TCONS_00066419 (transcript) - C. hemisphaerica

Overview
NameTCONS_00066419
Unique NameTCONS_00066419
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1989

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00066419 ID=TCONS_00066419|Name=TCONS_00066419|organism=Clytia hemisphaerica|type=transcript|length=1989bp
TATACTCCCAATCAAAAGTACAATCACTGCTAATTACAAAGGACTCTCCG
ATCGacaaagatttacaaaaattaaaagaagtAGCATCAGTTGACATCAA
CATCGAACAATTACTTGTGGTACCAGCCTATTCTGAAGTTGGCGATGACG
TCATAGCCTTGTTTTGCTTGTTCAACAAAATCGGTGCTAAAACTGGCTTC
ACCAAACTCGACGAAGAACTCATGCAGATGGTGGTGAAAAATTGTCGACA
TATTGTTTGTAATGCTTTAGATTGGAAATCACAACTTATTATACAACGTC
AAAACGAGagtTTGTTAGAAATTTCGAAAACCTTATTTAGCCATCTAGAC
GATGTGTCCATTTTACTGCACAAGATTATGGAGGAAGCACGCAACTTGAC
TAACGCTGAACGCTGTTCACTCTTTCTTGTCGATCACAATAGGGGAGAAT
TGATCGCTAAAGTTTTTGACGGCATCGAATCGGAGAATTCTTCAGAAATA
CGTATCCCAATAACGAACGGTATTGCTGGTTACGTTGCTACGACAGGCGA
AACTTTGAATATCAAGGATGCTTACTCACACCCTCTCTTTTATAAAGAAG
TCGACCAAAAAACTGGATTCAAAACTAGGCATATTTTATGTTTTCCTATT
CGCTCAGTATCTGAGCAAATTATCGGTGTAGCTCAACTATGTAACAAATT
AAATGGGAATTGTTTTACGAAATTCGACGAAGAACGGACACTAGGATTTG
CGATTTTTGTTGGTCTTTCGCTCGTACAGGTATGTAGTATGCTGGTGTTC
AAAGTTTTGTAAACTCTCTATACTGACTTCATTCTACTATAGTTTGAACC
CTCGGTACAGTTTTGAATTGTAGGGAGTGAGAAAATTATGACATCTTCCC
AAAAGCCATAGCCATCTTAATCTCTTACTTTATTGAAGCACATGGATTGT
GTAAAGGACATCATTTAAAGTATCAGGATATATCAGGAGATACCTTCATG
ATCATGTGCTTACACAAcatttcaaaacaatagaaacttttcCCCCTCCC
GAGCAGActagagtcgtttataatgcatgtaatacataGTATAGGTGTTT
AATGATGATACggttattgttacgggatttagtttgtataaaattgacta
aaatttgataaatccctccattactttttgctttatttctactgaaTTAG
TAGTCTACCTTGCTAGACTACCTTCCGAGACGTACGAgcacagtttttga
aaaattattttgtttaattctgctttgtcagcatagaggtGCGTGCCTCC
TTTCTATATCATAATAAAGAATATAACTTAAGGCTATACAATATTAAACG
AGTATGATTTAATTGTCACCTTTATCATTTACTTGTCCAGAGTTTGCTTT
ACAAGAAAGCAACCGATGCCAAACAACGAAGCAAACTCGCCAACGAACTT
ATGCTTTATCATATGATGGTCTCACAAGAAGAAATTGACAGTTATGTGAA
GGTTGCCATGCCAACGAAAGATTCTCTTCATCCGGATATGGATAAATTCA
GTTTCATGCCAAGAATCTCTTTTGCTGAAACTGACAGCATAAAGGTTGTT
TTGAGTATGTTCAATGATCTCAATGTCATCAAACGTTGGAAAGTTTCAGA
ATCAACATTAGTCAGATTTATATTAACAGTTCGAAGAGGGTATCGTGACG
TTCCATATCATAATTGGACGCATGCGTGGACTGTGGCTCATTTCTCATAC
ACTTTATTGAAGAAAACAAACGCGTTGGACTACTTAAGTGATTTAGAGGT
GTTTGTCCTTCTGGTCTCTTGTTTATGTCATGATATTGATCACAGAGGAA
CCAATAACTCTTTCCAAATATCATCGCAATCTGTGTTAGCTTCATTATAC
AGTTCAGCTGGTTCAGTGTTAGAACGTCACCATTTTGCACAAGCAATGTG
TATCGTTCAAACGGAACACAACAACGTCTTTGAAAGCCT
Run BLAST on NCBI

transcript from alignment at scaffold_455:311092..318766+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00066419 ID=TCONS_00066419|Name=TCONS_00066419|organism=Clytia hemisphaerica|type=transcript|length=7675bp|location=Sequence derived from alignment at scaffold_455:311092..318766+ (Clytia hemisphaerica)
TATACTCCCAATCAAAAGTACAATCACTGCTAATTACAAAGGTATcagat tttctttaattttctcccttcttttcaaacatgaaaaataacttaacttt aaaatttgaaacccATCAGTGTTTTTCATCGAAATTCCCTCTTCGTATTT CACGCCTTCCATGAAAAAGAGCTGTTTTCAGAATCAACCAATCGAACCCA CCTAAAAGGCAAGAATTTTTGGCAGAATAAAAATTTGGTGGTTTTGGCCA AAAtgcgccaaattaagttcccgctaaattaaatttcctcataatttttt tttgttcatccTCTCAATTTTACTCCCTTAAGGTATATCGATGTTTCGTT TATAaataagggttggaaaaatcagaaaatctcaGCCTCAGAAAATCTCA GGAAGAAAGGGGAGTaaatcaactttttgaaatctggtcaaattagtccc gataagggtcggaaaaaaacaaaaattttcctaatttgtgtttttttatt cacGCTAAAGGTAGGTTCGAAAGTCGGGTGGTTCGTACCCGTCAGCTCAG TACCCCTATTCCccctgtaaaaaaattcaaaccctGTAGAAGAAAGAATC CATTCAGCGCTACGAACATTGNAAAtgaggaaaataagaacatgttaaga acatttttaggcttgaaactgaacaagttaagaacatccgaaggcttcaa aaatcttatacgttctaataaaaaaacgtgtagtaatACATAGCAGGGAG TGAGAAATTACATCGACTACTCACTTATTTAAGAGCTGTTGCAGCTTTTG ATTTGTTTCACTTTCCCTTTTCTTTAGGCATTTGGTGACAAACTGCTTGG TAAAGAATATCGGATGGAGGTACGTGCTCGCCGCTTTCATAAAAACTAAA TatctctttttaaaatttcttatcaGCAGCCTTAGAAGATACCTTTTTTG CATTTGATAGTAAGACAGAGGGATCTCGCATAAATCTTTTTCTCTGCTAT GGAAATCTCGTTTTGGAAAATTGTACGAATTCTGCGTTTCAAATTTCCAT TAACATTTTTATTGATCCGATTTTTATCTACTCTCTCTTTCAGCTATGTA ATAgtggatttttatttttatactcCCAATCAAAAGTACAATCACTGCTA ATTACAAAGGTATcagattttctttaattttctcccttcttttcaaacat gaaaaataacttaactttaaaatttgaaacccATCAGTGTTTTTCATCGA AATTCCCTCTTCGTATTTCACGCCTTCCATGAAAAAGAGCTGTTTTCAGA ATCAACCAATCGAACCCACCTAAAAGGCAAGAATTTTTGGCAGAATAAAA ATTTGGTGGTTTTGGCCAAAATGCGCCAAACTAAGTTCCCGCTAAATTAA ATTtcctcataattttttttttttgttcatccTCTCAATTTTACTCCCTT AAGGTATATCGATGTTTCGTTTATAAAttagggttggaaaaatcagaaaa tctcaGCCTCAGAAAATCTCAGGAAGAAAGGGGAGTaaatcaactttttg aaatctggtcaaattagtcccgataagggtcggaaaaaaacaaaaatttt cctaatttgtgtttttttattcacGCTAAAGGTAGGTTCGAAAGTCGGGT GGTTCGTACCCGTCAGCTCAGTACCCCTATTCCccctgtaaaaaaattca aaccctGTAGAAGAAAGAATCCATTCAGCGCTACGAACATTGGGGTGTTC GTTCTATAATTATGAATCTCATTGATTTTTTTAACTCATACGTATTTCTT TTCAGGACTCTCCGATCGacaaagatttacaaaaattaaaagaagtAGCA TCAGTTGGTACGTTTCTTATTCACCAAGTACAGTTCTGAAATTCATAaac tatttatttttgaattgacTTTGCATCCCCTTTTTGTCGCCAAATTTCTT GACTtgaatttctatatttttttaaatgcctcAGAAAATAACGACAATAA AAAATCttaaagccagattgacattatgttttccgaggtctgaatcgctg cttCAAATACTCTGAGCTTGCATAAAGATTGCAGTTAaattcaaccaatc atcaaaacaaaagatagcGCATGACGTAGCTTATTGTTCGATTCAACACT TCGATGTCTTCACtttaatataacattttaataaCTAGAGAGTTTACAAT GTTTTGACTGCAAAGTTTCGATtaagaattggaatgaattgtcTGCGTTT TTAATGAATCTGTATAATGTTTTTGCAGAATAAGCAAACAGACTCATGAA TAGATATACTGGCTAGATTATCAGTCTCATCTTTTTATAAANACAGACTC ATGAATAGATATACTGGCTTTAAATTATCAGTCTCATCTTTTTATTACCC TTTTCCTAGACATCAACATCGAACAATTACTTGTGGTACCAGCCTATTCT GAAGTTGGCGATGACGTCATAGCCTTGTTTTGCTTGTTCAACAAAATCGG TGCTAAAACTGGGTGAGAATTTCCTTTTCCAATAAAGCTTTAGGGGATTG TATACGTTTATCGTGCGTTAGTATAATCCGTTCGCAATATTACGTCGAAG TTTCTTTGTAAGATAACTCTAGTGGTAAATACTTGAATGAATGCGCATAC ACGGAGGGGCGTATCTCCTTCGTAgttctttttgaaaatcctcAAACCAA ACTCAAAAGACGACAAAATACTTTctatggaaaaaaatattgatgtgTTG AATCTGGTATAGACAATAGGGTATTAGGGACCAAACGTGCCATCGTTCAA ATTATTTCTGCTATTCGAccaattttatatattttttactaTAGCTTCAC CAAACTCGACGAAGAACTCATGCAGATGGTGGTGAAAAATTGTCGACATA TTGTTTGTAATGCTTTAGATTGGAAATCACAACTTATTATACAACGTCAA AACGAGGTTGGTTCATGAATTCACTGTTAAGTGTTTTGAGTCTTATTACC AACCTGTTAGTTCAGAGTGTGTTGACGCCATTAACggttacaaaaattat ttttaaggaGGACAATTCTTAATAGATGATTTTCCTAACAATTGAGAAAT TACCAAGCAAATTGATTGGTTGCCAGAGCTGCATAAGAGACTAAGACTGG TCAAGTACATGACCTTTTTTGACAATAATATCAAGGatgtttagattttt tcctTGAAGTTTCAGTAAACAATTTctctttctgtttttttttttagagt TTGTTAGAAATTTCGAAAACCTTATTTAGCCATCTAGGTAAGTTAAATCT CTTAACCATAGAAATTCAAATATCCTCGCAAAtcctttttaattttcaag gaGGAGTTTTTAAGAACGTGGGTTATAAGTCATAACTCTATATCTTAAGT ATTCGATTTGTCTTCTGAGCGTTCTCAATACTCTATAGAATTCATGATCA AGTCTACAACATTTATTTTCAATTGATCATAAGTTActccaaaaatcttt ttgatcaTCGATCCTTACCATGGTGTGACATATACTAAGGGTATACTACA TTTTTCTAATCCACAGACGATGTGTCCATTTTACTGCACAAGATTATGGA GGAAGCACGCAACTTGACTAACGCTGAACGCTGTTCACTCTTTCTTGTCG ATCACAATAGGGGAGAATTGATCGCTAAAGTTTTTGACGGCATCGAATCG GAGGTAAAATATGTGTTAACCACTCTTGAGTAAAAGTCTAGTTGTAGCAT GTAGGTGCGTTCATCTTTGCACAATAGCTGTTACCTCACTGTATTTCAAG ATTATATccatccctgtctcaatgacccctgtgaaattttgaaatccacc gggatagttttgaaaaaagtataatTTCAGTAGGTTTAAAATTGAGATCT CACTGAGGTGAGCGAGATTTTCACCAGATCGAGAAGTTTTTCTCTTAAAG CATTTGCGGCTCTTTGTCCTAGAATTCTTTGGCAtgtatttttttcgatt ttgacgaCCGGAATAAGATcataaatttccaaattttgatcaGGTCAGAG AATTTCAATTGATTTTGCCGGGTTTACTCATTATCTCAGCGGGGCTTAAA ATAAGGCCATTTTAGCTATATTCTTCACCGGGTCATTTACTGAAGCAATT CTGACCGgttcactgatacaggggtgtatataTTTAGATATCTTATACAT TGAATTCCTTTTTCTGAAACTAATGAAttgtattttcacttttcagAATT CTTCAGAAATACGTATCCCAATAACGAACGGTATTGCTGGTTACGTTGCT ACGACAGGTACTTAAAATTATTTATTGTAAAACTTTCCGTAGCCCTTCTT ACGGCTTAATGAAGTTGACACAAAATCAAAGTGCATATTATTGATATAGA GGGATACCTGAACATATTTCCCGTATAtcaatttctctttttctttcagG CGAAACTTTGAATATCAAGGATGCTTACTCACACCCTCTCTTTTATAAAG AAGTCGACCAAAAAACTGGATTCAAAACTAGGTAAAAACTAACTTCGGAT TCAAAAGTTATTTCTTcctcaatttttaaaatttttccagaAATAATTAA CCTGTTAgattaattttctttaaaatatctttccaacggtgtacaTAAAA AAGTGTGCTGAGAAAGATACAGTTTATACAAATTACCCAAAGTTGAATAT TATATTCTCTTCTTTTTATTTCCAGGCATATTTTATGTTTTCCTATTCGC TCAGTATCTGGTGAGtttcttctttcatttcatCCATTCAAAACTTTACT AAACCTTTAAGGTGAAATGGCCGGTAAACATTGCTTGTCTTTTCTATACA AatgataaagaataaaaaagaatttatatCAAGGACTATTATTTGTAAGC TTCAAAATTCCAAATGGTAGAAAGTTTCCACCTaaataatttgtaaaact tTGTAAACTAGTCCTCAAACGTAATTCTAAGGCGAATGGTGCTGATAATG TTTACTTCTATCTTTGGTTACAGAGCAAATTATCGGTGTAGCTCAACTAT GTAACAAATTAAATGGGAATTGTTTTACGAAATTCGACGAAGAACGGACA CTAGGATTTGCGATTTTTGTTGGTCTTTCGCTCGTACAGGTATGTAGTAT GCTGGTGTTCAAAGTTTTGTAAACTCTCTATACTGACTTCATTCTACTAT AGTTTGAACCCTCGGTACAGTTTTGAATTGTAGGGAGTGAGAAAATTATG ACATCTTCCCAAAAGCCATAGCCATCTTAATCTCTTACTTTATTGAAGCA CATGGATTGTGTAAAGGACATCATTTAAAGTATCAGGATATATCAGGAGA TACCTTCATGATCATGTGCTTACACAAcatttcaaaacaatagaaacttt tcCCCCTCCCGAGCAGActagagtcgtttataatgcatgtaatacataGT ATAGGTGTTTAATGATGATACggttattgttacgggatttagtttgtata aaattgactaaaatttgataaatccctccattactttttgctttatttct actgaaTTAGTAGTCTACCTTGCTAGACTACCTTCCGAGACGTACGAgca cagtttttgaaaaattattttgtttaattctgctttgtcagcatagaggt GCGTGCCTCCTTTCTATATCATAATAAAGAATATAACTTAAGGCTATACA ATATTAAACGAGTATGATTTAATTGTCACCTTTATCATTTACTTGTCCAG AGTTTGCTTTACAAGAAAGCAACCGATGCCAAACAACGAAGCAAACTCGC CAACGAACTTATGCTTTATCATATGATGGTATGTTGTTACACAAATAGCT CTACACtaaaattttgttcttattaagtATATGAAAAGTGGTTTGAATAT TTTCTATGAATTCTATGAATTCAATGTGTTATGAAGATGAATAGTTTCTC AATGAGTCCATCAGGTTCGGTCCAATGATCTGAGAACGTTGGAGAATAAA TGTAGTCCACGAATCCTTTTttatttgcaaagaaaaaataacatcTAACT TAATACAATAGTGATCTGGGTTTTTACGCCAACTATGGTTACTCGTatat ttttcatgatattttcattttcactgctTACCAGGTCTCACAAGAAGAAA TTGACAGTTATGTGAAGGTTGCCATGCCAACGAAAGATTCTCTTCATCCG GATATGGATAAATTCAGTTTCATGCCAAGAATCTCTTTTGCTGAAACTGA CAGCATAAAGGTATAATGATGATTAATTGATGACTTTTTACattggagtc tctttaacttgaatatctccttaactcgtACAAATTTGTGTTCTCCGTGC GgatttgagttatggagactccattgtATTAATATTATCCCATGACCCAG TCCATTCGACTTTCATTCAAATTAATCCCGTTAACCTAGATTTTTTCCTA TATTTTAAAGTCTTTGCAACTTTACAAGGAGATgtattgataatttttta tctatatTTGTAAGTCAGAGTCGATTTGCCAGTGTCTTGTAGAACTATCT TTTTGTCACCGTTTTTATTGATTTATAATTTACTCTCTTTCTCCAGGTTG TTTTGAGTATGTTCAATGATCTCAATGTCATCAAACGTTGGAAAGTTTCA GAATCAACATTAGTCAGGTATATGATCATTTCTAAGCTAAGCCCAAAGTT AAAGAGATGATCATATGGCCTAAGGTTTTTGGCCAACTAAAACCTTCCAC ATAAAGCAATTAAAATATCTAGTTTCTGTGCGGTTCTTAAGTTAAAATTC TATTATTTTCATGCTATTATTATTTTCATACCTATAACTTTACTTGATTA TCAGGACTTTGGCACATAAACAGAGAAAAATAAGTCTTGTTAAGGACCAT ATAAGGATTTTTCTCAAATGATGGTAATCTCATTAAATTCTCATTCAATT ACACCGAGTGCCACCATCGTGTCTGTAAACAGTTCCAATATCTACAGAGA ATTCATTTCCGTAGAGAGTCTGTACTACGCAACGTTATACGTGAGGCAAA GCCCCTTTCTTTGAACATAAAATATGAGCAGGTTCTTTCTCTTTCTAGAT TTATATTAACAGTTCGAAGAGGGTATCGTGACGTTCCATATCATAATTGG ACGCATGCGTGGACTGTGGCTCATTTCTCATACACTTTATTGAAGAAAAC AAACGCGTTGGACTACTTAAGTGATTTAGAGGTGTTTGTCCTTCTGGTCT CTTGTTTATGTCATGATATTGATCACAGAGGAACCAATAACTCTTTCCAA ATATCATCGGTGAGTCCAATGGGTGAAATCCCACTTTATCAAACATACTG TATTTCGCAAAGAAGTAAATTTTGACATGtatgattttttacatttttag ttttaatgGACATTATGTTTGATTCCGACGgttgatattttttaataaaa cttgccaagaaaaaatatatattttgaagAGGTACTCGTGTTATCTCTCT ATTTCATTTTGTTCTAGTTTTACCGATCATGAATTTCACGGTATAAATCC CTTATCTTTCAGCAATCTGTGTTAGCTTCATTATACAGTTCAGCTGGTTC AGTGTTAGAACGTCACCATTTTGCACAAGCAATGTGTATCGTTCAAACGG AACACAACAACGTCTTTGAAAGCCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_041561XLOC_041561Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00066419-exon-scaffold_455-1491911889:311092..311132TCONS_00066419-exon-scaffold_455-1491911889:311092..311132Clytia hemisphaericaexon
TCONS_00066419-exon-scaffold_455-1510915933:311092..311132TCONS_00066419-exon-scaffold_455-1510915933:311092..311132Clytia hemisphaericaexon
TCONS_00066419-exon-scaffold_455-1575043694:311092..311132TCONS_00066419-exon-scaffold_455-1575043694:311092..311132Clytia hemisphaericaexon
TCONS_00066419-exon-scaffold_455-1491911889:312897..312948TCONS_00066419-exon-scaffold_455-1491911889:312897..312948Clytia hemisphaericaexon
TCONS_00066419-exon-scaffold_455-1510915933:312897..312948TCONS_00066419-exon-scaffold_455-1510915933:312897..312948Clytia hemisphaericaexon
TCONS_00066419-exon-scaffold_455-1575043694:312897..312948TCONS_00066419-exon-scaffold_455-1575043694:312897..312948Clytia hemisphaericaexon
TCONS_00066419-exon-scaffold_455-1491911889:313501..313603TCONS_00066419-exon-scaffold_455-1491911889:313501..313603Clytia hemisphaericaexon
TCONS_00066419-exon-scaffold_455-1510915933:313501..313603TCONS_00066419-exon-scaffold_455-1510915933:313501..313603Clytia hemisphaericaexon
TCONS_00066419-exon-scaffold_455-1575043694:313501..313603TCONS_00066419-exon-scaffold_455-1575043694:313501..313603Clytia hemisphaericaexon
TCONS_00066419-exon-scaffold_455-1491911889:313936..314047TCONS_00066419-exon-scaffold_455-1491911889:313936..314047Clytia hemisphaericaexon
TCONS_00066419-exon-scaffold_455-1510915933:313936..314047TCONS_00066419-exon-scaffold_455-1510915933:313936..314047Clytia hemisphaericaexon
TCONS_00066419-exon-scaffold_455-1575043694:313936..314047TCONS_00066419-exon-scaffold_455-1575043694:313936..314047Clytia hemisphaericaexon
TCONS_00066419-exon-scaffold_455-1491911889:314339..314378TCONS_00066419-exon-scaffold_455-1491911889:314339..314378Clytia hemisphaericaexon
TCONS_00066419-exon-scaffold_455-1510915933:314339..314378TCONS_00066419-exon-scaffold_455-1510915933:314339..314378Clytia hemisphaericaexon
TCONS_00066419-exon-scaffold_455-1575043694:314339..314378TCONS_00066419-exon-scaffold_455-1575043694:314339..314378Clytia hemisphaericaexon
TCONS_00066419-exon-scaffold_455-1491911889:314658..314794TCONS_00066419-exon-scaffold_455-1491911889:314658..314794Clytia hemisphaericaexon
TCONS_00066419-exon-scaffold_455-1510915933:314658..314794TCONS_00066419-exon-scaffold_455-1510915933:314658..314794Clytia hemisphaericaexon
TCONS_00066419-exon-scaffold_455-1575043694:314658..314794TCONS_00066419-exon-scaffold_455-1575043694:314658..314794Clytia hemisphaericaexon
TCONS_00066419-exon-scaffold_455-1491911889:315338..315398TCONS_00066419-exon-scaffold_455-1491911889:315338..315398Clytia hemisphaericaexon
TCONS_00066419-exon-scaffold_455-1510915933:315338..315398TCONS_00066419-exon-scaffold_455-1510915933:315338..315398Clytia hemisphaericaexon
TCONS_00066419-exon-scaffold_455-1575043694:315338..315398TCONS_00066419-exon-scaffold_455-1575043694:315338..315398Clytia hemisphaericaexon
TCONS_00066419-exon-scaffold_455-1491911889:315541..315622TCONS_00066419-exon-scaffold_455-1491911889:315541..315622Clytia hemisphaericaexon
TCONS_00066419-exon-scaffold_455-1510915933:315541..315622TCONS_00066419-exon-scaffold_455-1510915933:315541..315622Clytia hemisphaericaexon
TCONS_00066419-exon-scaffold_455-1575043694:315541..315622TCONS_00066419-exon-scaffold_455-1575043694:315541..315622Clytia hemisphaericaexon
TCONS_00066419-exon-scaffold_455-1491911889:315817..315851TCONS_00066419-exon-scaffold_455-1491911889:315817..315851Clytia hemisphaericaexon
TCONS_00066419-exon-scaffold_455-1510915933:315817..315851TCONS_00066419-exon-scaffold_455-1510915933:315817..315851Clytia hemisphaericaexon
TCONS_00066419-exon-scaffold_455-1575043694:315817..315851TCONS_00066419-exon-scaffold_455-1575043694:315817..315851Clytia hemisphaericaexon
TCONS_00066419-exon-scaffold_455-1491911889:316115..316919TCONS_00066419-exon-scaffold_455-1491911889:316115..316919Clytia hemisphaericaexon
TCONS_00066419-exon-scaffold_455-1510915933:316115..316919TCONS_00066419-exon-scaffold_455-1510915933:316115..316919Clytia hemisphaericaexon
TCONS_00066419-exon-scaffold_455-1575043694:316115..316919TCONS_00066419-exon-scaffold_455-1575043694:316115..316919Clytia hemisphaericaexon
TCONS_00066419-exon-scaffold_455-1491911889:317226..317351TCONS_00066419-exon-scaffold_455-1491911889:317226..317351Clytia hemisphaericaexon
TCONS_00066419-exon-scaffold_455-1510915933:317226..317351TCONS_00066419-exon-scaffold_455-1510915933:317226..317351Clytia hemisphaericaexon
TCONS_00066419-exon-scaffold_455-1575043694:317226..317351TCONS_00066419-exon-scaffold_455-1575043694:317226..317351Clytia hemisphaericaexon
TCONS_00066419-exon-scaffold_455-1491911889:317688..317758TCONS_00066419-exon-scaffold_455-1491911889:317688..317758Clytia hemisphaericaexon
TCONS_00066419-exon-scaffold_455-1510915933:317688..317758TCONS_00066419-exon-scaffold_455-1510915933:317688..317758Clytia hemisphaericaexon
TCONS_00066419-exon-scaffold_455-1575043694:317688..317758TCONS_00066419-exon-scaffold_455-1575043694:317688..317758Clytia hemisphaericaexon
TCONS_00066419-exon-scaffold_455-1491911889:318190..318400TCONS_00066419-exon-scaffold_455-1491911889:318190..318400Clytia hemisphaericaexon
TCONS_00066419-exon-scaffold_455-1510915933:318190..318400TCONS_00066419-exon-scaffold_455-1510915933:318190..318400Clytia hemisphaericaexon
TCONS_00066419-exon-scaffold_455-1575043694:318190..318400TCONS_00066419-exon-scaffold_455-1575043694:318190..318400Clytia hemisphaericaexon
TCONS_00066419-exon-scaffold_455-1491911889:318654..318766TCONS_00066419-exon-scaffold_455-1491911889:318654..318766Clytia hemisphaericaexon
TCONS_00066419-exon-scaffold_455-1510915933:318654..318766TCONS_00066419-exon-scaffold_455-1510915933:318654..318766Clytia hemisphaericaexon
TCONS_00066419-exon-scaffold_455-1575043694:318654..318766TCONS_00066419-exon-scaffold_455-1575043694:318654..318766Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_455supercontigscaffold_455:311092..318766 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0 0 0 0.251926 0 0.426165 0.691218 0.803782 2.38506e-07 3.52601e-10 8.50305e-05 0 1.37693e-05 6.48538e-06 0 0 0 0 4.21378e-09 2.23442e-05 0.00338379 0.00852181 0 0 0.184418 0.307961 0 0.021578 0.0641604 0
Blast
BLAST of TCONS_00066419 vs. Swiss-Prot (Human)
Match: PDE2A (cGMP-dependent 3',5'-cyclic phosphodiesterase OS=Homo sapiens GN=PDE2A PE=1 SV=1)

HSP 1 Score: 229.18 bits (583), Expect = 5.781e-64
Identity = 121/261 (46.36%), Postives = 177/261 (67.82%), Query Frame = 3
Query:   54 DKDLQKLKEVASVDIN---------IEQLLVVPAYSEVGDDVIALFCLFNKIGAKTGFTKLDEELMQMVVKNCRHIVCNALDWKSQLIIQRQNESLLEISKTLFSHLDDVSILLHKIMEEARNLTNAERCSLFLVDHNRGELIAKVFDG-IESENSSEIRIPITNGIAGYVATTGETLNIKDAYSHPLFYKEVDQKTGFKTRHILCFPIRSVSEQIIGVAQLCNKLNGNCFTKFDEERTLGFAIFVGLSLVQVCSMLVFKV 806
            DK   +LK++ S D+          ++ +L VP  S   D V+AL C FNK+     FT  DE ++Q        ++ + L ++ +  ++ + ++LL+++K LF+HLDDVS+LL +I+ EARNL+NAE CS+FL+D N  EL+AKVFDG +  + S EIRIP   GIAG+VATTG+ LNI DAY+HPLFY+ VD  TGF+TR+ILCFPI++ ++++IGVA+L NK+NG  F+KFDE+    F+I+ G+S+    S+L  KV
Sbjct:  302 DKKSIQLKDLTSEDVQQLQSMLGCELQAMLCVPVISRATDQVVALACAFNKLEGDL-FTDEDEHVIQHCFHYTSTVLTSTLAFQKEQKLKCECQALLQVAKNLFTHLDDVSVLLQEIITEARNLSNAEICSVFLLDQN--ELVAKVFDGGVVDDESYEIRIPADQGIAGHVATTGQILNIPDAYAHPLFYRGVDDSTGFRTRNILCFPIKNENQEVIGVAELVNKINGPWFSKFDEDLATAFSIYCGISIAH--SLLYKKV 557          

HSP 2 Score: 201.06 bits (510), Expect = 1.880e-54
Identity = 101/201 (50.25%), Postives = 139/201 (69.15%), Query Frame = 2
Query: 1382 LVQSLLYKKATDAKQRSKLANELMLYHMMVSQEEIDSYVKVAMPTKDSLHPDMDKFSFMPRISFAETDSIKVVLSMFNDLNVIKRWKVSESTLVRFILTVRRGYRDVPYHNWTHAWTVAHFSYTLLKKTNALDYLSDLEVFVLLVSCLCHDIDHRGTNNSFQIXXXXXXXXXXXXXGSVLERHHFAQAMCIVQTEHNNVFE 1984
            +  SLLYKK  +A+ RS LANE+M+YHM VS +E    +   +    ++  +   F++ PR S  E D+   +LSM  D+N I  +K+   TL RF L V++GYRD PYHNW HA++V+HF Y L K     +YL D+E+F L +SC+CHD+DHRGTNNSFQ++S+SVLA+LYSS GSV+ERHHFAQA+ I+ T   N+F+
Sbjct:  548 IAHSLLYKKVNEAQYRSHLANEMMMYHMKVSDDEYTKLLHDGIQPVAAIDSNFASFTYTPR-SLPEDDTSMAILSMLQDMNFINNYKIDCPTLARFCLMVKKGYRDPPYHNWMHAFSVSHFCYLLYKNLELTNYLEDIEIFALFISCMCHDLDHRGTNNSFQVASKSVLAALYSSEGSVMERHHFAQAIAILNTHGCNIFD 747          
The following BLAST results are available for this feature:
BLAST of TCONS_00066419 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
PDE2A5.781e-6446.36cGMP-dependent 3',5'-cyclic phosphodiesterase OS=H... [more]
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