAAACTGGCGAGATTATCAGAAATGAGAATGGTCGTG
CTATCCTTTGCAAACCTGGTGAAGTTGGGACCTTGATTGGTGTTATCAAC
AACAAGGCTAATTTTGATGGATATGTCAATAATGAAAAGGAAACCAACAA
AAAGTTGAGAAGAAATCTGTTCAAGGAAGGTGACTCTGCATTTATCTCTG
GCGACCTCTTGGTTATGGATGAATATCGCAATGTGTTTTTCGTTGACCGG
ATTGGCGATACCTTCCGTTGGAGAGGTGAGAATGTTGCCACAACTGAAGT
TGAAAATATCATGTCATCTGTAGTCAGCACTGCTGAAGATGTGGTCGTTT
ATCCAGTACCTATACCAGGAGAAGGGGGAAATGCTGGCATGGCTTACATT
CGAGAAAAAGGAAACCAACAGTTTTCAATCAAAGGTGTATCGCTCAAAGT
CTGTTAAAAGAATTACCAAAATATGCCATTCCAATGTTTATCCGTGTCGG
TCGAAATCTTGATCAAACTGGTACCTTCAAATATCAAAAGAGCGcattga
agaaagaaaaatatgatttgAAGAGCTGCAATAAAGATGATGTCATTTAT
GTCTATGACGTCACCaataaagattacgtcattctCGATGCAGAATTACA
ACAGAACATCGAAGATGGAAACATGAGATTCTAATTGACATCATTTGAGC
TTACTATTTTTTACAAAGCAATTTTTTGTAGGGACAAATACAATAAGGCT
TTTTTACAGATCAACATTTTCATCTGTTGCTACTTTCATTCGTTCATTCg
tcttttattgttttttttgtttgttcgtTCATTCCttgatttgtttattt
gtttttttattcgtTCATTTGTTTATCTGTTCATTTGTTTGTTCATTCCT
CCATTTGTTTATTTGCTCATTCCTCCattcgttcattcattcatccattC
GTTCATTCATCAACTCATTCATTCAACCATCTGTCTATTTATCCACTCAG
TTTATTCGTTCATTCATTCGTTTTTTCGTTTATTTGTTTATTCGTTCATT
TATTCATTCGCTCATTCGCATATACTTACTGTTTTCCATCCATTTATTCA
TCCCTTCATTTAATATAACAAATattgaatttatatttttcatttggaAA
ACCTTTttagatttcatttttcttgatatttcaGTAATATTTCAGGTTTA
GGTAAATTATGAACAACTAGGAGTATCAATTTTACGCTGTAAGAATATCT
ATATTTCTTGCAGCCACAGTAGAGTAGTAGTTATCAGTCTTGACGGTCGT
TTAGAAGGTCGgtgttcgattcccactcagtGTTGTGATTCagttggcaa
gtgaatgtacctttgCCCGGGCCAAGCCATGCCATGTGATGGGAATTGGG
TAGACAGAAACTGGgaaaaataagagatttccaatcctggaaatatcatg
aaatatgatatttcctaaactttggaaatatagaaaagtcaaatttttat
atttacgaa

Run BLAST on NCBI

transcript from alignment at scaffold_455:429177..446218+

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00066438 ID=TCONS_00066438|Name=TCONS_00066438|organism=Clytia hemisphaerica|type=transcript|length=17042bp|location=Sequence derived from alignment at scaffold_455:429177..446218+ (Clytia hemisphaerica)
ATTTTAGTGAAGATAAAACGAAATCAATTATGGAACCAAAAACGGATTAT
TGTAATCCCTGGAAAGTATTTGGCTACATGTCATTACTTTATTTCTTCTA
TTCAATATTTGGAATCTTGTTGTCGTTTTTATTGGTGGGCAGTCTTGTTT
ATTTCACTGATGGTTTGAAAGATTTGGCTTTCGCTAAACGAATTATCATC
AGAGACTGTTTTTGGTTCTGGAAGTTTGCTACCGTGTTTATACCCAAGAC
GATCAAGAACATCAAGAAGACACCAAACCAGATGGTTTCTGAGACAGTCC
AACGACACCCAAGCAAGAAAGCCCTTATAGATGCCGAGACTGGACGATCT
TTAACTTTCAACGATATCCAAGTCTTCATCAATAAGATTGCTAATCTTTT
TAAAAGCTCTGGATATAAACCTGGAGATAAGGTCGCCCTACTGATCGATA
ATGAGTTAGAATATGTTCCCTTATGGTTAGGATTGAACAAAGTTGGTATC
CAAGTTGGTTTAATCAACTATAACCTTCATGGCAAGAGTTTGGAACATTG
TTTAACTGTGGTTGACTTTAAAGGTATTATCTGTAGTTCCTCTTTAGAAG
AGATTCTAAAGGACATTGGATTTCTTAACAAACCAGAATATGAGATATTC
ATTTTTGATGATGGTAAGACCTCGATAGATTCTTCTAGCCAAAATCTACA
ATCCTTAATGGAAAATGCGTCGATTGAAGCCCCGGAGGAATATTTGTTCG
GACTTAGAGAAACTTGTATTCTTATGTATACATCTGGTAGCACTGGACGG
CCAAAAGCAGCAAAAATGACGAAGGATAAAATCATGCGTTTTTTCATCTT
GTTTCCCTTGCTATCAAACCTTCAATCTGATGATATTGCATACAATACCT
TACCACTTTATCATGGTAGTGGTGGCTTGGTGTTTGCGTCGCAATGGTGT
TTTATTGGTTGTACCACAATTATCAGGAAGAAGTTCAGCGCTTCTCGATT
CTTTACTGATTGCATCAAATATGATGTCAGTTACGTTGGTTATATCGGTG
AACTGTGGAAATATCTTCTTTCACAACCAGTAAGAGATACTGATAGGCAA
CACAAGGTTCAAAAGGCTCTCGGAAATGGACTACGATCTAGCATGGTTCC
ACAGGTCAAAGAAAGGTTCGGGATTgataagatttttgaattttacggCG
CAACTGAGGGCAATTGTGGACTGGTAAATATTGATAATGTTTCTGGATCT
GttggtttctatttcatttTGTTTCCCTTTTTTAACACTTCGTGTTTGGT
GAAAGCGGACGTCGAAACTGGCGAGATTATCAGAAATGAGAATGGTCGTG
CTATCCTTTGCAAACCTGGTGAAGTTGGGACCTTGATTGGTGTTATCAAC
AACAAGGCTAATTTTGATGGATATGTCAATAATGAAAAGGAAACCAACAA
AAAGTTGAGAAGAAATCTGTTCAAGGAAGGTGACTCTGCATTTATCTCTG
GCGACCTCTTGGTGATGGATGAATATCGTAATGTGTTTTTCGTTGACCGG
ATTGGCGATACCTTCCGTTGGAGAGGTGAGAATGTTGCCACAACTGAAGT
TGAAAATATCATGTCATCTGTAGTCGGCACTGCTGAAGATGTGGTCGTTT
ATCCAGTACCTATACCAGGTGAAGGAGGGAATGCTGGCATGGCTTACATT
CGAGAAAAAGAAGACCAGCAGTTTTCAATCAAAGGTGTCGCTCAAAGTCT
GTTGGAAGAATTACCAAAATATGCTATTCCAATGTTCATTCGTATTGGTC
GAAATCTTGATCAAACTGGTACCTTCAAATATCAAAAGAGCGCcttgaag
aaagaaaaatatgatctgaAGAGCTGCAATAAAGATGATGTCATTTATGT
CTATGACGTCACAAAGAAAGACTACGTCATTCTTGATGCAGAACTtcaag
agaaaattgaaaaaagtcaaatgagATTCTAAAAGTATTCAGCTTTCACA
CATCTCAAACTATAGGTTGTTAATTTCACTCATTTTATTGTGGCGTTTAT
ACTCAATTGAAACACTTTGCCTCTATTGTAAATATCTATGACCATGTTGA
GACGTTACAGctccgttccgttccgttccgttccgaaacgaaacggatCT
GAAACAAGCGTGAACATCAAAATTCGAACCGTCAAGAATAAAGGCgttac
aaaacaaaacagatcgaaacagtttcactccacttttttcatcggaacgg
aactgctccgttttcttgttCCGAAACGTTCCAAAACCAATATGAGCACA
CTCGATTCGTAACGAAaatacagtgccgtaggaagcattttcatattggg
agggctgaagtttagtgacaccgcgagggccaaccatggtttggcccgag
ggggaaaattttgaaaatttgagctctagattgcttaaaaatacactcNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNcccccccccc
agttgctacggcactgaaaTAGTGCCGGAGCGAAAcagaacagtaacgtg
tgaacatggtctataTCAATACATATAACTTCACTACAAGTACAGAGCTG
CATTACCCATTAGAGATATGTACAAATTATTACCTTTTCAAAACACttgc
aaaaaaaagaacaaaaaaacagGAATTTTAAGAATATTGATGTAGAGTGG
GAGGTTCTTTCATcatactcaattttttttatcttcttgGTGGGGGGTCT
AATTAATGCAAGCATGAttatgattttgataatttttttattgcatccaa
tgaaaaatattgtaaaaaaaaacttaaattttactGGAAAATATTCatgt
gttttaattttttttgaatagaCTTTTCTCATTAGTTGGACATCTATAGT
TGCATGCGTTTAAGATTGTCAGGGTTAATGCCTGTAAGCATCCTCTATCA
TTGACATTAAAAACTTCTGTACTCGGATCAAGGAATTATAAGAGGCACTG
GATAAATGACTCATATaacggtggagagcgactattgtatttcctttgtt
tcagaaaataattgatgttctagctttgtccgcaaaggacaactgtcatg
gcggctcaaaggtatctgatttttaaaaatgtttattaatctcattttaa
aaaagttctctagcgttttcttttcgtacctttgcagggaaaaaactttg
aaagtaaggcAAGAATACCaagatacatttgtgaaatctaatgtgagaaa
aacatcattagacaagaaaaatcaaacaaaatgcttatagtaacacgaaa
ttttcaatttggaatatcttttcaaaactgtTACCACAAGAGCTAAAAGT
AACAAACATTAGACTTGAATGTCTTCTTGGtgtcactgtggtatgaaaat
cttttggaggcgCGTGGTGGCAaggtagtttttttttttggttgaagttt
gaaaatttccggtgtcaacattcaatttcttatacataacacatcttttg
catctttctcacaacttgaaacgtcataacgacatatataattagcaatt
aaataaaagaatctgactctcacaggacaATATTAAGTCTCTTTGGGAaa
tggatgagtgattttcgataaattAAAAGgtttcgaaaaatcatttaatg
agggaaggagagtgaacaataatatcatttcTGCGGACttagctagaaca
tgagaaatcagcaaaaatcagatacttgtatatccagtgtataataaatc
cttgctcGGATAGGTTGCCTTTGATGCAAATCTATATAGGAAAGTGAGCT
AGTTGTTCCTATCCAGGGATGAAGGGACATATTTGCCTCcccttttttac
tttatttacttCAGTAAAGACATCTCTGTTTCATTGCAAACGGAACTATA
CAGTGGACTCTCTctaactcgaacacgcatggGGAACGttaacttgttcg
agttatggagtaaggtttatgagGCATTGTTAACCGAGGGAACCAGAAAC
TCCAGAAAAatcgttcgagttaaggagacattcgagttgcagaggttcga
gttatggacaCTCCACCGTAACTCTATACCTTCAGTCTTATAAGGgcaaa
tttgattgaaaagatATCATATTGTGGGTGGTCCAACTTAACTGAGTATT
AGCTACTGTACTAATTATAGCATATTTCTTTTTATAGATCTGAATATAAC
ACAAAATAGGAATCAAAATGGCTCCGTGTGATCCATGGAAAGTATTTGGC
TATGTGTCATTACTTTATTACTTCTATTCAATACTTGGAATCAAGATGTC
GTTCATATTGGTCAGCAGTCTTGTCTATTTCACTGATGGTTTGAAAGATT
TGGCTTTCGCTAAACGAATTATCATCAGAGATTGTTATTGGTTCTTTATT
ACTTTGACCAGAGTTGTTCCAAATAtgttgaaaaacaaagaaaaatcacc
GAACCAGTTCTTATCCGAAAAGGCTGAACAACTTCCAAACAAAAAAGCCC
TTATCGACGCTGAAACAGGACGATCNTTTATCTGAAAAGGCTGAACAACT
TCCAAACAAAAAAGCCCTTATCGACGCTGAAACAGGACGATCTTTAACTT
TCaacgaaattcaaaattttatcaacaaAATTGGTCGTGTTTTTAATAAG
TCTGGTTATAAACCAGGAGATAAAATTGCGCTATTCCTTGGAAATGAGTT
GGAGTACGTGCCCATATGGCTAGGATTGAACAAAGTTGGTATCAAAGTTG
GTTTGATTAATTATAACCTTCAAGGTAAAAGTTTGAATCACTGTTTAACT
CTTGTTGAATACAAAGCTGTTATTTGCGCTCCAGAACTGATGACGGCTAT
TAAAAACATTGATTTCCACGAAAACTCTGGTGtcgagatttttatttttg
gtgatGACTCTTATGAAGGAGATTACAAGGATCTGAAAGAACTGATCAAA
GAGCAGAAAGATTCGGCTGCAATTGAGGGCTTGGATATGAAAGCTAACGA
TGTTTGCCTTCTAATGTACACCTCTGGTAGTACTGGATTCCCAAAAGCAG
CCAAAGTTAAATGCGGAAAATTCGTCAAAGTTTGTGTTTCAAATGAGTTT
GTTATGACAAGTCCAGACGACATTGTTTATAATAGTTTACCTTTATATCA
CGGTACTGGAGGAGCTTTGGCTATGAGTCCTCTCTTGTATAAAGGATGTA
CCACTGTCATTCGAAAGAAGTTTAGTGCCTCCAAATTTATTCTTGAATGT
ATCAAGTATGATGTGACATGGGTTGGCTATGTCGGGGAATTATGGAAATA
TTTGTTGTCGCAACCAGTAAGAGATACAGATCGTCAACATAAGATTCGAA
TGATCCTTGGTAATGGGCTGAGAAAGAACATGGCGCCTTTGGTGAAAGAA
AGGTTTGGTATCAATAAGATTGCTGAGTTGTACGGAGCTACTGAGGGGAA
CTCCGTCCTCTTAAACGTCGATAACGTCCCTGGAGCTGTTGGATTCTACT
ATTTTTTGTTTCCGTTTTTGAATCAGAATTGTTTGGTTAAAGCAGATGTT
GAAACTGGTGAGATTGTCAGGGATGAGAATGGTCGAGCTATCCTTTGCAA
ACCTGGTGAAGTTGGTGCATTGATTGCTGTTATCAACAAAATTCTCTCAT
ATGATGGTTATGTAAATAATTCTAGCGAGACCAATAAAAAGATAGCTTAC
AATGTCTTTAAGGAAGGAGATTCTGCTTTTAAATCTGGTGATCTGTTGGT
CATGGATGAGTATCGTAATATCTATTTTGCAGACCGGATTGGCGATACCT
TCCGTTGGAGAGGTGAGAATGTTGCCACAACTGAAGTGGAAAATATCATG
TCATCTGTAATCAGCACTGCTGAAGATGTGGTCGTTTATCCAGTACCTAT
ACCAGGAGAAGGAGGGAATGCTGGCATGGCTTACATTCGAGAAAAAGAAA
ACCAACAATTTTCAATCAAAGGTGTCGCTCAAAGTCTGTTGGAAGAATTG
CCAAAATATGCAATTCCAATGTTCATTCGTATTGGCCGAAGTCTTGATCA
AACTGGTACCTTCAAATATCAAAAGAGCGCcttgaagaaagaaaaatatg
atttaaAGAGCTGCAATAAAGATGATGTTATTTATGTCTATGACGTCACC
aagaaagattacgtaattcttGATGCAGAACTTCAAGAGTATATTGAAAA
TGGAAACATGAGATTTTGAAGAATACTGAAAAGTTACATTGATAATtaca
cccgggggggggtacttaggcaaatggagggtacggtatgtgccgccctt
aagggtaccttttttggacttccaaagtcccgctaagggtcggaaaaatc
agaaaatcaaatttcagtcccagtaagggtcggaaaaataggaaaatttc
AACTTTTTACCCCCTGAAAGATCAAAATTTGGTCcaaattggtcaaatta
gtcccgctaagggtcgtaaaattcccaaaattttcctttgttttctactt
tttagtcccggtaagggtccaaagttcgaaagtcgggcggcacccacccg
tcagctcgcaaccctagtacccccccccgggtaatTACACATATCAAAGA
TAATTCGAACAAACAGtttaggaaaatatttttagcttttgaatttttat
atacACCATTTATCATTTACTAGTGAATTTTAGTGTAATTTATATACACA
Aaacatacagggtgtccctaataaaagtatcgagtttgaacatgcgattg
agtagaaagttttaagtgtgtattcacaaaattgtattttaagctctccc
tcttttttctttgtcattacgattaatttatacgttgtacctaccttttg
taatgaacctatgtgatggagaacgttcttatattttagcgataacacac
acaaacttttttactcaatcgcatgttcaaactcgatacttttatcaggg
acaccctgtacacaACTATGGCAATTAAATTAAGTGTTCCTAGGATTGTC
TATGAAATTAATTGTGTGTCACACTTGAGAGTTATTTTGCTTTTTCGAAA
AAAGCAGCTTATTAAAGCAAGCTTTTCTAAGATCTCGCACAATAGATGAC
AATTTTTAACCAAGGGCTTGCAGTGTGGTACGACTCGGAAAATCtcacat
tttgaaaatgttttttttaaccCATATTTGAAGTCATCCAATACATATCC
TCTAAGAATAGCTGACCATTGATAAacaatttattaaaatttgatgGTCT
TTCTAAATATCGCTATCAAGGCCTAGAGAAACTTTTAGTTCTGGAGCATC
TTCAAAAGGGTTTCTTGAGActtggaaaattgacttttcttAGATAGaga
ctaaattttttttaaggacataccaaattttgatcaattGGTCCTGGCAT
TTCATCATGAATCATATTTTATGAAATACTTTCACACGCTAAGATTTNTG
GTCGATTTTCACTCGACgtttgtccaaattttggaaaatcacgacccttt
gagagaggaaattttgaattacGTGAATTTTGGACCCTTACTGAGAccca
attttctttttaatggtttttgtttaGAGACTTTCGAaagtgtgaaaaag
ggacccttacgGCTCGCACacacccggcacccattttgttTAAGTATCCC
CCCCTATTGGGCCATTAGTTAGatcaaaaagtggtgcaaaTGACCTATTA
CTAAATTACCTAAGGTTTATACCTGATGAGATCTTTTTGAATGAGAACCA
AACACTTATTTTTACACATTCTTTAGTATCTTTTCACTTATTGATTTAAA
ACTTACACCCCTGTCTAAGTGACCCAGGGAAATCGTAAAGTCCACAGGAa
tcatataaaaaaattcatgaataTGTCTgcttgaccaattttgaccaatg
ggaTTTTTGACTGGCCAAAGGCCGTAGATTTACAATTTGGATTGAGGTAG
AGAACTTAAGTTAATTTTTATCGGATTTACTCATTATCCCAGCGGGAATT
AAAGTAATGCCGTTTTTGCCGATTTTTCCCACGGGTTCTATCGATGTGGA
TCTGACCAGGTCACTGATGGAGGGGTGTAACATTCGttgaatataaaaaa
gaatCGGCAGTAATTTTTCCATTATGTTATCTCCCTGAAAATGCTTTCTT
GAATCCCTATTTAAGAAATGTTATTAATGTATTTATTGTACATTTGCTCA
TATTTCTAGATCTGTAAAATAGAGATTGaagatcaaaataaacaaaatgg
ctCCGTGCAATCCATGGAAAGTATTTGGCTATGTATCTTTACTTTATTNC
TCCTATAGTCATTTTCATAATCATATATACATTATCTACAATATTCATTT
TATtgcatttaaaatattttatcctTTGATTTTAATCACTTCCTCAAAAC
TGGGGTCCGTTATAAATCTTTATGATTCTCAAACTGTGAGACTTTGCAcg
ttttatcattttgttattTTCGTCAGAAAAGAAATATATAAACCTCATGA
AATTTGGTTCACTACCATTAGTcctggggggggggcgtacTAGGTTTGTG
CGGTGATGGGTAtttccgagccaaaaatcgaaaattgacccttagagaga
cttttctcaaaatctttatCGATTTTCACTCGATCTGAGATTTTCGACCC
TTTGTGcgaggaaattttgaatttcgtgatttttggacccttacagaTCG
AggctcaattttctttttaatggtttttgtttaGAAACTTTCGAaagtgt
gaaaaagggacccttacgGCTCGCACACCCGGCACAAGTATCCCCCCTGG
GCCATTAgttaaatcaaaaagtggttCAAATGACCTATTACTAAATTACC
TAAGGTTTATACCTGCTGAGAACTTTTTGAATGAGAACCAAACACTTATT
TTTACACATTCTTTAGTATCTTTTCACTTATTGATTTAAAACTTACACCC
CTGTCTAAGTGACACAGGGAAATCGTAAAGTCCACAGGGatcatataaaa
aaattcatgaataTGTCTgcttgaccaattttgaccaatgggaTTTTTGA
CTGGCCAAAGGCCGTAGATTTACAATTTGGATTGAGGTAGAGAACTTAAG
TTAATTTTTATCGGATTTACTCATTATCCCAGCGGAAATTAAAGTAAAGC
CGTTTTTGCCGATTTTTCCCACGGGTTCTATCGATGTGGATCTGACCAGG
TCACTGATGGAGGGGTGTAACATTCGTTGAATATCAAAAAGAATCGGTAG
TAATTTTTCCATTATGTTATCTTCCTGAAAATGCTTTCTTGAATCCCTAT
TTAAGAAATGTTATTAATGTATTTATTGTACATTTGCTCATATTTTTAGA
TCTGTAAAATAGAGATTGaagatcaaaataaacaaaatggctCCGTGCAA
TCCATGGAAAGTATTTGGCTATGTATCTTTACTTTATTACTTCTATTCAA
TATTTGGAATCCAGATGTCATTTTTATTGGTGGGCAGCCTGAAAGATTTA
ACTTTTGCGAAACGAATTATCATCAGAGATTGTTATTGGGCTTTTATCAC
TATGACCAGATTTGTAcccaaattgatgaaaaacaaaaagaaatcccCGA
ACCAGCTATTTTCTGAAGTaactcaaaaacacccaaaCAAGAAAGCTCTT
ATCGACGCTGAAACAGGACGATCTCTAAGTTtcaatgaaattcaaatttt
tgttaaCAAAATTGGTCGTGTTTTTAATAACTCTGGCTATAAACCAGGAG
ATAAGATTGCTTTATTCCTTGGCAATGAATTGGAATATGTTCCCATATGG
TTAGGATTAAACAAAGTTGGAATCCAAGTCGGTAAGATTAATTATAACCT
CCACGGCAAGAGCTTAGAACATTGTTTAAGTATTGTCGATTACAGAGCTG
TCATTTGCGCTCCTGACTTTGTTAAAACTTTAGAGAACATCAGCTTTCAT
GAAAAATCTGTTGTcgagattttcatttttggtgaaGAGTCTTTTGAAGG
AGGTTATAAAGATCTGAATGGACTTATCAAAGACGAGCAGGATTCGACCG
CTGTCGAGGGATTGGACATGAAACCTAACGATTTCAGCATATTACAGTAC
ACCTCTGGTAGTACTGGATTCCCAAAAGCAGTCGCTGGTAAAAGTGGCAA
GTTTGTCAAGTTTTGCGTATTTCATGAAATAATGATGACCAAATCTGATG
ACATTGTATATAATTGCTTGCCTTTATATCAcaccagagatttgggaaaa
gaggataagaattgcGCTATTCAGCTATAGAAATATAGGCTAGGgagcct
tttgttctattgaaatATCTGCGCCCGATCNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNTCAGGGATGAGAATGGTCGTGCTATCCTTTGCAAACCT
GGTGAAGTTGGTGCATTGATTGGTATAGTCAAGAAAGGAGCTGAATATAA
TGGTTATGTCAATAATGAAAAGGAAACcaacaaaaagttgaaaagcaATC
TGTTCAAGGAAGGTGACTCTGCATTTATCTCTGGCGACCTCTTGGTTATG
GATGAATATCGCAATGTGTTTTTCGTTGACCGGATTGGCGATACCTTCCG
TTGGAGAGGTGAGAATGTTGCCACAACTGAAGTTGAAAATATCATGTCAT
CTGTAGTCAGCACTGCTGAAGATGTGGTCGTTTATCCAGTACCTATACCA
GGAGAAGGGGGAAATGCTGGCATGGCTTACATTCGAGAAAAAGGAAACCA
ACAGTTTTCAATCAAAGGTGTATCGCTCAAAGTCTGTTAAAAGAATTACC
AAAATATGCCATTCCAATGTTTATCCGTGTCGGTCGAAATCTTGATCAAA
CTGGTACCTTCAAATATCAAAAGAGCGcattgaagaaagaaaaatatgat
ttgAAGAGCTGCAATAAAGATGATGTCATTTATGTCTATGACGTCACCaa
taaagattacgtcattctCGATGCAGAATTACAACAGAACATCGAAGATG
GAAACATGAGATTCTAATTGACATCATTTGAGCTTACTATTTTTTACAAA
GCAATTTTTTGTAGGGACAAATACAATAAGGCTTTTTTACAGATCAACAT
TTTCATCTGTTGCTACTTTCATTCGTTCATTCgtcttttattgttttttt
tgtttgttcgtTCATTCCttgatttgtttatttgtttttttattcgtTCA
TTTGTTTATCTGTTCATTTGTTTGTTCATTCCTCCATTTGTTTATTTGCT
CATTCCTCCattcgttcattcattcatccattCGTTCATTCATCAACTCA
TTCATTCAACCATCTGTCTATTTATCCACTCAGTTTATTCGTTCATTCAT
TCGTTTTTTCGTTTATTTGTTTATTCGTTCATTTATTCATTCGCTCATTC
GCATATACTTACTGTTTTCCATCCATTTATTCATCCCTTCATTTAATATA
ACAAATattgaatttatatttttcatttggaAAACCTTTttagatttcat
ttttcttgatatttcaGTAATATTTCAGGTTTAGGTAAATTATGAACAAC
TAGGAGTATCAATTTTACGCTGTAAGAATATCTATATTTCTTGCAGCCAC
AGTAGAGTAGTAGTTATCAGTCTTGACGGTCGTTTAGAAGGTCGgtgttc
gattcccactcagtGTTGTGATTCagttggcaagtgaatgtacctttgCC
CGGGCCAAGCCATGCCATGTGATGGGAATTGGGTAGACAGAAACTGGgaa
aaataagagatttccaatcctggaaatatcatgaaatatgatatttccta
aactttggaaatatagaaaagtcaaatttttatatttacgaa

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_041566	XLOC_041566	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00066438-exon-scaffold_455-1491911889:429177..430655	TCONS_00066438-exon-scaffold_455-1491911889:429177..430655	Clytia hemisphaerica	exon
TCONS_00066438-exon-scaffold_455-1510915933:429177..430655	TCONS_00066438-exon-scaffold_455-1510915933:429177..430655	Clytia hemisphaerica	exon
TCONS_00066438-exon-scaffold_455-1575043694:429177..430655	TCONS_00066438-exon-scaffold_455-1575043694:429177..430655	Clytia hemisphaerica	exon
TCONS_00066438-exon-scaffold_455-1491911889:444889..446218	TCONS_00066438-exon-scaffold_455-1491911889:444889..446218	Clytia hemisphaerica	exon
TCONS_00066438-exon-scaffold_455-1510915933:444889..446218	TCONS_00066438-exon-scaffold_455-1510915933:444889..446218	Clytia hemisphaerica	exon
TCONS_00066438-exon-scaffold_455-1575043694:444889..446218	TCONS_00066438-exon-scaffold_455-1575043694:444889..446218	Clytia hemisphaerica	exon

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_455	supercontig	scaffold_455:429177..446218 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
5.30308	4.61921	8.41542	8.69051	0.142265	0.344267	0.714234	0.512474	0.6623	0.92341	1.81667	0.807851	4.16993	4.43797	7.61054	9.02526	3.44871	4.23019	2.92167	2.58294	0.598781	0.53093	3.8577	4.02422	0.879501	0.461036	0	0.208046	2.90036	2.78042

Blast

[Close]

BLAST of TCONS_00066438 vs. Swiss-Prot (Human)
Match: S27A1 (Long-chain fatty acid transport protein 1 OS=Homo sapiens GN=SLC27A1 PE=2 SV=1)

HSP 1 Score: 380.948 bits (977), Expect = 5.477e-119
Identity = 203/480 (42.29%), Postives = 290/480 (60.42%), Query Frame = 3

Query:  279 QMVSETVQRHPSKKALIDAETGRSLTFNDIQVFINKIANLFKSSGYKPGDKVALLIDNELEYVPLWLGLNKVGIQVGLINYNLHGKSLEHCLTVVDFKGIICSSSLEEILKDI-GFLNKPEYEIFIFDDGKTSIDSSSQNLQSLMENASIEAPEEYLF--GLRETCILMYTSGSTGRPKAAKMTKDKIMRFFILFPLLSNLQSDDIAYNTLPLYHGSGGLVFASQWCFIGCTTIIRKKFSASRFFTDCIKYDVSYVGYIGELWKYLLSQPVRDTDRQHKVQKALGNGLRSSMVPQVKERFGIDKIFEFYGATEGNCGLVNIDNVSGSVGFYFILFPFFNTSCLVKADVETGEIIRNENGRAILCKPGEVGTLIGVINNK---ANFDGYVNNEKETNKKLRRNLFKEGDSAFISGDLLVMDEYRNVFFVDRIGDTFRWRGENVATTEVENIMSSVVSTAEDVVVYPVPIPGEGGNAGMAYI 1700
            ++    VQR P + AL+DA TG   TF  +  + N +ANLF+  G+ PGD VA+ ++   E+V LWLGL K G++  L+N NL  + L  CL     K +I    +   + ++ G L K   +    D G   I   +  L  L++ AS  AP   +   G+ +    +YTSG+TG PKAA +   +  R          +Q+ D+ Y+ LPLYH +G ++   Q    G T ++RKKFSASRF+ DCIKY+ + V YIGE+ +YLL QPVR+ +R+H+V+ A+GNGLR ++  +  ERFG+ +I EFYGATE NC + N+D   GS GF   + P      LVK + +T E++R+  G  I C+ GE G L+G IN +     FDGYV +E  T+KK+  ++F +GDSA++SGD+LVMDE   ++F DR GDTFRWRGENV+TTEVE ++S ++    DV VY V +PG  G AGMA +
Sbjct:   80 RIFQAVVQRQPERLALVDAGTGECWTFAQLDAYSNAVANLFRQLGFAPGDVVAIFLEGRPEFVGLWLGLAKAGMEAALLNVNLRREPLAFCLGTSGAKALIFGGEMVAAVAEVSGHLGKSLIKFCSGDLGPEGILPDTHLLDPLLKEAST-APLAQIPSKGMDDRLFYIYTSGTTGLPKAAIVVHSRYYRMAAFGHHAYRMQAADVLYDCLPLYHSAGNIIGVGQCLIYGLTVVLRKKFSASRFWDDCIKYNCTVVQYIGEICRYLLKQPVREAERRHRVRLAVGNGLRPAIWEEFTERFGVRQIGEFYGATECNCSIANMDGKVGSCGFNSRILPHVYPIRLVKVNEDTMELLRDAQGLCIPCQAGEPGLLVGQINQQDPLRRFDGYV-SESATSKKIAHSVFSKGDSAYLSGDVLVMDELGYMYFRDRSGDTFRWRGENVSTTEVEGVLSRLLGQT-DVAVYGVAVPGVEGKAGMAAV 556

The following BLAST results are available for this feature:

BLAST of TCONS_00066438 vs. Swiss-Prot (Human)

BLAST of TCONS_00066438 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
S27A1	5.477e-119	42.29	Long-chain fatty acid transport protein 1 OS=Homo ...	[more]

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TCONS_00066438 (transcript) - C. hemisphaerica