TCONS_00066294 (transcript) - C. hemisphaerica

Overview
NameTCONS_00066294
Unique NameTCONS_00066294
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length430

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00066294 ID=TCONS_00066294|Name=TCONS_00066294|organism=Clytia hemisphaerica|type=transcript|length=430bp
NNGTTGAAGCTCTTTGTGTTCCGGACATTTGTAGCCCGATTGCAAACCAG
AAGTTGGATTGTGCAAAGAAGTTGAATGAATTCTCTGATTTGGTGTTTGC
AGACGTTTCCGAGGAGTTTGACTTGAGTATAGGGGTATTGGTTGGTATCG
ATTTTTATTTTCGCTTTTTTACTGGTAAGAGACGTGAGAGCAAGGAAGGC
GTTGTGGCTTGTGAATCTTCACTTGGTTGGATTTTGAGTGGATCTGTTGT
TTTCAAAGGTTTGACTGAAGTGACTTATAGTCATCAAATGAGAGTTGAGG
TACAAACTGTTGATCCACTTGATGCCAAGCTCCATAAGTTTTGGCAGATA
GAGGAGGCAGAGAGTGCCGAGGATAACTCAGTGATTAACCAATTTACCAA
AGACATTTACCATGATGGTACTAGGTATGT
Run BLAST on NCBI

protein sequence of TCONS_00066294-protein

>TCONS_00066294-protein ID=TCONS_00066294-protein|Name=TCONS_00066294-protein|organism=Clytia hemisphaerica|type=polypeptide|length=142bp
VEALCVPDICSPIANQKLDCAKKLNEFSDLVFADVSEEFDLSIGVLVGID
FYFRFFTGKRRESKEGVVACESSLGWILSGSVVFKGLTEVTYSHQMRVEV
QTVDPLDAKLHKFWQIEEAESAEDNSVINQFTKDIYHDGTRY
Run BLAST on NCBI

transcript from alignment at scaffold_451:973323..973752

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00066294 ID=TCONS_00066294|Name=TCONS_00066294|organism=Clytia hemisphaerica|type=transcript|length=430bp|location=Sequence derived from alignment at scaffold_451:973323..973752 (Clytia hemisphaerica)
ACATACCTAGTACCATCATGGTAAATGTCTTTGGTAAATTGGTTAATCAC TGAGTTATCCTCGGCACTCTCTGCCTCCTCTATCTGCCAAAACTTATGGA GCTTGGCATCAAGTGGATCAACAGTTTGTACCTCAACTCTCATTTGATGA CTATAAGTCACTTCAGTCAAACCTTTGAAAACAACAGATCCACTCAAAAT CCAACCAAGTGAAGATTCACAAGCCACAACGCCTTCCTTGCTCTCACGTC TCTTACCAGTAAAAAAGCGAAAATAAAAATCGATACCAACCAATACCCCT ATACTCAAGTCAAACTCCTCGGAAACGTCTGCAAACACCAAATCAGAGAA TTCATTCAACTTCTTTGCACAATCCAACTTCTGGTTTGCAATCGGGCTAC AAATGTCCGGAACACAAAGAGCTTCAACNN

Coding sequence (CDS) from alignment at scaffold_451:973323..973752

>TCONS_00066294 ID=TCONS_00066294|Name=TCONS_00066294|organism=Clytia hemisphaerica|type=CDS|length=426bp|location=Sequence derived from alignment at scaffold_451:973323..973752 (Clytia hemisphaerica)
ATACCTAGTACCATCATGGTAAATGTCTTTGGTAAATTGGTTAATCACTG
AGTTATCCTCGGCACTCTCTGCCTCCTCTATCTGCCAAAACTTATGGAGC
TTGGCATCAAGTGGATCAACAGTTTGTACCTCAACTCTCATTTGATGACT
ATAAGTCACTTCAGTCAAACCTTTGAAAACAACAGATCCACTCAAAATCC
AACCAAGTGAAGATTCACAAGCCACAACGCCTTCCTTGCTCTCACGTCTC
TTACCAGTAAAAAAGCGAAAATAAAAATCGATACCAACCAATACCCCTAT
ACTCAAGTCAAACTCCTCGGAAACGTCTGCAAACACCAAATCAGAGAATT
CATTCAACTTCTTTGCACAATCCAACTTCTGGTTTGCAATCGGGCTACAA
ATGTCCGGAACACAAAGAGCTTCAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_041496XLOC_041496Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00066294-proteinTCONS_00066294-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00066294-exon-scaffold_451-1491911889:973323..973752TCONS_00066294-exon-scaffold_451-1491911889:973323..973752Clytia hemisphaericaexon
TCONS_00066294-exon-scaffold_451-1510915933:973323..973752TCONS_00066294-exon-scaffold_451-1510915933:973323..973752Clytia hemisphaericaexon
TCONS_00066294-exon-scaffold_451-1575043694:973323..973752TCONS_00066294-exon-scaffold_451-1575043694:973323..973752Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_451supercontigscaffold_451:973323..973752 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.321066 0.156545 0.181763 0.355654 108.027 93.0511 8.18646 8.25901 1.08222 2.72643 1.46377 1.34714 0.747357 0.665261 0.455779 1.8297 1.0846 0.494081 1.7065 3.03574 1.08649 0.282704 0.736255 1.1102 1.89593 1.69207 0.880489 0.704761 1.00377 1.05271
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR008737Peptidase_asp_put
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00066294 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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