TCONS_00066313 (transcript) - C. hemisphaerica

Overview
NameTCONS_00066313
Unique NameTCONS_00066313
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length419

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00066313 ID=TCONS_00066313|Name=TCONS_00066313|organism=Clytia hemisphaerica|type=transcript|length=419bp
GCGGGATAGAATCAATCGAGCGTCCTTTGCAGAAGAGATCTTTACGGCAT
TCATTTGTTGTGAGACAGTTTGATGTTTTGTTGTAAAGTAGTACTGTGAA
GCGCTCGATAATAGGCAGTGACTCCTCTACGTCGGATTGTATAGTGATGG
TCGGTTACTTTACTTTTCGAAGACAGAAGTAATTTCTTCGAACGACTCCC
AAACTTTCCATGCTGAATCCTTTGAAACACGTGAGAAAAAAGATACTTGA
TCACAGCCTGTAAAGGCATGGAAAAACGAAAGTGCTAAGGCTTCTTTCAG
CCTTGTAATGACATGTCATTTACGTGACGAAATACCCTTGTATCCGCCTC
TTCATGGTTGCAAGGTGAAATGAACGAAGATGGCAGCTGGCCATTGTTGG
TAACACAATTCACATCGTA
Run BLAST on NCBI

transcript from alignment at scaffold_451:1410870..1411288

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00066313 ID=TCONS_00066313|Name=TCONS_00066313|organism=Clytia hemisphaerica|type=transcript|length=419bp|location=Sequence derived from alignment at scaffold_451:1410870..1411288 (Clytia hemisphaerica)
TACGATGTGAATTGTGTTACCAACAATGGCCAGCTGCCATCTTCGTTCAT
TTCACCTTGCAACCATGAAGAGGCGGATACAAGGGTATTTCGTCACGTAA
ATGACATGTCATTACAAGGCTGAAAGAAGCCTTAGCACTTTCGTTTTTCC
ATGCCTTTACAGGCTGTGATCAAGTATCTTTTTTCTCACGTGTTTCAAAG
GATTCAGCATGGAAAGTTTGGGAGTCGTTCGAAGAAATTACTTCTGTCTT
CGAAAAGTAAAGTAACCGACCATCACTATACAATCCGACGTAGAGGAGTC
ACTGCCTATTATCGAGCGCTTCACAGTACTACTTTACAACAAAACATCAA
ACTGTCTCACAACAAATGAATGCCGTAAAGATCTCTTCTGCAAAGGACGC
TCGATTGATTCTATCCCGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_041513XLOC_041513Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00066313-exon-scaffold_451-1491911889:1410870..1411288TCONS_00066313-exon-scaffold_451-1491911889:1410870..1411288Clytia hemisphaericaexon
TCONS_00066313-exon-scaffold_451-1510915933:1410870..1411288TCONS_00066313-exon-scaffold_451-1510915933:1410870..1411288Clytia hemisphaericaexon
TCONS_00066313-exon-scaffold_451-1575043694:1410870..1411288TCONS_00066313-exon-scaffold_451-1575043694:1410870..1411288Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_451supercontigscaffold_451:1410870..1411288 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.298024	0	0	0.277521	1.59479	1.44026	0.651603	1.62673	0.142364	0	0	0.337543	0.542234	0.350054	0	0	0	0.12999	0	0	0.163342	0.478036	0.193705	0.176106	0.906926	0.323764	0	0.247226	0	0.191045
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00066313 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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