TCONS_00066305 (transcript) - C. hemisphaerica

Overview
NameTCONS_00066305
Unique NameTCONS_00066305
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length493

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00066305 ID=TCONS_00066305|Name=TCONS_00066305|organism=Clytia hemisphaerica|type=transcript|length=493bp
TGATCTTCTACGATTCTGGGTGCAGCGATTTTGTTGTACGTGACCACGTG
GTCGATCAATTGGAACCGAGAGCCAGACTTCAAGAAAAGGGACCAATCAA
GCTTGGTGGTGTTGGCGACGTATCAACACTGTCATCCAAGGGCATCTACA
GTATCGATCTACCAACCTTTGACGGCTCAAATGTGACACTTACCGGTGTC
GCTCTCAAGAAGATCACTTCAACATTTCCAAATTACCCTCTCGATGGTCA
AGTCAAAGATGATATCCATGATGCATTTCGTCGGAGTGGAGAGAGTCCGT
CAACATTACCAAAGCTTCCATCATCCGTCGGAGGTGACGTCGACTTTATG
ATTGGCATACGATACCTAGGATACCACCCCAAGGTGATCTTCCAAATGCC
TTCAGGACTCACCATTTACAAATCATTGTTCAAAAATCTAGATGGCAGTC
GTGGTATAATTGGAGGACCACACGAAATATTCTCAATGATCGT
Run BLAST on NCBI

transcript from alignment at scaffold_451:1395863..1396355

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00066305 ID=TCONS_00066305|Name=TCONS_00066305|organism=Clytia hemisphaerica|type=transcript|length=493bp|location=Sequence derived from alignment at scaffold_451:1395863..1396355 (Clytia hemisphaerica)
ACGATCATTGAGAATATTTCGTGTGGTCCTCCAATTATACCACGACTGCC
ATCTAGATTTTTGAACAATGATTTGTAAATGGTGAGTCCTGAAGGCATTT
GGAAGATCACCTTGGGGTGGTATCCTAGGTATCGTATGCCAATCATAAAG
TCGACGTCACCTCCGACGGATGATGGAAGCTTTGGTAATGTTGACGGACT
CTCTCCACTCCGACGAAATGCATCATGGATATCATCTTTGACTTGACCAT
CGAGAGGGTAATTTGGAAATGTTGAAGTGATCTTCTTGAGAGCGACACCG
GTAAGTGTCACATTTGAGCCGTCAAAGGTTGGTAGATCGATACTGTAGAT
GCCCTTGGATGACAGTGTTGATACGTCGCCAACACCACCAAGCTTGATTG
GTCCCTTTTCTTGAAGTCTGGCTCTCGGTTCCAATTGATCGACCACGTGG
TCACGTACAACAAAATCGCTGCACCCAGAATCGTAGAAGATCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_041506XLOC_041506Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00066305-exon-scaffold_451-1491911889:1395863..1396355TCONS_00066305-exon-scaffold_451-1491911889:1395863..1396355Clytia hemisphaericaexon
TCONS_00066305-exon-scaffold_451-1510915933:1395863..1396355TCONS_00066305-exon-scaffold_451-1510915933:1395863..1396355Clytia hemisphaericaexon
TCONS_00066305-exon-scaffold_451-1575043694:1395863..1396355TCONS_00066305-exon-scaffold_451-1575043694:1395863..1396355Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_451supercontigscaffold_451:1395863..1396355 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.680056	0	0	2.35849	2.94142	1.28691	1.982	0.0431216	1.14843	0	0.681404	0.482442	0.394849	0	0	0.0883487	0.12248	0.0918392	0.0800859	0	0.341626	0	0	1.32883	1.07731	0	0	0	0.0274395
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00066305 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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