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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00066426 ID=TCONS_00066426|Name=TCONS_00066426|organism=Clytia hemisphaerica|type=transcript|length=4287bpRun BLAST on NCBI protein sequence of TCONS_00066426-protein >TCONS_00066426-protein ID=TCONS_00066426-protein|Name=TCONS_00066426-protein|organism=Clytia hemisphaerica|type=polypeptide|length=539bp MVMGSPNAEGSVQTVSTLALAEAAHREYQAGNYESAEKLCMQWWRRETDSRun BLAST on NCBI transcript from alignment at scaffold_455:338459..350974+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00066426 ID=TCONS_00066426|Name=TCONS_00066426|organism=Clytia hemisphaerica|type=transcript|length=12516bp|location=Sequence derived from alignment at scaffold_455:338459..350974+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_455:338459..350974+ >TCONS_00066426 ID=TCONS_00066426|Name=TCONS_00066426|organism=Clytia hemisphaerica|type=CDS|length=12960bp|location=Sequence derived from alignment at scaffold_455:338459..350974+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00066426 vs. Swiss-Prot (Human)
Match: OGT1 (UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110 kDa subunit OS=Homo sapiens GN=OGT PE=1 SV=3) HSP 1 Score: 919.842 bits (2376), Expect = 0.000e+0 Identity = 431/525 (82.10%), Postives = 483/525 (92.00%), Query Frame = 2
Query: 218 NAEGSVQTVSTLALAEAAHREYQAGNYESAEKLCMQWWRRETDSTGCLLLLSSIHFQCRRLDQSAQFSQLAIKQNPMLAEAFSNLGNVLKEKGQVKDALANYRHAVKLKPDFIDGYINLAAALVTAGDLEGAVQAYATALNYNPELYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVQIDQNFLDAYINLGNVLKEARIFDRAVTAYLRALTINPNHAIVHGNLACVYYEQGLIDLAVDTYKRAIELQPNFPDAYCNLANALKEQGKVEESEECYNTALTLCPSHADSLNNLANIKREQGKIEDSIGLYMKALQVFPEFAAAHSNLASILQQQGKLHEALMHYKDAIRIHPTFADAYSNMGNALKEMQDIQGAIQCYTRAIQINPGFADAHSNLASVYKDSGNIAEAIQSYRTALKLKPEFPDAYCNLAHCLQIICDWNDYDNRMKKLLTIVDDQLGKNRLPSVHPHHTMLYPLSPQQRKAIANRHGNLCLDKV 1792
+ E + + +S LAE AHREYQAG++E+AE+ CMQ WR+E D+TG LLLLSSIHFQCRRLD+SA FS LAIKQNP+LAEA+SNLGNV KE+GQ+++A+ +YRHA++LKPDFIDGYINLAAALV AGD+EGAVQAY +AL YNP+LYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAV +D NFLDAYINLGNVLKEARIFDRAV AYLRAL+++PNHA+VHGNLACVYYEQGLIDLA+DTY+RAIELQP+FPDAYCNLANALKE+G V E+E+CYNTAL LCP+HADSLNNLANIKREQG IE+++ LY KAL+VFPEFAAAHSNLAS+LQQQGKL EALMHYK+AIRI PTFADAYSNMGN LKEMQD+QGA+QCYTRAIQINP FADAHSNLAS++KDSGNI EAI SYRTALKLKP+FPDAYCNLAHCLQI+CDW DYD RMKKL++IV DQL KNRLPSVHPHH+MLYPLS RKAIA RHGNLCLDK+
Sbjct: 11 STEPTKRMLSFQGLAELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVSIVADQLEKNRLPSVHPHHSMLYPLSHGFRKAIAERHGNLCLDKI 535 HSP 2 Score: 405.216 bits (1040), Expect = 3.315e-120 Identity = 198/380 (52.11%), Postives = 246/380 (64.74%), Query Frame = 3
Query: 2568 I*VMWLGYPGTSGATYMDYIITDKETSPLKYTEHYSEKFAYMPHTFFVGDHKQMFPHLIKDVTQEKR---------------------------------------NVNTINSATNTTSVITTKGVEQYIEERIDQRK----------------EEVSGTKDSGERVPETLPQMSRASYGLPDDAFVFCNFNQLYKIDPQTFESWCNILTQVPNSVLWLLRFPQVGETNVKAQAVAHGVAEERIIFSNVAPKEEHVRRGQLGDVCLDTPLCNGHTTGMDVLWAGCPMVTLPLETLASRVAASQMHALGVSELVAKTRKDYEDIAIKLGTDKEYYRKIKLKVWDGRLLSPLFNTQQYTLDLEKKFYKMWQRYEGGQSPDHL 3542
I MWLGYPGTSGA +MDYIITD+ETSP + E YSEK AYMPHTFF+GDH MFPHL K + + N ++ N+A N VI + + + E I++ + +++ +GE VP T+ +R+ YGLP+DA V+CNFNQLYKIDP T + W NIL +VPNSVLWLLRFP VGE N++ A G+ + RIIFS VAPKEEHVRRGQL DVCLDTPLCNGHTTGMDVLWAG PMVT+P ETLASRVAASQ+ LG EL+AK R++YEDIA+KLGTD EY +K++ KVW R+ SPLFNT+QYT++LE+ + +MW+ Y G PDH+
Sbjct: 658 IQAMWLGYPGTSGALFMDYIITDQETSPAEVAEQYSEKLAYMPHTFFIGDHANMFPHLKKKAVIDFKSNGHIYDNRIVLNGIDLKAFLDSLPDVKIVKMKCPDGGDNADSSNTALNM-PVIPMNTIAEAVIEMINRGQIQITINGFSISNGLATTQINNKAATGEEVPRTIIVTTRSQYGLPEDAIVYCNFNQLYKIDPSTLQMWANILKRVPNSVLWLLRFPAVGEPNIQQYAQNMGLPQNRIIFSPVAPKEEHVRRGQLADVCLDTPLCNGHTTGMDVLWAGTPMVTMPGETLASRVAASQLTCLGCLELIAKNRQEYEDIAVKLGTDLEYLKKVRGKVWKQRISSPLFNTKQYTMELERLYLQMWEHYAAGNKPDHM 1036 The following BLAST results are available for this feature:
BLAST of TCONS_00066426 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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