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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00066380 ID=TCONS_00066380|Name=TCONS_00066380|organism=Clytia hemisphaerica|type=transcript|length=2022bp
CTTAACAGTTCCACAGTTTCCCACATCGCTTCTAGAAAATTCAATCCGAA
AATACCACTGGATTTTCTCTTCTGTGAAAATACCACTGGGCTTTCTTAGT
AAATTTCTACCATTATCTCCAAAGTTTCACGGTTTGCACAGCCTTTCCGC
GAAACCAACTTAAAAAATTCCACCAGTTTCTAGTTAACTGCTACCACAGA
CTCTTCAAAATTCTCTGTTTGTTACACCTCGCCTCAAAAATTGTGTTGCC
AAAATACCACTGAATTTGCTCAATGTTTAATTACCACGTTTCAAAGATTC
ACGGTTTGCAAACCCTCTCCTAGAAAACTCACNACCACGTTTCAAAGATT
CACGGTTTGCAAACCCTCTCCTAAAAAAACCCAATTCGAAAATATCACCA
TTTTCCAAACTCTCATGGGCTGCCACAcctctcataaaaaaattcacttc
aaaaacACCACCAGTGTTCTCAGTATTTTACCAACCCTCCACAGTCTCAG
TTTCTTCAAGGAATTTAGCCATACCACCAGTTTTTCCTAGTAGATTTATG
ATCATCTCTCTTCAGTACCACGGTTTGCTAATTTCCTCTCAAAGTATCAG
CAATAAGATACCAACTCTCTTCTCAATATTTTAAGGTTACACTAGAATCT
CAGGTTTCATGGCTCACATTTCCGATCCAAGATTCTAACGAATTATTAcc
aaatatctaaaaatttccACATTTCACCTCTCTCAGTATTTCTTTATAAA
TCAGTCTCAAAATAtacatcaaaataaataataattcaCTGCAAATTGAT
CATCAGTCTAGTCAACTTCACCacaccaatttcaaaaaaccacTGTAACA
ACTCTCCTCCAAAGGTTCAGTCTCCGAATACCACTGATACCGGTACCACc
attttctctttctctttctccCACTTTTTCACAGTTTGCCACACCTCTCC
TCGAGAGATTCATTCCAGTTACCGCCAATTATCTCAACGAGTTATAACCA
CTTCGATACACGTCTCCTCCAAAAAGTTCAGTCCCAATAAACCactgcaa
atctcagtgaatttcaaatatttcaacaGCTTCCGTTTTGTTCACCTCTC
CCGGAGAGATTCCAAATTTCCACCAGTCTTTTCAATGAGTTATTACCACT
CCGTCACACCTCTCCTCCAAAAATTTCAATCTCAATAAATTTCAGTCCTC
AATAAATCactgcaaatctcagtgaattTCACATCTTCTAACAGGTCAAG
GTTTGTCACATCTTTCTTTTCACATCCTAAATTACCATCGATTTGATCAC
CACACCTCTCCACATCTTTCAACAGTTTCACACTTTGCAACACCTCTCCT
CAaaagttcattttcaaaattaattcaaaatttcttaaCGTGCTATTACC
ACACTCATTCCTAAATTTTAACGTCCTCAGAATAGATTCCAACGCTTATC
AAGCAAGAAATGGTGAAAAGCAGCCATCATGGCTCAACCGTCGATTCAGC
CAAGAGTATAATGCCTTCCAAGACATGGTCAACTGGCTAGGAAAGATGAG
AAGGAGCTAAGGACGGATGTTTCGTTGATTACACATCACATCCCTCTGTC
AGCATGACGGAATTGCCCGACGATGAAACTTTTCTGAAAAACCATTAAAT
GATCCAGCATGGCTTTTTCAGGCGACGCCCTAGAAGTGAGGCCATTGTGG
TGGCAATACAAGAAACACGTCTAAATAGACACCCAATACCAAAAACTTCG
GATTCGAACAATTGAAATTAACCTGATCAATCTGGTGCGACTTTCACATT
CCAACAAAATTAGAAgaAAGCACCTAACTTCGAACTTCAAAGATTGCCAT
CAGTTCGCGTAGAATTTCCAATGGATTTTGTACAACATAATCGAATGCTG
GTATTTCTTATTCAAGAATGAAGTTAACTACTACAAAGCAGAGTACAGAT
TGttaaattcacaaaaatattttttctttataatgaaTATATAACTTGAT
CATCAGAACAAAAGTTTTCTCC Run BLAST on NCBI transcript from alignment at scaffold_454:112345..116519- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00066380 ID=TCONS_00066380|Name=TCONS_00066380|organism=Clytia hemisphaerica|type=transcript|length=4175bp|location=Sequence derived from alignment at scaffold_454:112345..116519- (Clytia hemisphaerica)
CTTAACAGTTCCACAGTTTCCCACATCGCTTCTAGAAAATTCAATCCGAA
AATACCACTGGATTTTCTCTTCTGTGAAAATACCACTGGGCTTTCTTAGT
AAATTTCTACCATTATCTCCAAAGTTTCACGGTTTGCACAGCCTTTCCGC
GAAACCAACTTAAAAAATTCCACCAGTTTCTAGTTAACTGCTACCACAGA
CTCTTCAAAATTCTCTGTTTGTTACACCTCGCCTCAAAAATTGTGTTGCC
AAAATACCACTGAATTTGCTCAATGTTTAATTACCACGTTTCAAAGATTC
ACGGTTTGCAAACCCTCTCCTAGAAAACTCACNACCACGTTTCAAAGATT
CACGGTTTGCAAACCCTCTCCTAAAAAAACCCAATTCGAAAATATCACCA
TTTTCCAAACTCTCATGGGCTGCCACACCTCTCATAAAAAAATTCACTTC
AAAAACACCACCAGTGTTCTCAGTATTTTACCAACCCTCCACAGTCTCAG
TTTCTTCAAGGAATTTAGCCATACCACCAGTTTTTCCTAGTAGATTTATG
ATCATCTCTCTTCAGTACCACGGTTTGCTAATTTCCTCTCAAAGTATCAG
CAATAAGATACCAACTCTCTTCTCAATATTTTAAGGTTACACTAGAATCT
CAGGTTTCATGGCTCACATTTCCGATCCAAGATTCTAACGAATTATTACC
AAATATCTAAAAATTTCCACATTTCACCTCTCTCAGTATTTCTTTATAAA
TCAGTCTCAAAATATACATCAAAATAAATAATAATTCACTGCAAATTGAT
CATCAGTCTAGTCAACTTCACCACACCAATTTCAAAAAACCACTGTAACA
ACTCTCCTCCAAAGGTTCAGTCTCCGAATACCACTGATACCGGTACCACC
ATTTTCTCTTTCTCTTTCTCCCACTTTTTCACAGTTTGCCACACCTCTCC
TCGAGAGATTCATTCCAGTTACCGCCAATTATCTCAACGAGTTATAACCA
CTTCGATACACGTCTCCTCCAAAAAGTTCAGTCCCAATAAACCACTGCAA
ATCTCAGTGAATTTCAAATATTTCAACAGCTTCCGTTTTGTTCACCTCTC
CCGGAGAGATTCCAAATTTCCACCAGTCTTTTCAATGAGTTATTACCACT
CCGTCACACCTCTCCTCCAAAAATTTCAATCTCAATAAATTTCAGTCCTC
AATAAATCACTGCAAATCTCAGTGAATTTCACATCTTCTAACAGGTCAAG
GTTTGTCACATCTTTCTTTTCACATCCTAAATTACCATCGATTTGATCAC
CACACCTCTCCACATCTTTCAACAGTTTCACACTTTGCAACACCTCTCCT
CAAAAGTTCATTTTCAAAATTAATTCAAAATTTCTTAACGTGCTATTACC
ACACTCATTCCTAAATTTTAACGTCCTCAGAATAGATTCCAACGCTTATC
AAGCAAGAAATGGTGAAAAGCAGCCATCATGGCTCAACCGTCGATTCAGC
CAAGAGTATAATGCCTTCCAAGACATGGTCAACTGGCTAGGAAAGATGAG
AAGGAGCTAAGGACGGATGTTTCGTTGATTACACATCACATCCCTCTGTC
AGCATGACGGAATTGCCCGACGATGAAACTTTTCTGAAAAACCATTAAAT
GATCCAGCATGGGTAAGTCTCTTGAATTACAACCACTACAACTTGATTAG
GCTCTAAACCGAAAGTGTTTACTGATGTTTGCTTTATTGATTTTCGTTCC
TTATTGTATACAAAAGGCCTTATTGAACCAAGGGAACATTTTTCAAGAAT
AGCCCTGCATTGCCAAAATGAAATTTTGCAGGTCATTTTACAATATCTTA
TCTATATCTATATTTTGTTTTGTTGCTGATATCCGGATAAATACATGAAT
ACATGCAAGGACTTGAAATTCTGGCTTGTCATGAAAAAACAATTCTTAAA
ACCCATTCCCACTGGAAAATTTGGCAAAAATTTGTTTCCTGATGCGAAAA
TACCCTGGAATTTTAGCTCCACTTTAATCTAAAGATTACACTCCTAAGTT
TTTTTAACTTTGGAACAACGAAATTTCTATCCCCATTGGGATTTCAATGG
GGATTTTTATCTCGACTGAAGAAAAAAGTTCCACCGGGGCTGCGAGACAG
GGGTGTTCTTAATTAATGGCTTCTTTTTTTGATAGCTTTTTCAGGCGACG
CCCTAGAAGTGAGGCCATTGTGGTGGCAATACAAGAAACACGTCTAAATA
GACACCCAATACCAAAAACTTCGGATTCGAACAATTGAAATTAACCTGAT
CAATCTGGTGCGACTTTCACATTCCAACAAAATTAGAAGTAGGTAAATGA
CGTGGCTAGTTCTGGGAATAATATATTTAGATGTTAAAAATATCATCTGG
ACTTCCTCTGGACTAATAGAATCTCTTTGTGGCAAAAACACTCTCCTTGT
CACTCATTAAACGCTGGTGACCCCCTGAAAAGGCACGACAAGGAAACATA
GTTTTAAATTCTGCTTCACTTTTTTCGGGACACAATGCTTTGATATTTTA
ATTTTTGAATTATATTATTTAAGATTATCACTCGGCATCTAGAATTTAAC
CATACGCCAAATGAACTGTTCAACCTTGAGGCTTTTTACGGAATCTCATG
AATTTATTTTCTTCTAGGAATCTGTCCAATCAAGGAACTTGGTTCAATCA
GGCTATCACAACACCACACCAATGGATATTTTATGAATGTCTTCATGTGT
GATCTCGTTTTGTCCCAGAAAAGTCACATATCGAAATTTGCAATGTATGA
TGACCAACCAGTTCGAAGTAATGTGTGACATCTGCATTTGGTACAGAGGT
AAGGTGATATTTTACAATATATCTGATATAGAAATTGATCACTCCATTTT
ATTTAAGGGTGTACTTCAAGATGAATTTTTAGGGGTATAAGAAAGTTTAA
CTATTTTTCCAGAGAGTTTGGTTTGGGTCGTTCTTTCTCAAAAGGGGTTC
GTTCTGCGATCAAGCATCGCCTATGTTTTCCCGAGAGTTCTAAAGGAAAA
TATTTTGAATATCTATTGGGTTAAAAGTTATTTTGAAATTTCCAAAGAGT
TAATACTAATTTTGGTCCATCAATCCCACTTTTTGTTTATTTTTGCAAAT
TATGCCATTTACCAGGGGCTACCCGCACAATTTCAATAAATATTTTGGCT
TGAAAAGATCTGTCAAGAGAAACAGACCTTTCAAGCCAAAAGAGTCTTTC
AGGCCAAAAGATTTAGTGAAATTGTGTGTTTACCCCTTGCATGAACATTA
AATTCAAGACAAAGAGGCGCCTTTTCAATCTACAAAAGTACAATGCAAAT
TATATTAGTAGTATGACTTGATTTCCCCAGTGGAAAAATACCCTGGAATT
TCAAACACACTGGGAAATTTAGTTTGATTTTATCCCATTCGAAATTCAAT
GTTTAAAAATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNTATCCCCATCGGAATTTCAATAGAAGTTTTTATCCCCGCACCGAGGAA
AAAAGTTCCACCGGGGCTGTGAGACAGGGGTGTAAAGTTCCTTTAACATC
ATGTTAGGTTTTTAAAAGGGATCATTATTATATCAGCAGTAAAAAATAGT
CTTTTTGACTGCGACAGATAGTTGATCTATTCAAGGAATTCTTGATGAAG
CTTAGAAGTTCAATCAAAAGGTCCAATATTCAGAAAGAGCCTCATTCTCA
ATTATCAATTATCTATATAGTGATTAAGAATTTCTTGTTTTATTGTTGAA
TTATTGTTTTGTTTTCAGGAAAGCACCTAACTTCGAACTTCAAAGATTGC
CATCAGTTCGCGTAGAATTTCCAATGGATTTTGTACAACATAATCGAATG
CTGGTATTTCTTATTCAAGAATGAAGTTAACTACTACAAAGCAGAGTACA
GATTGTTAAATTCACAAAAATATTTTTTCTTTATAATGAATATATAACTT
GATCATCAGAACAAAAGTTTTCTCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
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| TCONS_00066380-exon-scaffold_454-1575043694:114858..116519 | TCONS_00066380-exon-scaffold_454-1575043694:114858..116519 | Clytia hemisphaerica | exon |
| TCONS_00066380-exon-scaffold_454-1575043694:114182..114334 | TCONS_00066380-exon-scaffold_454-1575043694:114182..114334 | Clytia hemisphaerica | exon |
| TCONS_00066380-exon-scaffold_454-1575043694:112345..112551 | TCONS_00066380-exon-scaffold_454-1575043694:112345..112551 | Clytia hemisphaerica | exon |
| TCONS_00066380-exon-scaffold_454-1510915933:114858..116519 | TCONS_00066380-exon-scaffold_454-1510915933:114858..116519 | Clytia hemisphaerica | exon |
| TCONS_00066380-exon-scaffold_454-1510915933:114182..114334 | TCONS_00066380-exon-scaffold_454-1510915933:114182..114334 | Clytia hemisphaerica | exon |
| TCONS_00066380-exon-scaffold_454-1510915933:112345..112551 | TCONS_00066380-exon-scaffold_454-1510915933:112345..112551 | Clytia hemisphaerica | exon |
| TCONS_00066380-exon-scaffold_454-1491911889:114858..116519 | TCONS_00066380-exon-scaffold_454-1491911889:114858..116519 | Clytia hemisphaerica | exon |
| TCONS_00066380-exon-scaffold_454-1491911889:114182..114334 | TCONS_00066380-exon-scaffold_454-1491911889:114182..114334 | Clytia hemisphaerica | exon |
| TCONS_00066380-exon-scaffold_454-1491911889:112345..112551 | TCONS_00066380-exon-scaffold_454-1491911889:112345..112551 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_454 | supercontig | scaffold_454:112345..116519 - |
Blast
The following BLAST results are available for this feature:
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