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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00066317 ID=TCONS_00066317|Name=TCONS_00066317|organism=Clytia hemisphaerica|type=transcript|length=1206bp
TTTTGCATGATGCATCAAATACTATTCTCACTTTCGTAGATTGTTTATCT
TCTCTCACTACCGGTCTGTGCGGCAAGTAATGTGTTTGACCAATTTCGTA
ATGTTCAACTTTTTCGATCACCCCGGCGGAGAGCTGTTGTTGTAAAATCT
CatcataagttttcaaaaattctggGTTGTCTTTGAACTGTTTCTCAACC
ATATTTTTCAAACGAATCTTACTTCTGGCGTAGTTGTCTCCAAAATTTGT
AATCTCCTCCTTGAAGGGTAACTTGATTTCATAATGACCATCTTTGAAAA
CTGTGTCACTTTCGAACTCATCAAGAATCTCTTGTACGTTGGGGTCACTT
TTCGGGTTTGTCTCAAAACACTTCGCGTAACTTTCTCTGATCTGTTCATC
AGGACTAAGACTTGTAGCACATTTCATCGTATGCGTACTGAATACTGACG
TTTTAGAGCTTCCGGAATTCTCATCAACCGGACCACTCAAAATAAAACCC
AAATTCGTTTCAACAGCAACAGGACCCGAAGTCCCTTTAATTTGATTACT
CCCAACAAATCTCCAGTAATCTTTGCACccaatcaaaatatcaattttca
ACGGGGAATTATAGAGATTACTATCTGCAAGCTCAATCCCTTGTAAATGG
GAATAGCTTTTCACGGCAACCTCAATGGGTTGATTCTCAATAGGAAGACA
AATATCAGACACTAAGGCCTTCACCAAAACTCATTGGTTTTTGTAAACAC
TTCAAATTCAACAAGTTCTAAATCCTTTTCAGATTTTCCGAAGGATTTGA
TGCTCACTGTTTTCTTGTCAATTGGTTctagtttcaaaagttttttcgcT
TCAGGGCTGATGTAAGTTTGCTGGCTACCACTGTCAAATAAGAGACGTAA
ATTTTCCGAATTCTTTCCGTTTTTGATTTTTGCAACAGCAGTTTGTAACA
AAACAGTTTGAAATTTCGCAGAAGTCAAGTTTGATGTCGTTGTGTCAGGC
TCAGTTTTTTGAGTTGTAGCAGGAGGGGTAGGAGCTGGGCTTTGTGAATC
GTTTTTAGActcgtctttctttttaaaggTACATATGGCGTTGTTATGTC
TACCGCCACATTTAAAACATTTctactttttcgagtaattagAAGACATA
TGATTAGCTgcaaaacaaataaaacaacGTCTTTCTCTTTGCAAAATTGA
TCTCCT Run BLAST on NCBI protein sequence of TCONS_00066317-protein >TCONS_00066317-protein ID=TCONS_00066317-protein|Name=TCONS_00066317-protein|organism=Clytia hemisphaerica|type=polypeptide|length=142bp
MKCATSLSPDEQIRESYAKCFETNPKSDPNVQEILDEFESDTVFKDGHYE
IKLPFKEEITNFGDNYARSKIRLKNMVEKQFKDNPEFLKTYDEILQQQLS
AGVIEKVEHYEIGQTHYLPHRPVVREDKQSTKVRIVFDASCK Run BLAST on NCBI transcript from alignment at scaffold_451:1447291..1448496 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00066317 ID=TCONS_00066317|Name=TCONS_00066317|organism=Clytia hemisphaerica|type=transcript|length=1206bp|location=Sequence derived from alignment at scaffold_451:1447291..1448496 (Clytia hemisphaerica)
AGGAGATCAATTTTGCAAAGAGAAAGACgttgttttatttgttttgcAGC
TAATCATATGTCTTctaattactcgaaaaagtagAAATGTTTTAAATGTG
GCGGTAGACATAACAACGCCATATGTAcctttaaaaagaaagacgagTCT
AAAAACGATTCACAAAGCCCAGCTCCTACCCCTCCTGCTACAACTCAAAA
AACTGAGCCTGACACAACGACATCAAACTTGACTTCTGCGAAATTTCAAA
CTGTTTTGTTACAAACTGCTGTTGCAAAAATCAAAAACGGAAAGAATTCG
GAAAATTTACGTCTCTTATTTGACAGTGGTAGCCAGCAAACTTACATCAG
CCCTGAAgcgaaaaaacttttgaaactagAACCAATTGACAAGAAAACAG
TGAGCATCAAATCCTTCGGAAAATCTGAAAAGGATTTAGAACTTGTTGAA
TTTGAAGTGTTTACAAAAACCAATGAGTTTTGGTGAAGGCCTTAGTGTCT
GATATTTGTCTTCCTATTGAGAATCAACCCATTGAGGTTGCCGTGAAAAG
CTATTCCCATTTACAAGGGATTGAGCTTGCAGATAGTAATCTCTATAATT
CCCCGTtgaaaattgatattttgattggGTGCAAAGATTACTGGAGATTT
GTTGGGAGTAATCAAATTAAAGGGACTTCGGGTCCTGTTGCTGTTGAAAC
GAATTTGGGTTTTATTTTGAGTGGTCCGGTTGATGAGAATTCCGGAAGCT
CTAAAACGTCAGTATTCAGTACGCATACGATGAAATGTGCTACAAGTCTT
AGTCCTGATGAACAGATCAGAGAAAGTTACGCGAAGTGTTTTGAGACAAA
CCCGAAAAGTGACCCCAACGTACAAGAGATTCTTGATGAGTTCGAAAGTG
ACACAGTTTTCAAAGATGGTCATTATGAAATCAAGTTACCCTTCAAGGAG
GAGATTACAAATTTTGGAGACAACTACGCCAGAAGTAAGATTCGTTTGAA
AAATATGGTTGAGAAACAGTTCAAAGACAACccagaatttttgaaaactt
atgatGAGATTTTACAACAACAGCTCTCCGCCGGGGTGATCGAAAAAGTT
GAACATTACGAAATTGGTCAAACACATTACTTGCCGCACAGACCGGTAGT
GAGAGAAGATAAACAATCTACGAAAGTGAGAATAGTATTTGATGCATCAT
GCAAAA Coding sequence (CDS) from alignment at scaffold_451:1447291..1448496 >TCONS_00066317 ID=TCONS_00066317|Name=TCONS_00066317|organism=Clytia hemisphaerica|type=CDS|length=426bp|location=Sequence derived from alignment at scaffold_451:1447291..1448496 (Clytia hemisphaerica)
ATGAAATGTGCTACAAGTCTTAGTCCTGATGAACAGATCAGAGAAAGTTA
CGCGAAGTGTTTTGAGACAAACCCGAAAAGTGACCCCAACGTACAAGAGA
TTCTTGATGAGTTCGAAAGTGACACAGTTTTCAAAGATGGTCATTATGAA
ATCAAGTTACCCTTCAAGGAGGAGATTACAAATTTTGGAGACAACTACGC
CAGAAGTAAGATTCGTTTGAAAAATATGGTTGAGAAACAGTTCAAAGACA
ACccagaatttttgaaaacttatgatGAGATTTTACAACAACAGCTCTCC
GCCGGGGTGATCGAAAAAGTTGAACATTACGAAATTGGTCAAACACATTA
CTTGCCGCACAGACCGGTAGTGAGAGAAGATAAACAATCTACGAAAGTGA
GAATAGTATTTGATGCATCATGCAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00066317-exon-scaffold_451-1491911889:1447291..1448496 | TCONS_00066317-exon-scaffold_451-1491911889:1447291..1448496 | Clytia hemisphaerica | exon |
| TCONS_00066317-exon-scaffold_451-1510915933:1447291..1448496 | TCONS_00066317-exon-scaffold_451-1510915933:1447291..1448496 | Clytia hemisphaerica | exon |
| TCONS_00066317-exon-scaffold_451-1575043694:1447291..1448496 | TCONS_00066317-exon-scaffold_451-1575043694:1447291..1448496 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_451 | supercontig | scaffold_451:1447291..1448496 . |
Blast
The following BLAST results are available for this feature:
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