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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00066289 ID=TCONS_00066289|Name=TCONS_00066289|organism=Clytia hemisphaerica|type=transcript|length=1292bp
ataaaacaCGTTTAGCATTATACTTCAAGAACACTTGAGAATACGATGAG
AGCTGTCTATTTACAAAAAAGCTTGGAAGACAACTGTCTGAAAAAAACTG
AATTAGAGCaggaaaaagttatcaaaaaagtaccttataattttaaaaac
tatTTACACAGCTGCCGGTTTTAAAATACTGTTATTAAataaaatctcga
aaaagaatgttttttttttaatctaaaagGCCAAATATGATTGCCTGATT
CTGTTCGTCATAAAATTCCTCTCCAATTCCTTTTCCTCTCCAAAAAACCA
ACGTGTCCCAATTATCGATTTGTGAGAAGTTTTTACATCGATCAATGTTT
GTTGCATGAAGTAACATAACTTTTCCTTCATCCCACCAAACTTTGTAGGG
TAAATCCTCGACCTTTATCTCATCGTCTCCTTCCTCGATGTGGCTTCCCT
TGCCTTTCATGAGCACGAAAGTCACGCAGTCGCGAGCAAGGAGGTCAAAC
GCTTTCTTGATGAAAAAGAATCTGTCCGTCTTATACAGCTTCTTGTCTTC
CATTGATGTGATAATGGCTTTACACCAATCCTGGTATTCTTCTAAATCAC
ATTGCTCAAAACCATCTTTTTTGTCTTTCATAAAGAACTTTCGCAATCCC
CATTCCAATTGGTCCATAATCTGCAGAGGTTCTATTTCAGCTCGTGTCGC
TTGACCAACTTTATCAGCTCTGGCTACATTATGAGCAATCGATTCTCCGA
TTTGTGGTCTATCGACGTACTGTAACTCAGCAATTCTTTGCTCCTTCAGT
GCTAGCTCACGTTTCAATAATTTGCATTCAGCCTCCTTTGCTGCAAGATC
GGTCTCCGATTTGGCTTGCAACTCAATAGCCTTCCATCTCAGCTTCATGA
GCTCTTTCCAACTCGAGTCATTCTTCAATCGAAAAACTTCTTGATCCTTG
GCTGTTAACTCACGTTCGAGGACTTCTAGTTTGGACTGATACTCCATTTT
TTTGTCCGCCATTTCCTTTTGCATcttcttttcaattttctcattttggt
TGCCTCTCAATTCCCTTTCTTGTTTCAACGCCTGGTTTTCGTTTACAAGC
TCAACAATTCTAAACGCCGAATAACTACTATCACTTTTAACTTGCTTTTC
CGACTTTCCATTGTCGTTGTTTTGATCATCTCTACGCTTTACACCACCTT
TTGAATTGCTGGTACTTCGCTGAACGGTAAAAAAAGCTCGATCCATCTCA
TTAAGTTGATAAACTGGAGGATATAACCCTTTTCTGCTTCAC Run BLAST on NCBI protein sequence of TCONS_00066289-protein >TCONS_00066289-protein ID=TCONS_00066289-protein|Name=TCONS_00066289-protein|organism=Clytia hemisphaerica|type=polypeptide|length=342bp
MDRAFFTVQRSTSNSKGGVKRRDDQNNDNGKSEKQVKSDSSYSAFRIVEL
VNENQALKQERELRGNQNEKIEKKMQKEMADKKMEYQSKLEVLERELTAK
DQEVFRLKNDSSWKELMKLRWKAIELQAKSETDLAAKEAECKLLKRELAL
KEQRIAELQYVDRPQIGESIAHNVARADKVGQATRAEIEPLQIMDQLEWG
LRKFFMKDKKDGFEQCDLEEYQDWCKAIITSMEDKKLYKTDRFFFIKKAF
DLLARDCVTFVLMKGKGSHIEEGDDEIKVEDLPYKVWWDEGKVMLLHATN
IDRCKNFSQIDNWDTLVFWRGKGIGEEFYDEQNQAIIFGLLD Run BLAST on NCBI transcript from alignment at scaffold_451:827520..828811 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00066289 ID=TCONS_00066289|Name=TCONS_00066289|organism=Clytia hemisphaerica|type=transcript|length=1292bp|location=Sequence derived from alignment at scaffold_451:827520..828811 (Clytia hemisphaerica)
GTGAAGCAGAAAAGGGTTATATCCTCCAGTTTATCAACTTAATGAGATGG
ATCGAGCTTTTTTTACCGTTCAGCGAAGTACCAGCAATTCAAAAGGTGGT
GTAAAGCGTAGAGATGATCAAAACAACGACAATGGAAAGTCGGAAAAGCA
AGTTAAAAGTGATAGTAGTTATTCGGCGTTTAGAATTGTTGAGCTTGTAA
ACGAAAACCAGGCGTTGAAACAAGAAAGGGAATTGAGAGGCAaccaaaat
gagaaaattgaaaagaagATGCAAAAGGAAATGGCGGACAAAAAAATGGA
GTATCAGTCCAAACTAGAAGTCCTCGAACGTGAGTTAACAGCCAAGGATC
AAGAAGTTTTTCGATTGAAGAATGACTCGAGTTGGAAAGAGCTCATGAAG
CTGAGATGGAAGGCTATTGAGTTGCAAGCCAAATCGGAGACCGATCTTGC
AGCAAAGGAGGCTGAATGCAAATTATTGAAACGTGAGCTAGCACTGAAGG
AGCAAAGAATTGCTGAGTTACAGTACGTCGATAGACCACAAATCGGAGAA
TCGATTGCTCATAATGTAGCCAGAGCTGATAAAGTTGGTCAAGCGACACG
AGCTGAAATAGAACCTCTGCAGATTATGGACCAATTGGAATGGGGATTGC
GAAAGTTCTTTATGAAAGACAAAAAAGATGGTTTTGAGCAATGTGATTTA
GAAGAATACCAGGATTGGTGTAAAGCCATTATCACATCAATGGAAGACAA
GAAGCTGTATAAGACGGACAGATTCTTTTTCATCAAGAAAGCGTTTGACC
TCCTTGCTCGCGACTGCGTGACTTTCGTGCTCATGAAAGGCAAGGGAAGC
CACATCGAGGAAGGAGACGATGAGATAAAGGTCGAGGATTTACCCTACAA
AGTTTGGTGGGATGAAGGAAAAGTTATGTTACTTCATGCAACAAACATTG
ATCGATGTAAAAACTTCTCACAAATCGATAATTGGGACACGTTGGTTTTT
TGGAGAGGAAAAGGAATTGGAGAGGAATTTTATGACGAACAGAATCAGGC
AATCATATTTGGCcttttagattaaaaaaaaaacattctttttcgagatt
ttatTTAATAACAGTATTTTAAAACCGGCAGCTGTGTAAatagtttttaa
aattataaggtacttttttgataactttttcctGCTCTAATTCAGTTTTT
TTCAGACAGTTGTCTTCCAAGCTTTTTTGTAAATAGACAGCTCTCATCGT
ATTCTCAAGTGTTCTTGAAGTATAATGCTAAACGtgttttat Coding sequence (CDS) from alignment at scaffold_451:827520..828811 >TCONS_00066289 ID=TCONS_00066289|Name=TCONS_00066289|organism=Clytia hemisphaerica|type=CDS|length=1029bp|location=Sequence derived from alignment at scaffold_451:827520..828811 (Clytia hemisphaerica)
ATGGATCGAGCTTTTTTTACCGTTCAGCGAAGTACCAGCAATTCAAAAGG
TGGTGTAAAGCGTAGAGATGATCAAAACAACGACAATGGAAAGTCGGAAA
AGCAAGTTAAAAGTGATAGTAGTTATTCGGCGTTTAGAATTGTTGAGCTT
GTAAACGAAAACCAGGCGTTGAAACAAGAAAGGGAATTGAGAGGCAacca
aaatgagaaaattgaaaagaagATGCAAAAGGAAATGGCGGACAAAAAAA
TGGAGTATCAGTCCAAACTAGAAGTCCTCGAACGTGAGTTAACAGCCAAG
GATCAAGAAGTTTTTCGATTGAAGAATGACTCGAGTTGGAAAGAGCTCAT
GAAGCTGAGATGGAAGGCTATTGAGTTGCAAGCCAAATCGGAGACCGATC
TTGCAGCAAAGGAGGCTGAATGCAAATTATTGAAACGTGAGCTAGCACTG
AAGGAGCAAAGAATTGCTGAGTTACAGTACGTCGATAGACCACAAATCGG
AGAATCGATTGCTCATAATGTAGCCAGAGCTGATAAAGTTGGTCAAGCGA
CACGAGCTGAAATAGAACCTCTGCAGATTATGGACCAATTGGAATGGGGA
TTGCGAAAGTTCTTTATGAAAGACAAAAAAGATGGTTTTGAGCAATGTGA
TTTAGAAGAATACCAGGATTGGTGTAAAGCCATTATCACATCAATGGAAG
ACAAGAAGCTGTATAAGACGGACAGATTCTTTTTCATCAAGAAAGCGTTT
GACCTCCTTGCTCGCGACTGCGTGACTTTCGTGCTCATGAAAGGCAAGGG
AAGCCACATCGAGGAAGGAGACGATGAGATAAAGGTCGAGGATTTACCCT
ACAAAGTTTGGTGGGATGAAGGAAAAGTTATGTTACTTCATGCAACAAAC
ATTGATCGATGTAAAAACTTCTCACAAATCGATAATTGGGACACGTTGGT
TTTTTGGAGAGGAAAAGGAATTGGAGAGGAATTTTATGACGAACAGAATC
AGGCAATCATATTTGGCcttttagattaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00066289-exon-scaffold_451-1491911889:827520..828811 | TCONS_00066289-exon-scaffold_451-1491911889:827520..828811 | Clytia hemisphaerica | exon |
| TCONS_00066289-exon-scaffold_451-1510915933:827520..828811 | TCONS_00066289-exon-scaffold_451-1510915933:827520..828811 | Clytia hemisphaerica | exon |
| TCONS_00066289-exon-scaffold_451-1575043694:827520..828811 | TCONS_00066289-exon-scaffold_451-1575043694:827520..828811 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_451 | supercontig | scaffold_451:827520..828811 . |
Blast
The following BLAST results are available for this feature:
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