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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00066435 ID=TCONS_00066435|Name=TCONS_00066435|organism=Clytia hemisphaerica|type=transcript|length=2505bp
TGCAGTTTATGTGTCTCTGTGTCTAATTACTCAAGTTTTGTCTCAAACTG
TTCATTATTCAATTTTAGTGAAGATAAAACGAAATCAATTATGGAACCAA
AAACGGATTATTGTAATCCCTGGAAAGTATTTGGCTACATGTCATTACTT
TATTTCTTCTATTCAATATTTGGAATCTTGTTGTCGTTTTTATTGGTGGG
CAGTCTTGTTTATTTCACTGATGGTTTGAAAGATTTGGCTTTCGCTAAAC
GAATTATCATCAGAGACTGTTTTTGGTTCTGGAAGTTTGCTACCGTGTTT
ATACCCAAGACGATCAAGAACATCAAGAAGACACCAAACCAGATGGTTTC
TGAGACAGTCCAACGACACCCAAGCAAGAAAGCCCTTATAGATGCCGAGA
CTGGACGATCTTTAACTTTCAACGATATCCAAGTCTTCATCAATAAGATT
GCTAATCTTTTTAAAAGCTCTGGATATAAACCTGGAGATAAGGTCGCCCT
ACTGATCGATAATGAGTTAGAATATGTTCCCTTATGGTTAGGATTGAACA
AAGTTGGTATCCAAGTTGGTTTAATCAACTATAACCTTCATGGCAAGAGT
TTGGAACATTGTTTAACTGTGGTTGACTTTAAAGGTATTATCTGTAGTTC
CTCTTTAGAAGAGATTCTAAAGGACATTGGATTTCTTAACAAACCAGAAT
ATGAGATATTCATTTTTGATGATGGTAAGACCTCGATAGATTCTTCTAGC
CAAAATCTACAATCCTTAATGGAAAATGCGTCGATTGAAGCCCCGGAGGA
ATATTTGTTCGGACTTAGAGAAACTTGTATTCTTATGTATACATCTGGTA
GCACTGGACGGCCAAAAGCAGCAAAAATGACGAAGGATAAAATCATGCGT
TTTTTCATCTTGTTTCCCTTGCTATCAAACCTTCAATCTGATGATATTGC
ATACAATACCTTACCACTTTATCATGGTAGTGGTGGCTTGGTGTTTGCGT
CGCAATGGTGTTTTATTGGTTGTACCACAATTATCAGGAAGAAGTTCAGC
GCTTCTCGATTCTTTACTGATTGCATCAAATATGATGTCAGTTACGTTGG
TTATATCGGTGAACTGTGGAAATATCTTCTTTCACAACCAGTAAGAGATA
CTGATAGGCAACACAAGGTTCAAAAGGCTCTCGGAAATGGACTACGATCT
AGCATGGTTCCACAGGTCAAAGAAAGGTTCGGGATTgataagatttttga
attttacggCGCAACTGAGGGCAATTGTGGACTGGTAAATATTGATAATG
TTTCTGGATCTGttggtttctatttcatttTGTTTCCCTTTTTTAACACT
TCGTGTTTGGTGAAAGCGGACGTCGAAACTGGCGAGATTATCAGAAATGA
GAATGGTCGTGCTATCCTTTGCAAACCTGGTGAAGTTGGGACCTTGATTG
GTGTTATCAACAACAAGGCTAATTTTGATGGATATGTCAATAATGAAAAG
GAAACCAACAAAAAGTTGAGAAGAAATCTGTTCAAGGAAGGTGACTCTGC
ATTTATCTCTGGCGACCTCTTGGTGATGGATGAATATCGTAATGTGTTTT
TCGTTGACCGGATTGGCGATACCTTCCGTTGGAGAGGTGAGAATGTTGCC
ACAACTGAAGTTGAAAATATCATGTCATCTGTAGTCGGCACTGCTGAAGA
TGTGGTCGTTTATCCAGTACCTATACCAGGTGAAGGAGGGAATGCTGGCA
TGGCTTACATTCGAGAAAAAGAAGACCAGCAGTTTTCAATCAAAGGTGTC
GCTCAAAGTCTGTTGGAAGAATTACCAAAATATGCTATTCCAATGTTCAT
TCGTATTGGTCGAAATCTTGATCAAACTGGTACCTTCAAATATCAAAAGA
GCGCcttgaagaaagaaaaatatgatctgaAGAGCTGCAATAAAGATGAT
GTCATTTATGTCTATGACGTCACAAAGAAAGACTACGTCATTCTTGATGC
AGAACTtcaagagaaaattgaaaaaagtcaaatgagATTCTAAAAGTATT
CAGCTTTCACACATCTCAAACTATAGGTTGTTAATTTCACTCATTTTATT
GTGGCGTTTATACTCAATTGAAACACTTTGCCTCTATTGTAAATATCTAT
GACCATGTTGAGACGTTACAGctccgttccgttccgttccgttccgaaac
gaaacggatCTGAAACAAGCGTGAACATCAAAATTCGAACCGTCAAGAAT
AAAGGCgttacaaaacaaaacagatcgaaacagtttcactccactttttt
catcggaacggaactgctccgttttcttgttCCGAAACGTTCCAAAACCA
ATATGAGCACACTCGATTCGTAACGAAaatacagtgccgtaggaagcatt
ttcatattgggagggctgaagtttagtgacaccgcgagggccaaccatgg
tttggcccgagggggaaaattttgaaaatttgagctctagattgcttaaa
aatac Run BLAST on NCBI transcript from alignment at scaffold_455:429116..431620+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00066435 ID=TCONS_00066435|Name=TCONS_00066435|organism=Clytia hemisphaerica|type=transcript|length=2505bp|location=Sequence derived from alignment at scaffold_455:429116..431620+ (Clytia hemisphaerica)
TGCAGTTTATGTGTCTCTGTGTCTAATTACTCAAGTTTTGTCTCAAACTG
TTCATTATTCAATTTTAGTGAAGATAAAACGAAATCAATTATGGAACCAA
AAACGGATTATTGTAATCCCTGGAAAGTATTTGGCTACATGTCATTACTT
TATTTCTTCTATTCAATATTTGGAATCTTGTTGTCGTTTTTATTGGTGGG
CAGTCTTGTTTATTTCACTGATGGTTTGAAAGATTTGGCTTTCGCTAAAC
GAATTATCATCAGAGACTGTTTTTGGTTCTGGAAGTTTGCTACCGTGTTT
ATACCCAAGACGATCAAGAACATCAAGAAGACACCAAACCAGATGGTTTC
TGAGACAGTCCAACGACACCCAAGCAAGAAAGCCCTTATAGATGCCGAGA
CTGGACGATCTTTAACTTTCAACGATATCCAAGTCTTCATCAATAAGATT
GCTAATCTTTTTAAAAGCTCTGGATATAAACCTGGAGATAAGGTCGCCCT
ACTGATCGATAATGAGTTAGAATATGTTCCCTTATGGTTAGGATTGAACA
AAGTTGGTATCCAAGTTGGTTTAATCAACTATAACCTTCATGGCAAGAGT
TTGGAACATTGTTTAACTGTGGTTGACTTTAAAGGTATTATCTGTAGTTC
CTCTTTAGAAGAGATTCTAAAGGACATTGGATTTCTTAACAAACCAGAAT
ATGAGATATTCATTTTTGATGATGGTAAGACCTCGATAGATTCTTCTAGC
CAAAATCTACAATCCTTAATGGAAAATGCGTCGATTGAAGCCCCGGAGGA
ATATTTGTTCGGACTTAGAGAAACTTGTATTCTTATGTATACATCTGGTA
GCACTGGACGGCCAAAAGCAGCAAAAATGACGAAGGATAAAATCATGCGT
TTTTTCATCTTGTTTCCCTTGCTATCAAACCTTCAATCTGATGATATTGC
ATACAATACCTTACCACTTTATCATGGTAGTGGTGGCTTGGTGTTTGCGT
CGCAATGGTGTTTTATTGGTTGTACCACAATTATCAGGAAGAAGTTCAGC
GCTTCTCGATTCTTTACTGATTGCATCAAATATGATGTCAGTTACGTTGG
TTATATCGGTGAACTGTGGAAATATCTTCTTTCACAACCAGTAAGAGATA
CTGATAGGCAACACAAGGTTCAAAAGGCTCTCGGAAATGGACTACGATCT
AGCATGGTTCCACAGGTCAAAGAAAGGTTCGGGATTgataagatttttga
attttacggCGCAACTGAGGGCAATTGTGGACTGGTAAATATTGATAATG
TTTCTGGATCTGttggtttctatttcatttTGTTTCCCTTTTTTAACACT
TCGTGTTTGGTGAAAGCGGACGTCGAAACTGGCGAGATTATCAGAAATGA
GAATGGTCGTGCTATCCTTTGCAAACCTGGTGAAGTTGGGACCTTGATTG
GTGTTATCAACAACAAGGCTAATTTTGATGGATATGTCAATAATGAAAAG
GAAACCAACAAAAAGTTGAGAAGAAATCTGTTCAAGGAAGGTGACTCTGC
ATTTATCTCTGGCGACCTCTTGGTGATGGATGAATATCGTAATGTGTTTT
TCGTTGACCGGATTGGCGATACCTTCCGTTGGAGAGGTGAGAATGTTGCC
ACAACTGAAGTTGAAAATATCATGTCATCTGTAGTCGGCACTGCTGAAGA
TGTGGTCGTTTATCCAGTACCTATACCAGGTGAAGGAGGGAATGCTGGCA
TGGCTTACATTCGAGAAAAAGAAGACCAGCAGTTTTCAATCAAAGGTGTC
GCTCAAAGTCTGTTGGAAGAATTACCAAAATATGCTATTCCAATGTTCAT
TCGTATTGGTCGAAATCTTGATCAAACTGGTACCTTCAAATATCAAAAGA
GCGCcttgaagaaagaaaaatatgatctgaAGAGCTGCAATAAAGATGAT
GTCATTTATGTCTATGACGTCACAAAGAAAGACTACGTCATTCTTGATGC
AGAACTtcaagagaaaattgaaaaaagtcaaatgagATTCTAAAAGTATT
CAGCTTTCACACATCTCAAACTATAGGTTGTTAATTTCACTCATTTTATT
GTGGCGTTTATACTCAATTGAAACACTTTGCCTCTATTGTAAATATCTAT
GACCATGTTGAGACGTTACAGctccgttccgttccgttccgttccgaaac
gaaacggatCTGAAACAAGCGTGAACATCAAAATTCGAACCGTCAAGAAT
AAAGGCgttacaaaacaaaacagatcgaaacagtttcactccactttttt
catcggaacggaactgctccgttttcttgttCCGAAACGTTCCAAAACCA
ATATGAGCACACTCGATTCGTAACGAAaatacagtgccgtaggaagcatt
ttcatattgggagggctgaagtttagtgacaccgcgagggccaaccatgg
tttggcccgagggggaaaattttgaaaatttgagctctagattgcttaaa
aatac
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00066435-exon-scaffold_455-1491911889:429116..431620 | TCONS_00066435-exon-scaffold_455-1491911889:429116..431620 | Clytia hemisphaerica | exon |
| TCONS_00066435-exon-scaffold_455-1510915933:429116..431620 | TCONS_00066435-exon-scaffold_455-1510915933:429116..431620 | Clytia hemisphaerica | exon |
| TCONS_00066435-exon-scaffold_455-1575043694:429116..431620 | TCONS_00066435-exon-scaffold_455-1575043694:429116..431620 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_455 | supercontig | scaffold_455:429116..431620 + |
Blast
BLAST of TCONS_00066435 vs. Swiss-Prot (Human)
Match: S27A4 (Long-chain fatty acid transport protein 4 OS=Homo sapiens GN=SLC27A4 PE=1 SV=1) HSP 1 Score: 420.239 bits (1079), Expect = 4.274e-135 Identity = 230/570 (40.35%), Postives = 338/570 (59.30%), Query Frame = 1
Query: 343 MVSETVQRHPSKKALIDAETGRSLTFNDIQVFINKIANLFKSSGYKPGDKVALLIDNELEYVPLWLGLNKVGIQVGLINYNLHGKSLEHCLTVVDFKGIICSSSLEEILKDIGFLNKPEYEIFIFDDGKT-SIDSSSQNLQSLMENASIEAPEEYLFGLRETCILMYTSGSTGRPKAAKMTKDKIMRFFILFPLLSNLQSDDIAYNTLPLYHGSGGLVFASQWCFIGCTTIIRKKFSASRFFTDCIKYDVSYVGYIGELWKYLLSQPVRDTDRQHKVQKALGNGLRSSMVPQVKERFGIDKIFEFYGATEGNCGLVNIDNVSGSVGFYFILFPFFNTSCLVKADVETGEIIRNENGRAILCKPGEVGTLIGVINNK---ANFDGYVNNEKETNKKLRRNLFKEGDSAFISGDLLVMDEYRNVFFVDRIGDTFRWRGENVATTEVENIMSSVVGTAEDVVVYPVPIPGEGGNAGMAYIREKEDQQFSIKGVAQSLLEELPKYAIPMFIRIGRNLDQTGTFKYQKSALKKEKYDLKSCNKDDVIYVYDVTKKDYVILDAELQEKIEKSQMRF 2040
+ + TV+RHP K ALI T TF + + + +AN ++ G GD A+ ++N E+V LWLG+ K+G++ LIN NL +L HCLT + ++ S + + ++ P +F + ++ S+++L L+++A P G + +YTSG+TG PKAA + + R L ++ +DI Y+ LPLYH +G +V Q G T +IRKKFSASRF+ DCIKY+ + V YIGEL +YLL+QP R+ + QH+V+ ALGNGLR S+ RF I ++ EFYGATE NC L N D+ G+ GF + F LV+ + +T E+IR +G I C+PGE G L+G I K FDGY+ N+ NKK+ +++FK+GD A+++GD+LVMDE ++F DR GDTFRW+GENV+TTEVE +S ++ A DV VY V +PG G AGMA + ++ AQ L +ELP YA P+F+R+ L +TGT+K+QK+ L+KE +D + KD + Y+ D K YV LD E +I+ + +
Sbjct: 79 LFASTVRRHPDKTALIFEGTDTHWTFRQLDEYSSSVANFLQARGLASGDVAAIFMENRNEFVGLWLGMAKLGVEAALINTNLRRDALLHCLTTSRARALVFGSEMASAICEVHASLDPSLSLFCSGSWEPGAVPPSTEHLDPLLKDAPKHLPSCPDKGFTDKLFYIYTSGTTGLPKAAIVVHSRYYRMAALVYYGFRMRPNDIVYDCLPLYHSAGNIVGIGQCLLHGMTVVIRKKFSASRFWDDCIKYNCTIVQYIGELCRYLLNQPPREAENQHQVRMALGNGLRQSIWTNFSSRFHIPQVAEFYGATECNCSLGNFDSQVGACGFNSRILSFVYPIRLVRVNEDTMELIRGPDGVCIPCQPGEPGQLVGRIIQKDPLRRFDGYL-NQGANNKKIAKDVFKKGDQAYLTGDVLVMDELGYLYFRDRTGDTFRWKGENVSTTEVEGTLSRLLDMA-DVAVYGVEVPGTEGRAGMAAV-ASPTGNCDLERFAQVLEKELPLYARPIFLRLLPELHKTGTYKFQKTELRKEGFD-PAIVKDPLFYL-DAQKGRYVPLDQEAYSRIQAGEEKL 643
The following BLAST results are available for this feature:
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