TCONS_00066298 (transcript) - C. hemisphaerica

Overview
NameTCONS_00066298
Unique NameTCONS_00066298
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length607

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00066298 ID=TCONS_00066298|Name=TCONS_00066298|organism=Clytia hemisphaerica|type=transcript|length=607bp
TAAAATTACAAATAAATACTAAAGATAATCATTAAAAAATAACTTAAACA
TTAAAATCACTTTCAGATATCATCCATTCTTTCCGACACACCGTCTATCG
ACGCCGGACAAACCACCGATTTTCCGTCACAATCAATATTACATTCAAAT
GACATCCCGTTCTTCGTGGACGTCGATCTAACATCTTATGAACGTATCAA
ACGGATGAAAAAACCACTCCTCATAGCCCTACCTGctcaaattcaaaatg
gtagccatACCGTACCAACTAGAATCGTTGTTATGGAAACGACGAATATT
TTAGTGTCATCTGACGGATATTTGTTCGTTTTTGGCGTCATTTTTCTGAc
gcttatttttcatttcgtatCAAAGCTTCTCATTGGTTATTGAAAAAGTC
TTCATTATCAAATTTTCGTGTCCCAGATGTTCGAGGCTGAATTCATGATG
atcatgacgtaatttttcaTATACGGAAACAATCAAAAAAGACCGGATGT
TTGTtatctccgagcagattctgatactccgCGCATGGCTACATTCActt
aaagcaaaacaatcgcaGCAAAATCAAACGTCATTCGCGActagaattca
tgatatg
Run BLAST on NCBI

transcript from alignment at scaffold_451:1074174..1074780

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00066298 ID=TCONS_00066298|Name=TCONS_00066298|organism=Clytia hemisphaerica|type=transcript|length=607bp|location=Sequence derived from alignment at scaffold_451:1074174..1074780 (Clytia hemisphaerica)
catatcatgaattctagTCGCGAATGACGTTTGATTTTGCtgcgattgtt
ttgctttaagTGAATGTAGCCATGCGcggagtatcagaatctgctcggag
ataACAAACATCCGGTCTTTTTTGATTGTTTCCGTATAtgaaaaattacg
tcatgatCATCATGAATTCAGCCTCGAACATCTGGGACACGAAAATTTGA
TAATGAAGACTTTTTCAATAACCAATGAGAAGCTTTGatacgaaatgaaa
aataagcgTCAGAAAAATGACGCCAAAAACGAACAAATATCCGTCAGATG
ACACTAAAATATTCGTCGTTTCCATAACAACGATTCTAGTTGGTACGGTa
tggctaccattttgaatttgagCAGGTAGGGCTATGAGGAGTGGTTTTTT
CATCCGTTTGATACGTTCATAAGATGTTAGATCGACGTCCACGAAGAACG
GGATGTCATTTGAATGTAATATTGATTGTGACGGAAAATCGGTGGTTTGT
CCGGCGTCGATAGACGGTGTGTCGGAAAGAATGGATGATATCTGAAAGTG
ATTTTAATGTTTAAGTTATTTTTTAATGATTATCTTTAGTATTTATTTGT
AATTTTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_041500XLOC_041500Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00066298-exon-scaffold_451-1491911889:1074174..1074780TCONS_00066298-exon-scaffold_451-1491911889:1074174..1074780Clytia hemisphaericaexon
TCONS_00066298-exon-scaffold_451-1510915933:1074174..1074780TCONS_00066298-exon-scaffold_451-1510915933:1074174..1074780Clytia hemisphaericaexon
TCONS_00066298-exon-scaffold_451-1575043694:1074174..1074780TCONS_00066298-exon-scaffold_451-1575043694:1074174..1074780Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_451supercontigscaffold_451:1074174..1074780 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.53484	0.869256	0.302787	0.197486	0	0	0.916829	1.07291	1.05163	1.4887	0.993419	1.0686	9.7819	7.01867	10.0727	5.8665	1.40526	2.53775	3.6008	2.67725	1.2066	1.38727	1.53309	1.57965	2.39264	2.90411	0.97783	0.260892	0	0.302408
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00066298 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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